Polycystic kidney disease pathway (Homo sapiens)

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1AMPKSOCIncreased in PKDAMP NucleusProtein SynthesiscyclinDIKK2DvlTNFCa2+MTORPC1cAMP mTOR inhibitorsRHEBTSC2RSKDecreased in PKDTSC1ERKMEKCDK inhibitorsMEK inhGSK3betaMetforminCa2+Ca2+Ca2+PDEAc-VIPKATNFalphaTNF anatagonistBRAFRasSRCSrc inhPKAPC2IP3TriptolidePLCgammaTKIsEGFIGF1VEGFPKACl-CTFR inhRGqRGiV2RGsSomatostatinVasopressinV2RAFrizzledWntsFRP4AMPADPATPATPaseLKB1Na+K+phosJUNMYCATPaseNa+K+Na+NKCC1K+KCa3.1KCa3.1 inh beta-CateninProteasomePC1PC2PC2PC1PC1PC2ATP


Description

A putative PKD pathway proposed in Torres 2009 (Figure 2), showing up or down regulated genes.

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Quality Tags

Ontology Terms

 

Bibliography

  1. ''Growth hormone synthesis, secretion and action''; https://www.genome.jp/pathway/hsa04935,
  2. Torres VE, Harris PC; ''Autosomal dominant polycystic kidney disease: the last 3 years.''; Kidney Int, 2009 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
128611view00:43, 16 February 2024Khanspersadded missing xrefs
128391view03:07, 4 February 2024EweitzStandardize case
128240view22:44, 29 January 2024KhanspersOntology Term : 'kidney cell' added !
128239view22:43, 29 January 2024KhanspersOntology Term : 'polycystic kidney disease' added !
128238view22:41, 29 January 2024KhanspersOntology Term : 'signaling pathway' added !
128237view22:38, 29 January 2024Khanspersupdated xrefs
128118view00:35, 27 January 2024KhanspersModified description
128117view00:34, 27 January 2024Khanspersadded xrefs, updated layout
128116view23:39, 26 January 2024KhanspersModified description
128115view23:33, 26 January 2024Khanspersadded xrefs, layout
128114view22:17, 26 January 2024Khansperswork in progress: adding xrefs, changing data nodes to labels where appropriate
121723view19:25, 26 February 2022EweitzUse gene symbols
117817view14:51, 22 May 2021EweitzModified title
108308view19:54, 4 December 2019AgustinGV
108307view19:51, 4 December 2019AgustinGV
108306view19:43, 4 December 2019AgustinGV
108305view19:43, 4 December 2019AgustinGV
108304view19:40, 4 December 2019AgustinGV
108303view19:39, 4 December 2019AgustinGVAdd identifiers B-catenin/GSK3B
108302view19:35, 4 December 2019AgustinGVFix lables
108301view19:31, 4 December 2019AgustinGV
108300view19:30, 4 December 2019AgustinGV
106188view12:08, 16 August 2019MaintBotHMDB identifier normalization
97490view13:49, 23 May 2018Fehrhartadded annotations
88333view15:54, 1 August 2016FehrhartOntology Term : 'kidney disease pathway' added !
84489view23:15, 25 February 2016KhanspersQuick edit to datanode annotation or property
79790view16:02, 16 April 2015Mkutmonfixed unconnected line
78508view10:29, 7 January 2015MaintBotadded missing graphIds
78125view16:17, 4 December 2014Mkutmonadded more xrefs and some layout changes
78124view15:48, 4 December 2014Mkutmonadded some xrefs
78123view15:23, 4 December 2014Mkutmonremoved fill color since it is not ideal for visualization
74333view21:14, 12 April 2014EgonwModified description
71048view18:21, 25 September 2013EgonwAdded several identifiers.
71047view17:19, 25 September 2013EgonwCompleted entering all entities.
71046view13:06, 25 September 2013EgonwAdded identifiers for two PKD genes.
71045view11:47, 25 September 2013EgonwMore pathway content.
71044view11:16, 25 September 2013EgonwMore entities. Prob. 20% done now, excl identifiers.
71043view10:49, 25 September 2013EgonwModified description
71042view10:47, 25 September 2013EgonwNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
beta-Catenin
ADPMetaboliteCHEBI:16761 (ChEBI)
AMP MetaboliteCHEBI:16027 (ChEBI)
AMPMetaboliteCHEBI:16027 (ChEBI)
AMPKGeneProduct
ATPMetaboliteCHEBI:15422 (ChEBI)
ATPase
Ac-VI
BRAFGeneProductENSG00000157764 (Ensembl)
CDK inhibitorsMetabolite
CTFR inhMetabolite
Ca2+MetaboliteCHEBI:29108 (ChEBI)
Cl-Metabolite
Decreased in PKD
Dvl
EGFGeneProductENSG00000138798 (Ensembl)
ERKGeneProduct
Frizzled
GSK3betaGeneProductENSG00000082701 (Ensembl)
Gi
Gq
Gs
IGF1GeneProductENSG00000017427 (Ensembl)
IKK2GeneProductENSG00000104365 (Ensembl)
IP3MetaboliteCHEBI:16595 (ChEBI)
Increased in PKD
JUNGeneProductENSG00000177606 (Ensembl)
K+Metabolite791 (Chemspider)
KCa3.1 inhMetabolite
KCa3.1GeneProductENSG00000104783 (Ensembl)
LKB1GeneProductENSG00000118046 (Ensembl)
MEK inhMetabolite
MEKGeneProductENSG00000095015 (Ensembl)
MTORGeneProductENSG00000198793 (Ensembl)
MYCGeneProductENSG00000136997 (Ensembl)
MetforminMetabolite
NKCC1
Na+Metabolite923 (PubChem-compound)
Na+MetaboliteCHEBI:29101 (ChEBI)
Nucleus
PC1GeneProductENSG00000008710 (Ensembl) Also known as PKD1.
PC2GeneProductENSG00000118762 (Ensembl) Also known as PKD2.
PDEGeneProduct
PKA
PLCgammaGeneProduct
ProteasomePathway
Protein SynthesisPathway
R
RHEBGeneProductENSG00000106615 (Ensembl)
RSKGeneProduct
RasGeneProduct
SOCGeneProduct
SRCGeneProductENSG00000197122 (Ensembl)
SomatostatinMetaboliteHMDB0013072 (HMDB)
Src inhMetabolite
TKIsMetabolite
TNF anatagonistMetabolite
TNFGeneProductENSG00000232810 (Ensembl)
TNFalphaGeneProductENSG00000204490 (Ensembl)
TSC1GeneProductENSG00000165699 (Ensembl)
TSC2GeneProductENSG00000103197 (Ensembl)
Triptolide
V2R
V2RA
VEGFGeneProduct
VasopressinMetaboliteHMDB0001980 (HMDB)
Wnt
cAMP MetaboliteHMDB0000058 (HMDB)
cyclinDGeneProductENSG00000110092 (Ensembl)
mTOR inhibitorsMetabolite
phos
sFRP4

Annotated Interactions

No annotated interactions

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