Hedgehog signaling pathway (Rattus norvegicus)

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Revision as of 23:49, 12 February 2010 by AlexanderPico (Talk | contribs)
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Error rendering pathway page

This revision of the pathway probably contains invalid GPML code. If this happens to the most recent revision, try reverting the pathway using the pathway history displayed below or contact the site administrators (see WikiPathways:About) to resolve this problem.

Pathway history

View all...
CompareRevisionActionTimeUserComment
116976view10:42, 16 May 2021EweitzModified title
88448view14:30, 8 August 2016Mkutmonadded missing xref
88447view14:29, 8 August 2016Mkutmonadded missing xref
69420view19:02, 8 July 2013MaintBotUpdated to 2013 gpml schema
67330view10:38, 26 June 2013Christine ChichesterOntology Term : 'Hedgehog signaling pathway' added !
41743view02:40, 2 March 2011MaintBotRemoved redundant pathway information and comments
35740view23:51, 12 February 2010AlexanderPico
35738view23:49, 12 February 2010AlexanderPico
34116view19:25, 9 December 2009MaintBotAutomatic update of empty xrefs
31480view21:24, 13 August 2009MaintBotFixed text labels
30967view00:48, 30 July 2009MaintBotConverted from Homo sapiens
21888view11:32, 14 November 2008MaintBot[[Pathway:Rattus norvegicus:Hedgehog Netpath 10]] moved to [[Pathway:WP574]]: Moved to stable identifier
8130view13:46, 7 January 2008MaintBot[[Pathway:Rat:Hedgehog Netpath 10]] moved to [[Pathway:Rattus norvegicus:Hedgehog Netpath 10]]: Renaming species
7686view16:09, 18 December 2007MaintBotfixed category names
7237view12:41, 4 November 2007MaintBotAdded categories to GPML
6555view22:20, 22 May 2007A.Pandeygpml file for [[Rat:Hedgehog_Netpath_10]]

Error details

exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/8/84/WP574_35738.svg:
<BR>Status:1
<BR>Message:[     0.565] Info:  Recognized format [Namespace: prefix "" is mapped to URI "http://genmapp.org/GPML/2008a"]
[     0.884] Info:  Document is valid according to the xml schema definition 'GPML2008a.xsd'
Warn:  Reference to non existing biopax element found: f8a
Warn:  Reference to non existing biopax element found: ad8
Exception in thread "main" java.util.ConcurrentModificationException
	at java.util.ArrayList$Itr.checkForComodification(ArrayList.java:866)
	at java.util.ArrayList$Itr.next(ArrayList.java:838)
	at org.pathvisio.core.view.VPathway.fromModel(Unknown Source)
	at org.pathvisio.core.model.BatikImageExporter.doExport(Unknown Source)
	at org.pathvisio.core.Engine.exportPathway(Unknown Source)
	at org.pathvisio.core.util.Converter.main(Unknown Source)

<BR>Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways/images/7/74/WP574_35738.gpml" "/var/www/wikipathways/images/8/84/WP574_35738.svg" 2>&1<BR>' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
#0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio('/var/www/wikipa...', '/var/www/wikipa...')
#1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
#2 /var/www/wikipathways/wpi/extensions/Pathways/PathwayPage.php(21): Pathway->updateCache('svg')
#3 [internal function]: renderPathwayPage(Object(Parser), '<?xml version="...', Object(StripState))
#4 /var/www/wikipathways/includes/Hooks.php(125): call_user_func_array('renderPathwayPa...', Array)
#5 /var/www/wikipathways/includes/parser/Parser.php(318): wfRunHooks('ParserBeforeStr...', Array)
#6 /var/www/wikipathways/includes/Article.php(3406): Parser->parse('<?xml version="...', Object(Title), Object(ParserOptions), true, true, 35738)
#7 /var/www/wikipathways/includes/Article.php(875): Article->outputWikiText('<?xml version="...', false)
#8 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
#9 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
#10 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
#11 {main}
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