Nuclear receptors in lipid metabolism and toxicity (Gallus gallus)

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DIETGene expressionXenobioticsDIETCYP4B1CYP2C9CYP7A1ABCA1CYP3A80ABCA1PPARGABCD3CYP24A1CYP2B6CYP2C9SteroidsRARAABCD2CYP7A1CholesterolABCA1RARGAcetyl CoANR1H4PPARDCYP2E1LanosterolCYP2B6abcg67-DehydroCholesterolCYP1A2PPARAOxysterolCYP4B1CYP26A1CYP27B1ABCB4CYP8BBile Acids1,25-Dihydroxy-Vitamins D3Retinoic acidABCG1VDRABCC2RARBNR1I3Fatty AcidsNR1I2CYP7A1ABCB11IsoprenoidsCYP3A80NR1H3ABCB1ABCG5ABCC3CYP2C9CYP3A80ABCB1A


Description

Nuclear receptors are a class of proteins found within the interior of cells that are responsible for sensing the presence of steroid and thyroid hormones and certain other molecules. In response, these receptors work in concert with other proteins to regulate the expression of specific genes thereby controlling the development, homeostasis, and metabolism of the organism. Nuclear receptors have the ability to directly bind to DNA and regulate the expression of adjacent genes, hence these receptors are classified as transcription factors. The regulation of gene expression by nuclear receptors only happens when a liganda molecule which affects the receptor's behavioris present. More specifically, ligand binding to a nuclear receptor results in a conformational change in the receptor which in turn activates the receptor resulting in up-regulation of gene expression. A unique property of nuclear receptors which differentiate them from other classes of receptors is their ability to directly interact with and control the expression of genomic DNA. Consequently nuclear receptors play key roles in both embryonic development and adult homeostasis. Source: Wikipedia (wikipedia:Nuclear_receptor)

Comments

GenMAPP remarks 
Converted to human by GenMAPP.org
HomologyConvert 
This pathway was inferred from Homo sapiens pathway WP299(r21309) with a 57% conversion rate.

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History

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CompareRevisionActionTimeUserComment
109452view10:21, 18 March 2020L DupuisDeleted unconnected line and converted interaction line in legend to graphical line
107105view14:18, 17 September 2019MaintBotChEBI identifier normalization
106108view12:01, 16 August 2019MaintBotHMDB identifier normalization
96343view09:27, 9 March 2018EgonwReplaced a secondary ChEBI identifier with a primary identifier.
89869view12:38, 6 October 2016MkutmonModified description
89868view12:37, 6 October 2016MkutmonModified description
89867view12:35, 6 October 2016MkutmonModified description
74225view15:10, 8 April 2014EgonwRemoved a data source where no ID was given.
72374view13:03, 13 November 2013EgonwRemoved a few data sources where no identifier was given.
69991view22:17, 11 July 2013MaintBotupdated to 2013 schema
67540view11:23, 26 June 2013DdiglesOntology Term : 'lipid metabolic pathway' added !
47791view16:29, 6 April 2012Khanspersupdated xref
41023view22:57, 1 March 2011MaintBotRemoved redundant pathway information and comments
35690view22:58, 12 February 2010KhanspersDescription
35688view22:57, 12 February 2010KhanspersModified description
33944view18:15, 9 December 2009MaintBotAutomatic update of empty xrefs
33440view14:57, 30 November 2009MaintBotRemoved group label
30324view20:44, 29 July 2009MaintBotNew pathway

External references

DataNodes

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NameTypeDatabase referenceComment
1,25-Dihydroxy-Vitamins D3Metabolite
7-DehydroCholesterolMetabolite
ABCA1GeneProduct373945 (Entrez Gene)
ABCB11GeneProduct424170 (Entrez Gene)
ABCB1GeneProduct420534 (Entrez Gene)
ABCB1AGeneProduct
ABCB4GeneProduct
ABCC2GeneProduct423828 (Entrez Gene)
ABCC3GeneProduct422099 (Entrez Gene)
ABCD2GeneProduct417694 (Entrez Gene)
ABCD3GeneProduct424487 (Entrez Gene)
ABCG1GeneProduct418533 (Entrez Gene)
ABCG5GeneProduct421401 (Entrez Gene)
Acetyl CoAMetabolite
Bile AcidsMetabolite3098 (ChEBI)
CYP1A2GeneProduct414856 (Entrez Gene)
CYP24A1GeneProduct395827 (Entrez Gene)
CYP26A1GeneProduct408183 (Entrez Gene)
CYP27B1GeneProduct
CYP2B6GeneProduct
CYP2C9GeneProduct
CYP2E1GeneProduct
CYP3A80GeneProduct416477 (Entrez Gene)
CYP4B1GeneProduct424618 (Entrez Gene)
CYP7A1GeneProduct414834 (Entrez Gene)
CYP8BGeneProduct425055 (Entrez Gene)
CholesterolMetabolite
Fatty AcidsMetabolite35366 (ChEBI)
IsoprenoidsMetabolite24913 (ChEBI)
LanosterolMetabolite6374 (ChEBI)
NR1H3GeneProduct395221 (Entrez Gene)
NR1H4GeneProduct373902 (Entrez Gene) Farnesoid X-activated receptor
NR1I2GeneProduct
NR1I3GeneProduct395439 (Entrez Gene)
OxysterolMetabolite
PPARAGeneProduct374120 (Entrez Gene)
PPARDGeneProduct395479 (Entrez Gene)
PPARGGeneProduct373928 (Entrez Gene)
RARAGeneProduct395213 (Entrez Gene)
RARBGeneProduct396266 (Entrez Gene)
RARGGeneProduct
Retinoic acidMetaboliteHMDB01852 (HMDB)
SteroidsMetabolite
VDRGeneProduct395988 (Entrez Gene)
abcg6GeneProduct

Annotated Interactions

No annotated interactions