Portal:RareDisease/BlauBookPathways

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(New page: * Pathway:WP4156 - Chapter 1 "Disorders of Phenylalanine and Tetrahydrobiopterin (BH4) Metabolism" * Pathway:WP4506 - Chapter 2 "Tyrosine Metabolism" * Pathway:WP4292 - Chapte...)
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* [[Pathway:WP4156]] - Chapter 1 "Disorders of Phenylalanine and Tetrahydrobiopterin (BH4) Metabolism"  
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{|
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* [[Pathway:WP4506]] - Chapter 2 "Tyrosine Metabolism"
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* [[Pathway:WP4292]] - Chapter 3 "Sulphur Amino Acids"
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{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} | Portal:Disease/BlauBookPathways}}
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|align="right"|[[Image:Blau_cover.jpg‎|170px]]
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|}
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<p>View all [[Portal:Disease/BlauBookPathways|Pathways]] digitized from [https://tools.wmflabs.org/scholia/work/Q54006412 Physician's Guide to the Diagnosis, Treatment, and Follow-Up of Inherited Metabolic Diseases] by Blau ''et al.''</p>
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* [[Pathway:WP4259]] - Chapter 10 "Disorders of Folate Metabolism and Transport"
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<b>How to add a pathway to the portal</b>
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* [[Pathway:WP4288]] - Chapter 10 "MTHFR deficiency (additional pathway)"
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{| style="margin: 10px"
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The list of Featured Pathways is not static and can be updated at any time. If you know of a pathway that should be added, please [mailto:denise.slenter@maastrichtuniversity contact Denise Slenter].
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|width=100px; cell padding=50px|{{#pwImage:Pathway:WP4156|250px||Disorders of Phenylalanine and Tetrahydrobiopterin (BH4) Metabolism}}
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|width=100px|{{#pwImage:Pathway:WP4506|250px||Tyrosine Metabolism}}
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|width=100px|{{#pwImage:Pathway:WP4292|250px||Sulphur Amino Acids}}
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|width=100px|{{#pwImage:Pathway:WP4259|250px||Disorders of Folate Metabolism and Transport}}
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|width=100px|{{#pwImage:Pathway:WP4288|250px||MTHFR deficiency (additonal pathway)}}
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|}
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* [[Pathway:WP4228]] - Chapter 11 "Vitamine B6-Dependent and Responsive Disorders"
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* [[Pathway:WP4507]] - Chapter 12 "Molybdenum (Moco) cofactor biosynthesis"
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* [[Pathway:WP4504]] - Chapter 12 "Cysteine and Methionine catabolism"
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* [[Pathway:WP4271]] - Chapter 13 "Vitamin B12 Disorders"
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* [[Pathway:WP4297]] - Chapter 15 "Thiamine Disorders"
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{| style="margin: 10px"
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|width=100px; cell padding=50px|{{#pwImage:Pathway:WP4228|250px||Vitamine B6-Dependent and Responsive Disorders}}
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|width=100px|{{#pwImage:Pathway:WP4507|250px||Molybdenum (Moco) cofactor biosynthesis}}
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|width=100px|{{#pwImage:Pathway:WP4504|250px||Cysteine and Methionine catabolism}}
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|width=100px|{{#pwImage:Pathway:WP4271|250px||Vitamin B12 Disorders}}
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|width=100px|{{#pwImage:Pathway:WP4297|250px||Thiamine Disorders}}
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|}
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* [[Pathway:WP4236]] - Chapter 20 "Disorders of the Krebs Cycle" 
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* [[Pathway:WP4153]] - Chapter 25 "Lysosomal Storage Disorders Including Neuronal Ceroid Lipofuscinoses (Sphingolipid degradation)"
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* [[Pathway:WP4220]] - Chapter 31 "Neurotransmitter Disorders" 
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* [[Pathway:WP4224]] - Chapter 41 "Purine Disorders"
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* [[Pathway:WP4225]] - Chapter 41 "Pyrimidine Disorders"
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{| style="margin: 10px"
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|width=100px; cell padding=50px|{{#pwImage:Pathway:WP4236|250px||Disorders of the Krebs Cycle}}
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|width=100px|{{#pwImage:Pathway:WP4153|250px||Lysosomal Storage Disorders Including Neuronal Ceroid Lipofuscinoses (Sphingolipid degradation)}}
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|width=100px|{{#pwImage:Pathway:WP4220|250px||Neurotransmitter Disorders}}
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|width=100px|{{#pwImage:Pathway:WP4224|250px||Purine Disorders}}
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|width=100px|{{#pwImage:Pathway:WP4225|250px||Pyrimidine Disorders}}
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|}
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Pathways with kinetics data [coming soon!].
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* [[Pathway:WP4519]] - Chapter 8 "Cerebral Organic Acidurias, including diseases"
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* [[Pathway:WP4521]] - Chapter 30 "Glycosylation and related congenital defects."
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* [[Pathway:WP4523]] - Chapter 37 "Classical pathway of steroidogenesis, including diseases"
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* [[Pathway:WP4524]] - Chapter 37 "The alternative pathway of fetal androgen synthesis, including diseases"
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* [[Pathway:WP4518]] - Chapter 42 "Gamma-Glutamyl Cycle for the biosynthesis and degradation of glutathione, including diseases"
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* [[Pathway:WP4522]] - Chapter 43 "Metabolic pathway of LDL, HDL and TG, including diseases"
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{| style="margin: 10px"
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|width=60px; cell padding=50px|{{#pwImage:Pathway:WP4519|250px||Cerebral Organic Acidurias, including diseases}}
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|width=60px|{{#pwImage:Pathway:WP4521|230px||Glycosylation and related congenital defects.}}
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|width=60px|{{#pwImage:Pathway:WP4523|230px||Classical pathway of steroidogenesis, including diseases}}
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|width=60px|{{#pwImage:Pathway:WP4524|230px||The alternative pathway of fetal androgen synthesis, including diseases}}
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|width=60px|{{#pwImage:Pathway:WP4518|230px||Gamma-Glutamyl Cycle for the biosynthesis and degradation of glutathione, including diseases}}
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|width=60px|{{#pwImage:Pathway:WP4522|230px||Metabolic pathway of LDL, HDL and TG, including diseases}}
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|}
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Revision as of 10:45, 7 May 2019


Cerebral organic acidurias, including diseases (Homo sapiens)
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/9/9f/WP4519_104160.svg:
Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/9/9f/WP4519_104160.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Cerebral organi...', 'https://classic...', 'Cerebral organi...', 'center', 'pwthumb', '300')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4519', '300', 'center', 'Cerebral organi...', 'pathway', 'Cerebral organi...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPTemplateFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2986): PPFrame_DOM->expand(Object(PPNode_DOM))
  10. 9 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  12. 11 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{{Template:Toda...')
  13. 12 /var/www/wikipathways/includes/parser/Parser.php(439): Parser->internalParse('{{Template:Toda...')
  14. 13 /var/www/wikipathways/wpi/extensions/PathwayOfTheDay/PathwayOfTheDay.php(60): Parser->recursiveTagParse('{{Template:Toda...')
  15. 14 [internal function]: getPathwayOfTheDay(Object(Parser), 'Saturday 18 May...', 'Portal:Disease/...')
  16. 15 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getPathwayOfThe...', Array)
  17. 16 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  18. 17 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  19. 18 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{|? |? {{ #path...')
  20. 19 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{|? |? {{ #path...')
  21. 20 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{|? |? {{ #path...', Object(Title), Object(ParserOptions), true, true, 104162)
  22. 21 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{|? |? {{ #path...', Object(Title), true, true)
  23. 22 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{|? |? {{ #path...', Object(Title), true)
  24. 23 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{|? |? {{ #path...')
  25. 24 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  26. 25 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  27. 26 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  28. 27 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  29. 28 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  30. 29 {main}

View all Pathways digitized from Physician's Guide to the Diagnosis, Treatment, and Follow-Up of Inherited Metabolic Diseases by Blau et al.


How to add a pathway to the portal

The list of Featured Pathways is not static and can be updated at any time. If you know of a pathway that should be added, please contact Denise Slenter.

Retrieved from "https://classic.wikipathways.org/index.php/Portal:RareDisease/BlauBookPathways"