Portal:Semantic Web/Intro

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=== Welcome to the WikiPathways Semantic Web Portal! ===
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== Welcome to the WikiPathways Semantic Web Portal! ==
[[Image:Sebweblogo.jpg|right|x150px]]
[[Image:Sebweblogo.jpg|right|x150px]]
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This portal describes the Semantic Web features of the WikiPathways databases, such as the Resource Description Framework translation, the ontology, and the new nanopublications.
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This portal describes the Semantic Web features of the WikiPathways databases, such as the [http://www.w3.org/RDF/ Resource Description Framework] (RDF) translation, the ontology, and the new nanopublications.
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Two subsets of pathways from WikiPathways are now available in the [http://www.w3.org/RDF/ RDF] format:
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The WikiPathways RDF is provided as part of the monthly releases and contains the [http://wikipathways.org/index.php?title=Special%3ABrowsePathways&browse=---&tag=Curation%3AAnalysisCollection&view=thumbs Curated] and [http://wikipathways.org/index.php?title=Special%3ABrowsePathways&browse=---&tag=Curation%3AReactome_Approved&view=thumbs Reactome] pathways. The RDF is split in two parts, the GPMLRDF part which contains a direct translation of the content in the GPML files, and a WPRDF part which contains the biology represented in the GPML
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There is a subset for the WP vocabulary and a subset for the GPML vocabulary.  The WP vocabulary is for the semantic information about the pathway, datanodes, and interactions and the GPML vocabulary is for the graphical information about how the pathway diagram is laid out and represented.
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  Contained in the RDF collection for both the WP and the GPML vocabulary sets, is the [http://wikipathways.org/index.php?title=Special%3ABrowsePathways&browse=---&tag=Curation%3AAnalysisCollection&view=thumbs Curated] and the [http://wikipathways.org/index.php?title=Special%3ABrowsePathways&browse=---&tag=Curation%3AReactome_Approved&view=thumbs Reactome] collections.
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Information for the collection  about the interactions is also available included in the RDF.
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Updates are currently not immediate. Meaning that if you add a new pathway or edit an existing one these updates will not be available in the RDF immediately. We do test builds of the RDF daily though. If you need an RDF update please contact us (on the mailing is best) and we can see what can be done.
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=== The WikiPathways Vocabularies ===
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The RDF was created using these [http://vocabularies.wikipathways.org vocabularies] and database identifiers are given as [http://identifiers.org identifiers.org] URIs.
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The [http://vocabularies.wikipathways.org WikiPathways vocabularies] are for the semantic information about the pathway, data nodes, and interactions and the GPML vocabulary is for the graphical information about how the pathway diagram is laid out and represented.

Revision as of 08:58, 5 May 2017

Welcome to the WikiPathways Semantic Web Portal!

This portal describes the Semantic Web features of the WikiPathways databases, such as the Resource Description Framework (RDF) translation, the ontology, and the new nanopublications.

The WikiPathways RDF is provided as part of the monthly releases and contains the Curated and Reactome pathways. The RDF is split in two parts, the GPMLRDF part which contains a direct translation of the content in the GPML files, and a WPRDF part which contains the biology represented in the GPML

The WikiPathways Vocabularies

The WikiPathways vocabularies are for the semantic information about the pathway, data nodes, and interactions and the GPML vocabulary is for the graphical information about how the pathway diagram is laid out and represented.

Retrieved from "https://classic.wikipathways.org/index.php/Portal:Semantic_Web/Intro"