WikiPathways

From WikiPathways

(Difference between revisions)
Jump to: navigation, search
(updated curator of the week)
(March release)
(20 intermediate revisions not shown.)
Line 17: Line 17:
<!-- ANNOUNCEMENTS -->
<!-- ANNOUNCEMENTS -->
 +
<!--
|-valign="top" align="center"
|-valign="top" align="center"
|colspan="8"|<div class="frontPagePanel redBg" style="width:95%;margin:1em;width=100%">
|colspan="8"|<div class="frontPagePanel redBg" style="width:95%;margin:1em;width=100%">
<h2 class="frontPagePanel redFg">Share your pathway knowledge in the fight against COVID-19</h2>  
<h2 class="frontPagePanel redFg">Share your pathway knowledge in the fight against COVID-19</h2>  
<font size=2>'''''ACCESS'' the rapidly growing [[Portal:COVID-19|collection of COVID-19 pathways]], ''CONTRIBUTE'' your time and domain knowledge about pathway biology as a [[Help:Authors|pathway author]], and ''USE'' these pathways in [[Help:Tools_using_WikiPathways|your research]].'''</font></div>  
<font size=2>'''''ACCESS'' the rapidly growing [[Portal:COVID-19|collection of COVID-19 pathways]], ''CONTRIBUTE'' your time and domain knowledge about pathway biology as a [[Help:Authors|pathway author]], and ''USE'' these pathways in [[Help:Tools_using_WikiPathways|your research]].'''</font></div>  
 +
-->
 +
<!-- Page Content -->
<!-- Page Content -->
|-valign="top"
|-valign="top"
|<div class="frontPagePanel greenBg" style="width:95%;margin:1em;width=100%">
|<div class="frontPagePanel greenBg" style="width:95%;margin:1em;width=100%">
-
<h2 class="frontPagePanel greenFg">Welcome to WikiPathways</h2>
+
<h2 class="frontPagePanel greenFg">Try the New WikiPathways</h2>
-
<font size=2>'''WikiPathways is a database of biological pathways maintained by and for the scientific community.'''
+
<font size=2>'''Visit https://wikipathways.org to see the new version of WikiPathways.''' This is the "classic" version of WikiPathways will not be maintained for much longer.
-
''Read about our 12-year journey so far and [[WikiPathways:ExitBeta_Announcement|official exit from beta]] or our [https://doi.org/10.1093/nar/gkaa1024 2021 NAR paper]''</font></div>
+
</font></div>
<div class="frontPagePanel yellowBg" style="width:95%;margin:1em;width=100%">
<div class="frontPagePanel yellowBg" style="width:95%;margin:1em;width=100%">
Line 93: Line 96:
<div class="frontPagePanel blueBg" style="width:90%;margin:1em;width=100%;">
<div class="frontPagePanel blueBg" style="width:90%;margin:1em;width=100%;">
<h2 class="frontPagePanel blueFg">Today's Featured Pathway</h2>{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} | Curation:CurrentHighlight | true}}
<h2 class="frontPagePanel blueFg">Today's Featured Pathway</h2>{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} | Curation:CurrentHighlight | true}}
-
<h2 class="frontPagePanel blueFg">Curator of the Week</h2>{{#imgLink:DanielaDigles.png|70|center|||http://www.wikipathways.org/index.php/User:Ddigles|Daniela Digles}} [http://www.wikipathways.org/index.php/User:Ddigles Daniela Digles (University of Vienna)]
 
<h2 class="frontPagePanel blueFg" style="margin-top:0.5em;">Updates</h2>
<h2 class="frontPagePanel blueFg" style="margin-top:0.5em;">Updates</h2>
-
* '''January 2023 Release''': [[Special:RecentPathwayChanges|151 edits]] by [[WikiPathways:Statistics#Contribution_scores|13 contributors]] and [[WikiPathways:NewPathwayReleases#December_2022|11 new pathways]].
+
* '''March 2024 Release''': [[Special:RecentPathwayChanges|542 edits]] by [[WikiPathways:Statistics#Contribution_scores|9 contributors]] and [https://www.wikipathways.org/browse/new.html 10 new pathways].
-
* '''December 2022 Release''': [[Special:RecentPathwayChanges|180 edits]] by [[WikiPathways:Statistics#Contribution_scores|15 contributors]] and [[WikiPathways:NewPathwayReleases#December_2022|1 new pathway]].
+
* '''February 2024 Release''': [[Special:RecentPathwayChanges|586 edits]] by [[WikiPathways:Statistics#Contribution_scores|12 contributors]] and [https://www.wikipathways.org/browse/new.html 16 new pathways].
-
* '''November 2022 Release''': [[Special:RecentPathwayChanges|201 edits]] by [[WikiPathways:Statistics#Contribution_scores|22 contributors]] and [[WikiPathways:NewPathwayReleases#November_2022|8 new pathways]].
+
* '''January 2024 Release''': [[Special:RecentPathwayChanges|105 edits]] by [[WikiPathways:Statistics#Contribution_scores|11 contributors]] and [https://www.wikipathways.org/browse/new.html 1 new pathway].
-
* '''October 2022 Release''': [[Special:RecentPathwayChanges|203 edits]] by [[WikiPathways:Statistics#Contribution_scores|13 contributors]] and [[WikiPathways:NewPathwayReleases#October_2022|6 new pathways]].
+
* '''December 2023 Release''': [[Special:RecentPathwayChanges|120 edits]] by [[WikiPathways:Statistics#Contribution_scores|12 contributors]].
-
* '''September 2022 Release''': [[Special:RecentPathwayChanges|243 edits]] by [[WikiPathways:Statistics#Contribution_scores|12 contributors]] and [[WikiPathways:NewPathwayReleases#September_2022|1 new pathway]].
+
* '''November 2023 Release''': [[Special:RecentPathwayChanges|120 edits]] by [[WikiPathways:Statistics#Contribution_scores|10 contributors]] and [https://www.wikipathways.org/browse/new.html 3 new pathways].
-
* '''August 2022 Release''': [[Special:RecentPathwayChanges|335 edits]] by [[WikiPathways:Statistics#Contribution_scores|6 contributors]] and [[WikiPathways:NewPathwayReleases#August_2022|11 new pathways]].
+
* '''October 2023 Release''': [[Special:RecentPathwayChanges|157 edits]] by [[WikiPathways:Statistics#Contribution_scores|13 contributors]] and [https://www.wikipathways.org/browse/new.html 2 new pathways].
-
* '''July 2022 Release''': [[Special:RecentPathwayChanges|183 edits]] by [[WikiPathways:Statistics#Contribution_scores|28 contributors]] and [[WikiPathways:NewPathwayReleases#July_2022|3 new pathways]].
+
* '''September 2023 Release''': [[Special:RecentPathwayChanges|85 edits]] by [[WikiPathways:Statistics#Contribution_scores|11 contributors]] and [https://www.wikipathways.org/browse/new.html 4 new pathways].
-
* '''June 2022 Release''': [[Special:RecentPathwayChanges|146 edits]] by [[WikiPathways:Statistics#Contribution_scores|19 contributors]] and [[WikiPathways:NewPathwayReleases#June_2022|1 new pathway]].
+
* '''August 2023 Release''': [[Special:RecentPathwayChanges|207 edits]] by [[WikiPathways:Statistics#Contribution_scores|9 contributors]] and [https://www.wikipathways.org/browse/new.html 22 new pathways].
-
* '''May 2022 Release''': [[Special:RecentPathwayChanges|197 edits]] by [[WikiPathways:Statistics#Contribution_scores|21 contributors]] and [[WikiPathways:NewPathwayReleases#May_2022|5 new pathway]].
+
* '''July 2023 Release''': [[Special:RecentPathwayChanges|232 edits]] by [[WikiPathways:Statistics#Contribution_scores|32 contributors]] and [https://www.wikipathways.org/browse/new.html 12 new pathways].
&nbsp;&nbsp;&nbsp;&nbsp;[[WikiPathways:Updates|more...]]
&nbsp;&nbsp;&nbsp;&nbsp;[[WikiPathways:Updates|more...]]
<h2 class="frontPagePanel blueFg">Discussions</h2><recentChanges class="blueBg" style="border:none" namespace='90' limit='2'></recentChanges>&nbsp;&nbsp;&nbsp;&nbsp;[[WikiPathways:Discussions|more...]]
<h2 class="frontPagePanel blueFg">Discussions</h2><recentChanges class="blueBg" style="border:none" namespace='90' limit='2'></recentChanges>&nbsp;&nbsp;&nbsp;&nbsp;[[WikiPathways:Discussions|more...]]

Revision as of 16:13, 13 March 2024

Try the New WikiPathways

Visit https://wikipathways.org to see the new version of WikiPathways. This is the "classic" version of WikiPathways will not be maintained for much longer.

Find Pathways

Search

 Browse

Browse by species and category

You can search by:
  • Pathway name (Apoptosis)
  • Gene or protein name (p53)
  • Any page content (cancer)

Get Pathways

Download

Multiple formats and methods

Growth

New pathways added each month

Edit Pathways

Learn

Play with the editor tools

Request

Queue figures for conversion

We want your feedback! A quick survey to help us focus development: https://www.surveymonkey.com/r/wikipathways

Today's Featured Pathway

SARS-CoV-2 and COVID-19 pathway (Homo sapiens)
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/d/d5/WP4846_125112.svg:
Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/d/d5/WP4846_125112.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'SARS-CoV-2 and ...', 'https://classic...', 'SARS-CoV-2 and ...', 'center', 'pwthumb', '300')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4846', '300', 'center', 'SARS-CoV-2 and ...', 'pathway', 'SARS-CoV-2 and ...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPTemplateFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2986): PPFrame_DOM->expand(Object(PPNode_DOM))
  10. 9 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  12. 11 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{{Template:Toda...')
  13. 12 /var/www/wikipathways/includes/parser/Parser.php(439): Parser->internalParse('{{Template:Toda...')
  14. 13 /var/www/wikipathways/wpi/extensions/PathwayOfTheDay/PathwayOfTheDay.php(60): Parser->recursiveTagParse('{{Template:Toda...')
  15. 14 [internal function]: getPathwayOfTheDay(Object(Parser), 'Monday 29 April...', 'Curation:Curren...', 'true')
  16. 15 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getPathwayOfThe...', Array)
  17. 16 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  18. 17 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  19. 18 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| ?<!-- Specia...')
  20. 19 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| ?<!-- Specia...')
  21. 20 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| ?<!-- Specia...', Object(Title), Object(ParserOptions), true, true, 129163)
  22. 21 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| ?<!-- Specia...', Object(Title), true, true)
  23. 22 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| ?<!-- Specia...', Object(Title), true)
  24. 23 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| ?<!-- Specia...')
  25. 24 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  26. 25 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  27. 26 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  28. 27 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  29. 28 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  30. 29 {main}

Updates

    more...

Discussions

No recent changes    more...

Forum

        Google group wikipathways-discuss


    Retrieved from "https://classic.wikipathways.org/index.php/WikiPathways"
    Personal tools