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| <h2 class="frontPagePanel greenFg">Updates</h2> | | <h2 class="frontPagePanel greenFg">Updates</h2> |
| * '''January 2017 Update''': 25 new human pathways with 181 new genes. [[Download_Pathways|Download]] | | * '''January 2017 Update''': 25 new human pathways with 181 new genes. [[Download_Pathways|Download]] |
- | * December 22: Blog post about our [http://wikipathways.tumblr.com/post/154795992917/new-pathways-a-set-of-23-new-pathways-with-175 translation of mouse pathways]. | + | * December 22: Blog post about our [http://wikipathways.tumblr.com/post/154795992917/new-pathways-a-set-of-23-new-pathways-with-175 translation of mouse pathways] |
- | * '''December 2016 Update''': 201 edits by 15 contributors this month. | + | * '''December Update''': 201 edits by 15 contributors this month |
- | * '''November 2016 Update''': 143 new human genes added to pathways this month. | + | * November 11: [http://wikipathways.tumblr.com/post/153059615192/single-cell-analyses-of-x-chromosome-inactivation Enrichment analysis of single-cell dataset on differentiation] |
- | * '''October 2016 Update''': 12 new human pathways contributed this month. | + | * '''November Update''': 143 new human genes added to pathways this month |
- | * '''September 2016 Update''': 42 new human genes added this month. | + | * '''October Update''': 12 new human pathways contributed this month |
- | * '''August 2016 Update''': 60 genes and 10 new human pathways added this month. | + | * Sept 30: [http://wikipathways.tumblr.com/post/151159398097/new-pathways-the-second-batch-of-pathways-from-a New pathways featured in blog post] |
- | * June 2016: Our Resource Description Framework API is described in [http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004989 PLOS Comp Bio]. | + | * '''September Update''': 42 new human genes added this month |
- | * May 2016: Read about the Reactome pathways on this site in [http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004941 PLOS Comp Bio]. | + | * '''August Update''': 60 genes and 10 new human pathways added this month |
- | * Check our [[Special:TissueAnalyzer|TissueAnalyzer page]] to study pathway activity in different tissues. | + | * June 23: Our Resource Description Framework API is described in [http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004989 PLOS Comp Bio] |
| + | * May 20: Read about the Reactome pathways on this site in [http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004941 PLOS Comp Bio] |
| + | * Check our [[Special:TissueAnalyzer|TissueAnalyzer page]] to study pathway activity in different tissues |
| * Want to add your ORCID id to your WikiPathways account? [http://wikipathways.org/index.php/Template:User_ORCID Find out how to do it!] | | * Want to add your ORCID id to your WikiPathways account? [http://wikipathways.org/index.php/Template:User_ORCID Find out how to do it!] |
- | * [[PathwayWidget|Include an interactive pathway image]] on your own blog/website | + | * [[PathwayWidget|Embed an interactive pathway display]] on your own website |
| <h2 class="frontPagePanel greenFg">Discussions</h2><recentChanges class="greenBg" style="border:none" namespace='90' limit='3'></recentChanges> [[WikiPathways:Discussions|more...]] | | <h2 class="frontPagePanel greenFg">Discussions</h2><recentChanges class="greenBg" style="border:none" namespace='90' limit='3'></recentChanges> [[WikiPathways:Discussions|more...]] |
| <h2 class="frontPagePanel greenFg">Forum</h2><rss>http://groups.google.com/group/wikipathways-discuss/feed/rss_v2_0_msgs.xml|short|max=3</rss> [http://groups.google.com/group/wikipathways-discuss Google group wikipathways-discuss] | | <h2 class="frontPagePanel greenFg">Forum</h2><rss>http://groups.google.com/group/wikipathways-discuss/feed/rss_v2_0_msgs.xml|short|max=3</rss> [http://groups.google.com/group/wikipathways-discuss Google group wikipathways-discuss] |
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Welcome to WikiPathways BETA
WikiPathways is an open, public platform dedicated to the curation of biological pathways by and for the scientific community. More about WikiPathways...
Find Pathways
| Search
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| Browse
Browse by species and category
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You can search by:
- Pathway name (Apoptosis)
- Gene or protein name (p53)
- Any page content (cancer)
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Contribute New Pathways
| Create
Create a new pathway page
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| Suggest
Add a pathway to the wish list
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Explore Pathway Editing
| Sandbox
Play with the editor tools
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Check out the following pages:
For more information see our Help topics
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Today's Featured Pathway
Vitamin D metabolism (Homo sapiens) invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/5/56/WP1531_91209.svg:
Status:1
Message:Exception in thread "main" java.lang.NullPointerException
at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
at org.pathvisio.core.Engine.importPathway(Unknown Source)
at org.pathvisio.core.util.Converter.main(Unknown Source)
Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/5/56/WP1531_91209.svg" 2>&1 ' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
- 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
- 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
- 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
- 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
- 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Vitamin D metab...', 'https://classic...', 'Vitamin D metab...', 'center', 'pwthumb', '300')
- 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP1531', '300', 'center', 'Vitamin D metab...', 'pathway', 'Vitamin D metab...')
- 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
- 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPTemplateFrame_DOM))
- 8 /var/www/wikipathways/includes/parser/Parser.php(2986): PPFrame_DOM->expand(Object(PPNode_DOM))
- 9 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
- 10 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
- 11 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{{Template:Toda...')
- 12 /var/www/wikipathways/includes/parser/Parser.php(439): Parser->internalParse('{{Template:Toda...')
- 13 /var/www/wikipathways/wpi/extensions/PathwayOfTheDay/PathwayOfTheDay.php(60): Parser->recursiveTagParse('{{Template:Toda...')
- 14 [internal function]: getPathwayOfTheDay(Object(Parser), 'Friday 3 May 20...', 'Curation:Featur...', 'true')
- 15 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getPathwayOfThe...', Array)
- 16 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
- 17 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
- 18 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('__NOEDITSECTION...')
- 19 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('__NOEDITSECTION...')
- 20 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('__NOEDITSECTION...', Object(Title), Object(ParserOptions), true, true, 91210)
- 21 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('__NOEDITSECTION...', Object(Title), true, true)
- 22 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('__NOEDITSECTION...', Object(Title), true)
- 23 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('__NOEDITSECTION...')
- 24 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
- 25 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
- 26 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
- 27 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
- 28 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
- 29 {main}
Updates
DiscussionsNo recent changes more...
Forum Google group wikipathways-discuss
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