Serine biosynthesis (Saccharomyces cerevisiae)

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ArcPathVisio Brace Ellipse EndoplasmicReticulum GolgiApparatus HexagonPathVisio MimDegradation Mitochondria Octagon PentagonPathVisio Rectangle RoundedRectangle SarcoplasmicReticulum TriangleEquilateralEast TrianglePathVisio none H2O3-phospho-D-glycerate3-phospho-L-serine3-Phosphohydroxypyruvate2-oxoglutarateNADL-serineL-glutamateSER1glycolysis I (from glucose 6-phosphate)SER2phosphateNADHcysteine biosynthesis from homocysteineglycine biosynthesis ISER3SER33Name: Serine biosynthesisOrganism: Saccharomyces cerevisiae


Description

L-serine biosynthesis is a major metabolic pathway in many organisms. Its end product, L-serine, is not only used in protein synthesis, but also as a precursor for the biosynthesis of glycine, cysteine, tryptophan, and phospholipids. In addition, it directly or indirectly serves as a source of one-carbon units for the biosynthesis of various compounds.

In the pathway described here, which operates in bacteria, yeast, some protists, plant plastids and animals, serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis.

Regulation of the pathway is mainly accomplished by feedback inhibition of the enzyme that catalyzes the first committed step, SER3/SER33, phosphoglycerate dehydrogenase. The second enzyme in the pathway, SER1, phosphoserine transaminase, requires pyridoxal 5'-phosphate (PLP) as a cofactor and is also required for the biosynthesis of PLP itself. Thus the cell must ensure that the supply of PLP is adequate. Little biochemical work has been done on the final enzyme of the pathway, SER2, phosphoserine phosphatase.

Description from https://pathway.yeastgenome.org/.

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Quality Tags

Image:Curated.pngApproved version

Ontology Terms

Pathway Ontology : DNA replication pathway
 

Bibliography

  1. ''L-serine biosynthesis I''; YeasPathways,

History

View all...
CompareRevisionActionTimeUserComment
136572
Approved
view00:10, 12 February 2025KhanspersOntology Term : 'classic metabolic pathway' added !
136571view00:10, 12 February 2025KhanspersModified description
136570view00:08, 12 February 2025Khanspersremoved GenMAPP comments, updated lit ref
136569view00:07, 12 February 2025Khanspersupdate based on YeastPathways, added pathway nodes, added literature
117338view11:51, 20 May 2021EweitzModified title
97092view08:08, 27 April 2018EgonwReplaced secondary ChEBI identifiers with primary identifiers.
97071view15:45, 26 April 2018Youssefwalidconnected lines and added labels
69877view18:11, 11 July 2013EgonwMarked a few DataNodes with CAS registry numbers as metabolites.
69573view20:28, 8 July 2013MaintBotUpdated to 2013 gpml schema
67638view11:37, 26 June 2013DdiglesOntology Term : 'serine metabolic pathway' added !
41791view04:47, 2 March 2011MaintBotRemoved redundant pathway information and comments
21646view11:32, 14 November 2008MaintBot[[Pathway:Saccharomyces cerevisiae:Serine Biosynthesis]] moved to [[Pathway:WP459]]: Moved to stable identifier
12843view08:05, 17 May 2008MaintBotautomated metabolite conversion
8921view14:12, 7 January 2008MaintBotAdded to category $category
8919view14:12, 7 January 2008M.BraymerUploaded new pathway

External references

DataNodes

View all...
Name  ↓Type  ↓Database reference  ↓Comment  ↓
2-oxoglutarateMetaboliteCHEBI:16810 (ChEBI)
3-PhosphohydroxypyruvateMetaboliteCHEBI:18110 (ChEBI)
3-phospho-D-glycerateMetaboliteCHEBI:58272 (ChEBI)
3-phospho-L-serineMetaboliteCHEBI:57524 (ChEBI)
H2OMetaboliteCHEBI:15377 (ChEBI)
L-glutamateMetabolite56-86-0 (CAS)
L-serineMetabolite56-45-1 (CAS)
NADMetaboliteCHEBI:13389 (ChEBI)
NADHMetaboliteCHEBI:16908 (ChEBI)
SER1GeneProductS000005710 (SGD)
SER2GeneProductS000003440 (SGD)
SER33GeneProductS000001336 (SGD)
SER3GeneProductS000000883 (SGD)
cysteine biosynthesis from homocysteinePathway
glycine biosynthesis IPathwayWP261 (WikiPathways)
glycolysis I (from glucose 6-phosphate)PathwayWP253 (WikiPathways)
phosphateMetabolite14265-44-2 (CAS)

Annotated Interactions

No annotated interactions

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