Hepatitis B infection (Homo sapiens)
From WikiPathways
Description
The bepatitis B virus (HBV) is a virus in the Hepadnaviridae family which infects hepatocytes in the liver. It causes both acute and chronic infections, and prolonged chronic infection can lead to complications such as cirrhosis and an increased risk of hepatocellular carcinoma (HCC).
The left side of the pathway describes the pathogenesis of HBV. The virus binds NTCP (SLC10A1) and is subsequently endocytosed. It is transported to the nucleus where viral polymerase creates covalently closed circular DNA (cccDNA). Using the host RNA polymerase, this is transcribed into viral mRNAs. Viral DNA polymerase then synthesizes viral DNA via its reverse transcriptase activity. Assembled viral particles exit the cell via the ESCRT pathway.
The HBV regulatory protein HBx interferes with many cellular processes including transcription, signal transduction, cell cycle progress, protein degradation, apoptosis and chromosomal stability.
This pathway was developed based on https://www.kegg.jp/dbget-bin/www_bget?pathway+hsa05161. Protein phosphorylation sites were added based on information from PhosphoSitePlus (R), www.phosphosite.orgQuality Tags
Ontology Terms
Bibliography
- ''KEGG Hepatitis B Pathway''; https://www.kegg.jp/dbget-bin/www_bget?pathway+hsa05161,
- Hornbeck PV, Zhang B, Murray B, Kornhauser JM, Latham V, Skrzypek E; ''PhosphoSitePlus, 2014: mutations, PTMs and recalibrations.''; Nucleic Acids Res, 2015 PubMed Europe PMC Scholia
- Lamontagne RJ, Bagga S, Bouchard MJ; ''Hepatitis B virus molecular biology and pathogenesis.''; Hepatoma Res, 2016 PubMed Europe PMC Scholia
History
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External references
DataNodes
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Name | Type | Database reference | Comment |
---|---|---|---|
AKT1 | GeneProduct | ENSG00000142208 (Ensembl) ![]() | Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:11651 |
AKT2 | GeneProduct | ENSG00000105221 (Ensembl) ![]() | Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:11652 |
AKT3 | GeneProduct | ENSG00000117020 (Ensembl) ![]() | Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:23797 |
APAF1 | GeneProduct | ENSG00000120868 (Ensembl) ![]() | |
ARAF | GeneProduct | ENSG00000078061 (Ensembl) ![]() | |
ATF2 | GeneProduct | ENSG00000115966 (Ensembl) ![]() | |
ATF4 | GeneProduct | ENSG00000128272 (Ensembl) ![]() | |
ATF6B | GeneProduct | ENSG00000213676 (Ensembl) ![]() | |
ATP6AP1 | GeneProduct | ENSG00000071553 (Ensembl) ![]() | |
BAD | GeneProduct | ENSG00000002330 (Ensembl) ![]() |
|
BAX | GeneProduct | ENSG00000087088 (Ensembl) ![]() | |
BCL2 | GeneProduct | ENSG00000171791 (Ensembl) ![]() | |
BID | GeneProduct | ENSG00000015475 (Ensembl) ![]() | |
BIRC5 | GeneProduct | ENSG00000089685 (Ensembl) ![]() | |
BRAF | GeneProduct | ENSG00000157764 (Ensembl) ![]() | |
CASP10 | GeneProduct | ENSG00000003400 (Ensembl) ![]() | |
CASP12 | GeneProduct | ENSG00000204403 (Ensembl) ![]() | |
CASP3 | GeneProduct | ENSG00000164305 (Ensembl) ![]() | |
CASP8 | GeneProduct | ENSG00000064012 (Ensembl) ![]() | |
CASP9 | GeneProduct | ENSG00000132906 (Ensembl) ![]() | |
CDKN1A | GeneProduct | ENSG00000124762 (Ensembl) ![]() | |
CHUK | GeneProduct | ENSG00000213341 (Ensembl) ![]() |
|
CREB1 | GeneProduct | ENSG00000118260 (Ensembl) ![]() | |
CREB3 | GeneProduct | ENSG00000107175 (Ensembl) ![]() | |
CREB3L1 | GeneProduct | ENSG00000157613 (Ensembl) ![]() | |
CREB3L2 | GeneProduct | ENSG00000182158 (Ensembl) ![]() | |
CREB3L3 | GeneProduct | ENSG00000060566 (Ensembl) ![]() | |
CREB3L4 | GeneProduct | ENSG00000143578 (Ensembl) ![]() | |
CREB5 | GeneProduct | ENSG00000146592 (Ensembl) ![]() | |
CREBBP | GeneProduct | ENSG00000005339 (Ensembl) ![]() | |
CXCL8 | GeneProduct | ENSG00000169429 (Ensembl) ![]() | |
CYCS | GeneProduct | ENSG00000172115 (Ensembl) ![]() | |
Ca2+ | Metabolite | CHEBI:29108 (ChEBI) ![]() | |
DDB1 | GeneProduct | ENSG00000167986 (Ensembl) ![]() | |
DDB2 | GeneProduct | ENSG00000134574 (Ensembl) ![]() | |
DDX3X | GeneProduct | ENSG00000215301 (Ensembl) ![]() | |
DDX58 | GeneProduct | ENSG00000107201 (Ensembl) ![]() | |
DNA Damage Response | Pathway | WP707 (WikiPathways) ![]() | |
EGR2 | GeneProduct | ENSG00000122877 (Ensembl) ![]() | |
EGR3 | GeneProduct | ENSG00000179388 (Ensembl) ![]() | |
ELK1 | GeneProduct | ENSG00000126767 (Ensembl) ![]() | |
EP300 | GeneProduct | ENSG00000100393 (Ensembl) ![]() | |
ESCRT Pathway | Pathway | ||
FADD | GeneProduct | ENSG00000168040 (Ensembl) ![]() | |
FAS | GeneProduct | ENSG00000026103 (Ensembl) ![]() | |
FASLG | GeneProduct | ENSG00000117560 (Ensembl) ![]() | |
FOS | GeneProduct | ENSG00000170345 (Ensembl) ![]() | |
GRB2 | GeneProduct | ENSG00000177885 (Ensembl) ![]() | |
HRAS | GeneProduct | ENSG00000174775 (Ensembl) ![]() | |
HSPG2 | GeneProduct | ENSG00000142798 (Ensembl) ![]() | |
IFIH1 | GeneProduct | ENSG00000115267 (Ensembl) ![]() | |
IFNA10 | GeneProduct | 3446 (Entrez Gene) ![]() | |
IFNA13 | GeneProduct | 3447 (Entrez Gene) ![]() | |
IFNA1 | GeneProduct | 3439 (Entrez Gene) ![]() | |
IFNA14 | GeneProduct | 3448 (Entrez Gene) ![]() | |
IFNA16 | GeneProduct | 3449 (Entrez Gene) ![]() | |
IFNA17 | GeneProduct | 3451 (Entrez Gene) ![]() | |
IFNA21 | GeneProduct | 3452 (Entrez Gene) ![]() | |
IFNA2 | GeneProduct | 3440 (Entrez Gene) ![]() | |
IFNA4 | GeneProduct | 3441 (Entrez Gene) ![]() | |
IFNA5 | GeneProduct | 3442 (Entrez Gene) ![]() | |
IFNA6 | GeneProduct | 3443 (Entrez Gene) ![]() | |
IFNA7 | GeneProduct | 3444 (Entrez Gene) ![]() | |
IFNA8 | GeneProduct | 3445 (Entrez Gene) ![]() | |
IFNAR1 | GeneProduct | ENSG00000142166 (Ensembl) ![]() | |
IFNB1 | GeneProduct | ENSG00000171855 (Ensembl) ![]() | |
IKBKB | GeneProduct | ENSG00000104365 (Ensembl) ![]() |
|
IKBKE | GeneProduct | ENSG00000263528 (Ensembl) ![]() | |
IKBKG | GeneProduct | ENSG00000269335 (Ensembl) ![]() |
|
IL6 | GeneProduct | ENSG00000136244 (Ensembl) ![]() | |
IRAK1 | GeneProduct | ENSG00000184216 (Ensembl) ![]() | |
IRAK4 | GeneProduct | ENSG00000198001 (Ensembl) ![]() | |
IRF3 | GeneProduct | ENSG00000126456 (Ensembl) ![]() | |
IRF7 | GeneProduct | ENSG00000185507 (Ensembl) ![]() | |
JAK1 | GeneProduct | ENSG00000162434 (Ensembl) ![]() | |
JAK2 | GeneProduct | ENSG00000096968 (Ensembl) ![]() | |
JAK3 | GeneProduct | ENSG00000105639 (Ensembl) ![]() | |
JUN | GeneProduct | ENSG00000177606 (Ensembl) ![]() | |
KRAS | GeneProduct | ENSG00000133703 (Ensembl) ![]() | |
MAP2K1 | GeneProduct | 5604 (Entrez Gene) ![]() | |
MAP2K2 | GeneProduct | 5605 (Entrez Gene) ![]() | |
MAP2K3 | GeneProduct | ENSG00000034152 (Ensembl) ![]() | |
MAP2K4 | GeneProduct | ENSG00000065559 (Ensembl) ![]() | |
MAP2K6 | GeneProduct | ENSG00000108984 (Ensembl) ![]() | |
MAP2K7 | GeneProduct | ENSG00000076984 (Ensembl) ![]() | |
MAP3K1 | GeneProduct | ENSG00000095015 (Ensembl) ![]() | |
MAP3K7 | GeneProduct | ENSG00000135341 (Ensembl) ![]() | |
MAPK10 | GeneProduct | ENSG00000109339 (Ensembl) ![]() | |
MAPK11 | GeneProduct | ENSG00000185386 (Ensembl) ![]() | |
MAPK12 | GeneProduct | ENSG00000188130 (Ensembl) ![]() | |
MAPK13 | GeneProduct | ENSG00000156711 (Ensembl) ![]() | |
MAPK14 | GeneProduct | ENSG00000112062 (Ensembl) ![]() | |
MAPK1 | GeneProduct | 5594 (Entrez Gene) ![]() | |
MAPK3 | GeneProduct | 5595 (Entrez Gene) ![]() | |
MAPK8 | GeneProduct | ENSG00000107643 (Ensembl) ![]() | |
MAPK9 | GeneProduct | ENSG00000050748 (Ensembl) ![]() | |
MAVS | GeneProduct | ENSG00000088888 (Ensembl) ![]() | |
MMP9 | GeneProduct | ENSG00000100985 (Ensembl) ![]() | |
MYC | GeneProduct | ENSG00000136997 (Ensembl) ![]() | |
MYD88 | GeneProduct | ENSG00000172936 (Ensembl) ![]() | |
NFATC1 | GeneProduct | ENSG00000131196 (Ensembl) ![]() | |
NFATC2 | GeneProduct | ENSG00000101096 (Ensembl) ![]() | |
NFATC3 | GeneProduct | ENSG00000072736 (Ensembl) ![]() | |
NFATC4 | GeneProduct | ENSG00000100968 (Ensembl) ![]() | |
NFKB1 | GeneProduct | 4790 (Entrez Gene) ![]() | |
NRAS | GeneProduct | ENSG00000213281 (Ensembl) ![]() | |
PCNA | GeneProduct | ENSG00000132646 (Ensembl) ![]() | |
PIK3CA | GeneProduct | ENSG00000121879 (Ensembl) ![]() | Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:18706 |
PIK3CB | GeneProduct | ENSG00000051382 (Ensembl) ![]() | Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:74769 |
PIK3CD | GeneProduct | ENSG00000171608 (Ensembl) ![]() | Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:18707 |
PIK3R1 | GeneProduct | ENSG00000145675 (Ensembl) ![]() | Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:18708 |
PIK3R2 | GeneProduct | ENSG00000105647 (Ensembl) ![]() | Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:18709 |
PIK3R3 | GeneProduct | ENSG00000117461 (Ensembl) ![]() | Homology Mapping from Mus musculus to Homo sapiens: Original ID = L:75669 |
PRKCA | GeneProduct | ENSG00000154229 (Ensembl) ![]() | |
PRKCB | GeneProduct | ENSG00000166501 (Ensembl) ![]() | |
PRKCG | GeneProduct | ENSG00000126583 (Ensembl) ![]() | |
PTK2B | GeneProduct | ENSG00000120899 (Ensembl) ![]() | |
RAF1 | GeneProduct | ENSG00000132155 (Ensembl) ![]() | |
RELA | GeneProduct | ENSG00000173039 (Ensembl) ![]() | |
SLC10A1 | GeneProduct | ENSG00000100652 (Ensembl) ![]() | |
SMAD2 | GeneProduct | ENSG00000175387 (Ensembl) ![]() | |
SMAD3 | GeneProduct | ENSG00000166949 (Ensembl) ![]() | |
SMAD4 | GeneProduct | ENSG00000141646 (Ensembl) ![]() | |
SOS1 | GeneProduct | ENSG00000115904 (Ensembl) ![]() | |
SOS2 | GeneProduct | ENSG00000100485 (Ensembl) ![]() | |
SRC | GeneProduct | ENSG00000197122 (Ensembl) ![]() | |
STAT1 | GeneProduct | ENSG00000115415 (Ensembl) ![]() | |
STAT2 | GeneProduct | ENSG00000170581 (Ensembl) ![]() | |
STAT3 | GeneProduct | ENSG00000168610 (Ensembl) ![]() | |
STAT4 | GeneProduct | ENSG00000138378 (Ensembl) ![]() | |
STAT5A | GeneProduct | ENSG00000126561 (Ensembl) ![]() | |
STAT5B | GeneProduct | ENSG00000173757 (Ensembl) ![]() | |
STAT6 | GeneProduct | STAT6 (HGNC) ![]() | |
TAB1 | GeneProduct | ENSG00000100324 (Ensembl) ![]() | |
TAB2 | GeneProduct | ENSG00000055208 (Ensembl) ![]() | |
TBK1 | GeneProduct | ENSG00000183735 (Ensembl) ![]() | |
TGFB1 | GeneProduct | ENSG00000105329 (Ensembl) ![]() | |
TGFB2 | GeneProduct | ENSG00000092969 (Ensembl) ![]() | |
TGFB3 | GeneProduct | ENSG00000119699 (Ensembl) ![]() | |
TGFBR1 | GeneProduct | ENSG00000106799 (Ensembl) ![]() | |
TGFBR2 | GeneProduct | ENSG00000163513 (Ensembl) ![]() | |
TICAM1 | GeneProduct | ENSG00000127666 (Ensembl) ![]() | |
TICAM2 | GeneProduct | ENSG00000243414 (Ensembl) ![]() | |
TIRAP | GeneProduct | ENSG00000150455 (Ensembl) ![]() | |
TLR2 | GeneProduct | ENSG00000137462 (Ensembl) ![]() | |
TLR3 | GeneProduct | ENSG00000164342 (Ensembl) ![]() | |
TLR4 | GeneProduct | ENSG00000136869 (Ensembl) ![]() | |
TNF | GeneProduct | ENSG00000232810 (Ensembl) ![]() | |
TRAF3 | GeneProduct | ENSG00000131323 (Ensembl) ![]() | |
TRAF6 | GeneProduct | ENSG00000175104 (Ensembl) ![]() | |
TYK2 | GeneProduct | ENSG00000105397 (Ensembl) ![]() | |
VDAC3 | GeneProduct | ENSG00000078668 (Ensembl) ![]() | |
YWHAB | GeneProduct | ENSG00000166913 (Ensembl) ![]() | |
YWHAQ | GeneProduct | ENSG00000134308 (Ensembl) ![]() | |
YWHAZ | GeneProduct | ENSG00000164924 (Ensembl) ![]() |
Annotated Interactions
No annotated interactions