Ureide biosynthesis (Oryza sativa)

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ArcPathVisio Brace Ellipse EndoplasmicReticulum GolgiApparatus HexagonPathVisio MimDegradation Mitochondria Octagon PentagonPathVisio Rectangle RoundedRectangle SarcoplasmicReticulum TriangleEquilateralEast TrianglePathVisio none SpontaneousNADHXanthosinePhosphateCO2Urate oxidaseNADHH2ORibose 1-phosphateXanthine dehydrogenaseH2O25-hydroxy-2-oxo-4-ureido-2,5-dihydro-1H imidazole-5-carboxylateXanthine5-hydroxyisourateInosine-5'-phosphateH2OUrateAllantoinxanthosine-5-phosphateH2OPhosphateAllantoic acidH2OO2H2ONAD+IMP dehydrogenaseIMP dehydrogenaseIMP dehydrogenaseIMP dehydrogenaseIMP dehydrogenaseIMP dehydrogenaseIMP dehydrogenaseH2ONAD+Name: Ureide biosynthesisLast Modified: 5/17/2012Organism: Oryza sativa


Description

No description

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Quality Tags

Image:Curated.pngApproved version
Image:Featured.pngFeatured version

Ontology Terms

Pathway Ontology : classic metabolic pathway
 

Bibliography

  1. Ohyama, T., Kumazawa, K; '' Incorporation of 15N into various nitrogenous compounds in intact soybean nodules after exposure to 15N(2) gas''; Plant physiology and biochemistry, 1978 DOI Scholia
  2. Schubert KR; ''Enzymes of Purine Biosynthesis and Catabolism in Glycine max: I. COMPARISON OF ACTIVITIES WITH N(2) FIXATION AND COMPOSITION OF XYLEM EXUDATE DURING NODULE DEVELOPMENT.''; Plant Physiol, 1981 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
137468
Approved
Featured
view14:55, 2 March 2025EgonwModified description
124757view10:02, 8 December 2022EgonwAdded the missing xref
107220view14:31, 17 September 2019MaintBotChEBI identifier normalization
106912view13:38, 17 September 2019MaintBotHMDB identifier normalization
87851view11:51, 25 July 2016MirellaKalafatiOntology Term : 'classic metabolic pathway' added !
71861view20:51, 18 October 2013EgonwAdded a missing metabolite identifiers.
69211view18:28, 8 July 2013MaintBotUpdated to 2013 gpml schema
48293view03:56, 18 May 2012MaintBotAutomatic update of PubChem xrefs
41509view01:50, 2 March 2011MaintBotRemoved redundant pathway information and comments
32167view14:06, 14 August 2009MaintBotFixed group labels
29651view02:07, 24 May 2009AlexanderPicoModified description
29089view19:59, 1 April 2009PjaiswalRedirected Xrefs to Rice Ensembl genes
29088view19:56, 1 April 2009Pjaiswalgene xrefs point to Gramene. The previous links to ensembl don't work
29041view12:27, 27 March 2009MaintBot
28072view12:56, 23 January 2009ThomasModified categories
28046view10:23, 23 January 2009Thomas
28045view10:22, 23 January 2009ThomasNew pathway

External references

DataNodes

View all...
Name  ↓Type  ↓Database reference  ↓Comment  ↓
5-hydroxy-2-oxo-4-ureido-2,5-dihydro-1H imidazole-5-carboxylateMetabolite443736 (PubChem-compound)
5-hydroxyisourateMetaboliteCHEBI:59562 (ChEBI)
Allantoic acidMetaboliteCHEBI:30837 (ChEBI)
AllantoinMetaboliteCHEBI:15676 (ChEBI)
CO2MetaboliteCHEBI:16526 (ChEBI)
H2O2MetaboliteCHEBI:16240 (ChEBI)
H2OMetaboliteHMDB0002111 (HMDB)
IMP dehydrogenaseGeneProductLOC_Os01g69900 (Rice Ensembl Gene)
IMP dehydrogenaseGeneProductLOC_Os01g73040 (Rice Ensembl Gene)
IMP dehydrogenaseGeneProductLOC_Os03g56800 (Rice Ensembl Gene)
IMP dehydrogenaseGeneProductLOC_Os07g42440 (Rice Ensembl Gene)
IMP dehydrogenaseGeneProductLOC_Os11g06930 (Rice Ensembl Gene)
IMP dehydrogenaseGeneProductLOC_Os11g30350 (Rice Ensembl Gene)
IMP dehydrogenaseGeneProductLOC_Os12g07190 (Rice Ensembl Gene)
Inosine-5'-phosphateMetaboliteCHEBI:17202 (ChEBI)
NAD+MetaboliteCHEBI:15846 (ChEBI)
NADHMetaboliteCHEBI:16908 (ChEBI)
O2MetaboliteCHEBI:15379 (ChEBI)
PhosphateMetaboliteCHEBI:18367 (ChEBI)
Ribose 1-phosphateMetaboliteCHEBI:16300 (ChEBI)
Urate oxidaseGeneProductLOC_Os01g64520 (Rice Ensembl Gene)
UrateMetaboliteCHEBI:17775 (ChEBI)
Xanthine dehydrogenaseGeneProductLOC_Os03g31550 (Rice Ensembl Gene)
XanthineMetaboliteCHEBI:17712 (ChEBI)
XanthosineMetaboliteCHEBI:18107 (ChEBI)
xanthosine-5-phosphateMetaboliteCHEBI:15652 (ChEBI)

Annotated Interactions

No annotated interactions

Retrieved from "https://classic.wikipathways.org/index.php/Pathway:WP617"
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