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From WikiPathways

GMT Gene Sets

Click here to download the current pathways marked with the Approved version curation tag, in GMT format.

Plain text

Click on one of the links below to download the current pathways marked with the Approved version curation tag, in plain text format. This format contains a list of all data nodes, with the identifier in the first column, and the database system in the second column.

Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Caulobacter vibrioides Danio rerio Daphnia magna Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Zea mays Plasmodium falciparum

GPML

Click on one of the links below to download the current pathways marked with the Approved version curation tag, in GPML format. You can view and edit GPML files in PathVisio. You can also use GPML files for analysis in both PathVisio and Cytoscape using the WikiPathways app.

Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Caulobacter vibrioides Danio rerio Daphnia magna Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Zea mays Plasmodium falciparum

BioPAX

Click on one of the links below to download the current pathways marked with the Approved version curation tag, in BioPAX level 3 format.

Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Caulobacter vibrioides Danio rerio Daphnia magna Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Zea mays Plasmodium falciparum

Eu.Gene

Click on one of the links below to download the current pathways marked with the Approved version curation tag, in the Eu.Gene format (pwf). Eu.Gene is a tool for microarray analysis in context of biological pathways (read more).

Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Caulobacter vibrioides Danio rerio Daphnia magna Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Zea mays Plasmodium falciparum

Graphical formats

PDF

Click on one of the links below to download the current pathways marked with the Approved version curation tag, in Portable Document Format (PDF).

Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Caulobacter vibrioides Danio rerio Daphnia magna Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Zea mays Plasmodium falciparum

SVG

Click on one of the links below to download the current pathways marked with the Approved version curation tag, in SVG format. The SVG files can be used to create high quality images for publication purposes. You can edit and convert the SVG files using Inkscape.

Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Caulobacter vibrioides Danio rerio Daphnia magna Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Zea mays Plasmodium falciparum

PNG

Click on one of the links below to download the current pathways marked with the Approved version curation tag, in the Portable Network Graphics (png) format.

Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Caulobacter vibrioides Danio rerio Daphnia magna Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Zea mays Plasmodium falciparum