Download Pathways old

From WikiPathways

Contents [hide] 1 GPML 2 BioPAX 3 Eu.Gene 4 Plain text 5 PDF 6 SVG 7 PNG 8 GMT Gene Sets

Pathways available for download have been explicitly marked with the Curated collection curation tag. This includes pathways that have been carefully curated and typically excludes draft or test pathways not intended for distribution. This is the recommended set for download.

A larger set of pathway which includes non-curated content is available here.

GPML

The pathways from the Human collection of Reactome are available through the Reactome portal at WikiPathways. Click here to download them.

Click on one of the links below to download all pathways in GPML format. You can view and edit GPML files in PathVisio. You can also use GPML files for analysis in both PathVisio and Cytoscape using the WikiPathways app.

Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Caulobacter vibrioides Danio rerio Daphnia magna Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Zea mays Plasmodium falciparum

BioPAX

Click on one of the links below to download all pathways in BioPAX level 3 format.

Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Caulobacter vibrioides Danio rerio Daphnia magna Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Zea mays Plasmodium falciparum

Eu.Gene

Click on one of the links below to download all pathways in the Eu.Gene format (pwf). Eu.Gene is a tool for microarray analysis in context of biological pathways (read more).

Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Caulobacter vibrioides Danio rerio Daphnia magna Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Zea mays Plasmodium falciparum

Plain text

Click on one of the links below to download all pathways in plain text format. This format contains a list of all datanodes, with the identifier in the first column, and the database system in the second column.

Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Caulobacter vibrioides Danio rerio Daphnia magna Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Zea mays Plasmodium falciparum

PDF

Click on one of the links below to download all pathways in Portable Document Format (PDF).

Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Caulobacter vibrioides Danio rerio Daphnia magna Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Zea mays Plasmodium falciparum

SVG

Click on one of the links below to download all pathways in SVG format. The SVG files can be used to create high quality images for publication purposes. You can edit and convert the SVG files using Inkscape.

Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Caulobacter vibrioides Danio rerio Daphnia magna Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Zea mays Plasmodium falciparum

PNG

Click on one of the links below to download all pathways in the Portable Network Graphics (png) format.

Acetobacterium woodii Anopheles gambiae Arabidopsis thaliana Bacillus subtilis Brassica napus Bos taurus Caenorhabditis elegans Canis familiaris Caulobacter vibrioides Danio rerio Daphnia magna Drosophila melanogaster Escherichia coli Equus caballus Gallus gallus Gibberella zeae Homo sapiens Hordeum vulgare Mus musculus Mycobacterium tuberculosis Oryza sativa Ovis aries Pan troglodytes Populus trichocarpa Rattus norvegicus Saccharomyces cerevisiae Solanum lycopersicum Sus scrofa Triticum aestivum Vitis vinifera Zea mays Plasmodium falciparum

GMT Gene Sets

You can download the species-specific WikiPathways gene set collections here. This file gets updated every day.