MediaWiki:Curationtags-definition.xml

From WikiPathways

<?xml version="1.0"?> <TagDefinitions>

<Tag

name="Curation:Tutorial"
displayName="Test pathway"
description="Use this tag to mark the pathway you create while doing the tutorial. A tutorial pathway will not be included in the download archives and all tutorial pathways will be periodically deleted."
bureaucrat="1"
icon="Tutorial.png"

/>

<Tag

name="Curation:UnderConstruction"
displayName="Under construction"
newEditHighlight="yes"
highlightAction="underConstruction"
description="Use this tag to notify other users that this pathway is still under construction."
bureaucrat="1"
icon="UnderConstruction.png"

/> <Tag

name="Curation:AnalysisCollection"
displayName="Approved version"
description="Use this tag to include the pathway in the curated collection"
useRevision="true"
shortName="Approved"
topTag="1"
icon="Curated.png"

/>

<Tag

name="Curation:FeaturedPathway"
displayName="Featured version"
description="Use this tag to include the pathway in the featured pathways collection"
useRevision="true"
shortName="Featured"
topTag="1"
default="1"
icon="Featured.png"

/>

<Tag

name="Curation:CurrentHighlight"
displayName="Current highlight"
description="Use this tag to highlight subsets of pathways related to a current topic."
shortName="Current"

/>

<Tag

name="Curation:MissingDescription"
displayName="Add description"
description="Use this tag to mark pathways with a missing or incomplete description field"
bureaucrat="1"
icon="MissingDescription.png"

/>

<Tag

name="Curation:NeedsReference"
displayName="Add references"
description="Use this tag when the pathway requires a literature reference."
bureaucrat="1"
icon="NeedsRef.png"

/>

<Tag

name="Curation:MissingXRef"
displayName="Annotate nodes"
description="Use this tag when one or more genes/proteins/metabolites are missing a database reference."
bureaucrat="1"
icon="MissingXref.png"

/>

<Tag

name="Curation:NoInteractions"
displayName="Fix interactions"
description="Use this tag when one or more lines that represent an interaction are not properly linked."
bureaucrat="1"
icon="Unconnected.png"

/>

<Tag

 name="Curation:NeedsWork"
 displayName="Needs work"
 description="Use this tag to mark pathways in need of curation. Try to suggest specific steps that would improve the content."
 topTag="1"
 icon="NeedsWork.png"

/>

<Tag

 name="Curation:Stub"
 displayName="Incomplete"
 description="This is a Pathway for an interesting / useful topic, but it's incomplete, needs to be improved, and more details need to be filled out."
 bureaucrat="1"
 icon="Stub.png"

/>

<Tag

 name="Curation:NonTypicalPathway"
 displayName="Annotated lists"
 description="Use this tag to notify the community that the contents do not represent a typical pathway. Please explain what the pathway represents in the tag text."
 icon="NonTypical.png"

/>

<Tag

name="Curation:Hypothetical"
displayName="Hypothetical"
description="Use this tag to note a hypothetical pathway."
icon="Hypothetical.png"

/>

<Tag

name="Curation:InappropriateContent"
displayName="Inappropriate"
description="Use this tag to mark inappropriate content. Please specify in the tag text which part of the pathway is inappropriate."
bureaucrat="1"

/>

<Tag

name="Curation:OpenAccess"
displayName="Open access publication"
description="Use this tag to identify pathways based on figures published in Open Access journals."

/>

<Tag

 name="Curation:AOP"
 displayName="Community: Adverse Outcome Pathways"
 useRevision="true"
 description="Pathways with this tag are relevant for the Adverse Outcome Pathways (AOPs) portal. This tag applies to the revision you are viewing when adding or editing the tag."
 shortName="AOP"

/>

<Tag

 name="Curation:IEM"
 displayName="Community: Inborn Errors of Metabolism (IEM)"
 useRevision="true"
 description="Pathways with this tag are relevant for the Inborn Errors of Metabolism portal. This tag applies to the revision you are viewing when adding or editing the tag."
 shortName="IEM"

/>

<Tag

 name="Curation:COVID19"
 displayName="Community: COVID-19"
 useRevision="true"
 description="Pathways with this tag are relevant for the COVID-19 portal. This tag applies to the revision you are viewing when adding or editing the tag."
 shortName="COVID"

/>

<Tag

 name="Curation:PancCanNet"
 displayName="Community: PancCanNet"
 useRevision="true"
 description="Pathways with this tag are relevant for the PancCanNet portal. This tag applies to the revision you are viewing when adding or editing the tag."
 shortName="PancCanNet"

/>

<Tag

name="Curation:CIRM_Related"
displayName="Community: CIRM related"
description="Use this tag to mark pathways that are related to the research topics of CIRM grantees. CIRM is the California Institute for Regenerative Medicine and maintains a WikiPathways portal highlighting CIRM-related pathways."
shortName="CIRM"

/>

<Tag

name="Curation:Lipids"
displayName="Community: Lipids and LIPID MAPS"
useRevision="true"
description="Pathways with this tag describe lipids, and several originate from or have been developed together with the LIPID MAPS project. This tag applies to the revision you are viewing when adding or editing the tag."
shortName="Lipids"

/>

<Tag

 name="Curation:RareDiseases"
 displayName="Community: Rare Diseases"
 useRevision="true"
 description="Pathways with this tag are relevant for the Rare Diseases portal. This tag applies to the revision you are viewing when adding or editing the tag."
 shortName="RARE"

/>

<Tag

name="Curation:Reactome_Approved"
displayName="Community: Reactome"
useRevision="true"
description="Revisions with this tag are included in the curated Reactome archive. Reactome is a peer-reviewed pathway database and utilizes WikiPathways as part of its community curation and distribution effort."
shortName="Reactome"

/>

<Tag

name="Curation:SGD_Approved"
displayName="Community: SGD"
useRevision="true"
description="Pathways with this tag will be included in the SGD pathway archive. This tag applies to the revision you are viewing when adding or editing the tag."
shortName="SGD"

/>

<Tag

name="Curation:WormBase_Approved"
displayName="Community: WormBase"
useRevision="true"
description="Pathways with this tag will be included in the WormBase pathway archive. This tag applies to the revision you are viewing when adding or editing the tag."
shortName="WormBase"

/>

<Tag

name="Curation:SkeletalDysplasia"
displayName="Community: Skeletal Dysplasia"
useRevision="true"
description="Pathways with this tag are relevant for the Skeletal Dysplasia portal. This tag applies to the revision you are viewing when adding or editing the tag"
shortName="Skeletal Dysplasia"

/>

<Tag

name="Curation:CPTAC"
displayName="Community: CPTAC"
useRevision="true"
description="Pathways with this tag are relevant for the CPTAC portal. This tag applies to the revision you are viewing when adding or editing the tag"
shortName="CPTAC"

/>

<Tag

name="Curation:Micronutrients"
displayName="Community: Micronutrients"
useRevision="true"
description="Pathways with this tag are relevant for the Micronutrients portal. This tag applies to the revision you are viewing when adding or editing the tag"
shortName="Micronutrients"

/>

<Tag

name="Curation:Homology_Converted"
displayName="Homology Converted"
useRevision="true"
description="Pathways with this tag have been inferred from another species with the HomologyMapper."
shortName="Homology Converted"

/>

<Tag

name="Curation:Wikipedia"
displayName="Featured in Wikipedia"
description="Use this tag to indicate pathways that have been integrated into Wikipedia articles as interactive maps"
useRevision="true"
shortName="Wikipedia"

/>

<Tag

 name="Curation:ProposedDeletion"
 displayName="Request deletion"
 description="Use this tag to notify the author that this pathway is proposed for deletion. Please explain why the pathway should be deleted in the tag text."
 newEditHighlight="2 weeks"
 highlightAction="delete"
 icon="Deletion.png"
 bureaucrat="1"

/>

</TagDefinitions>