Valine biosynthesis (Saccharomyces cerevisiae)

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Description

The pathway of valine biosynthesis is a four-step pathway that shares all of its steps with the parallel pathway of isoleucine biosynthesis (https://www.wikipathways.org/pathways/WP250.html). These entwined pathways are part of the superpathway of branched chain amino acid biosynthesis, that generates not only isoleucine and valine, but also leucine.

As a consequence of having several of its component enzymes involved in the synthesis of three different amino acids, the pathway of isoleucine biosynthesis is subject to regulation by all three amino acids. The first step in the pathway is primarily inhibited by valine, along with inhibition by isoleucine and leucine. The potential disruption this might cause to the parallel isoleucine biosynthesis pathway step using the same enzymes is resolved by upregulation of an earlier step that is unique to isoleucine biosynthesis, as explained in the L-isoleucine biosynthesis I (from threonine) summary. In this way, valine biosynthesis can be regulated independently of isoleucine biosynthesis, despite all four valine biosynthesis enzymes also participating in isoleucine biosynthesis.

SOURCE: SGD pathways, http://pathway.yeastgenome.org/server.html

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Ontology Terms

 

Bibliography

  1. Holmberg S, Petersen JG; ''Regulation of isoleucine-valine biosynthesis in Saccharomyces cerevisiae.''; Curr Genet, 1988 PubMed Europe PMC Scholia
  2. ''L-valine biosynthesis''; YeastPathways,

History

View all...
CompareRevisionActionTimeUserComment
135548view22:17, 23 September 2024Khanspersupdated reference
135547view22:15, 23 September 2024KhanspersModified description
135546view22:13, 23 September 2024KhanspersOntology Term : 'classic metabolic pathway' added !
135545view22:12, 23 September 2024Khanspersupdate node names to official, added ILV5, economize layout
118865view09:28, 3 June 2021Mkutmonupdate description
118864view09:25, 3 June 2021Mkutmonfixed unconnected lines
117361view11:56, 20 May 2021EweitzModified title
107012view13:46, 17 September 2019MaintBotHMDB identifier normalization
89647view15:58, 23 September 2016EgonwReplace the CAS number of the salt with that of just the metabolite.
78390view10:25, 7 January 2015MaintBotadded missing graphIds
74144view10:57, 1 April 2014EgonwReplaced InChIs and an InChIKey with more traditional identifiers.
73386view16:36, 25 January 2014EgonwAdded metabolite identifiers and cat indications.
69640view20:37, 8 July 2013MaintBotUpdated to 2013 gpml schema
67741view11:57, 26 June 2013DdiglesOntology Term : 'valine biosynthetic pathway' added !
53534view19:33, 8 November 2012EgonwMarked two further metabolites as such.
53533view19:30, 8 November 2012EgonwMarked InChIKeys as such.
53532view19:29, 8 November 2012EgonwConverted general nodes into Metabolite DataNodes.
41878view04:52, 2 March 2011MaintBotRemoved redundant pathway information and comments
36650view22:39, 9 April 2010MaintBotDescription and bibliography added from SGD
20673view11:29, 14 November 2008MaintBot[[Pathway:Saccharomyces cerevisiae:Valine Biosynthesis]] moved to [[Pathway:WP2]]: Moved to stable identifier
12897view08:07, 17 May 2008MaintBotautomated metabolite conversion
9005view14:14, 7 January 2008MaintBotAdded to category $category
9003view14:14, 7 January 2008M.BraymerUploaded new pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
(R)-2,3-dihydroxy-3-methylbutanoateMetaboliteCHEBI:49072 (ChEBI)
2 pyruvateMetaboliteCHEBI:15361 (ChEBI)
2-aceto-lactateMetabolite13999770 (PubChem-compound)
2-oxoglutarateMetaboliteCHEBI:16810 (ChEBI)
3-methyl-2-oxobutanoateMetaboliteCHEBI:11851 (ChEBI)
BAT1GeneProductS000001251 (SGD)
BAT2GeneProductS000003909 (SGD)
CO2MetaboliteCHEBI:16526 (ChEBI)
H+MetaboliteCHEBI:15378 (ChEBI)
H2OMetaboliteCHEBI:15377 (ChEBI)
ILV2GeneProductS000004714 (SGD)
ILV3GeneProductS000003777 (SGD)
ILV5GeneProductYLR355C (Ensembl)
ILV6GeneProductS000000515 (SGD)
L-glutamateMetabolite56-86-0 (CAS)
L-valineMetaboliteCHEBI:16414 (ChEBI)
NADPHMetabolite53-57-6 (CAS)
NADPMetaboliteHMDB0000217 (HMDB)

Annotated Interactions

No annotated interactions

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