Flowering time pathway (Arabidopsis thaliana)

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NF-YA6NF-YA5NF-YA10NF-YA9NF-YA8NF-YA1NF-YA3NF-YA2NF-YA7NF-YA443, 1313426, 1363, 10011, 42, 62, 156, 17031, 1731864Autonomous PathwayVPR COMPLEXFLOWERINGPfrSDGENE BASKETCircadian clockNF-YA subunitGo ahead! Help us move these interactors into the pathwayVV11971, 111Affects mRNA stability AgeCo-regulationParalogsEvening complexActivation; Up-regulationPAF1 complexBindingTo be moved into PathwaySWR1 complexSWI/SNF ATPaseShort DayDELLATranscript to ProteinKEYVernalizationInhibition; Down-regulationSBP group IIdComplex1501689153SPL15AtSWC2VIL3/VEL2MFTSPA4COL1/BBX2SRR1AGL72MAF4NF-YB2CDF2NF-YB11ABI5GID1CPHYBmiRNA172GA20ox2FDSEFCIB1DDF1SPA2PHYEFULPIL6MAF3AGL19LFYATSWI3BNF-YC9AGL14/XAL2LUXCK2alphaCGRF1ELF7/VIP2NF-YB1FWACK2beta2VIP3NF-YC7RGL2FPF1NF-YC10DCAF1ATSWI3CFRISIZ1GAIVIP4FYPP3TFL1COL9/BBX7TEM2FDPPRR9LDL1/SWP1SPA1NF-YB3FLCSRT2ESD4NF-YC8PHP/CDC73ELF8/VIP6VRN1ELF3FTATCPIF7DNFSYP22EARLI1TFL2/LHP1CDF5DDF2SVPBBX19TFL2GID1BPCFS4MAF2SEF/AtSWC6CK2beta1ATH1BRMAP1AGL74GIPIF3GA4HOS1FKF1CALCK2alphaANF-YB13PRR7PHYCWNK8RGL1TOE1ATMYB33TOC1/PRR1LDL2AtRING1ADDB1APAF2GNLVEL3NF-YC13PAF1NDPK2HUA2HFR1GRF5BFTSPL9SLY1SDG9/SUVH5/CZSTPS1CSD2EBSAGL24SDG26PEPCRY1COL4/BBX5PHYAGNCFLXNF-YC1NF-YB10ABF1SNESPL3BSH/CHE1COL5/BBX6NF-YB6FRL1GRF9LWD2ELF5TICRGL3miRNA156PIF6COL3/BBX4CK2beta3PKDM7DZTLCOP1SMZARP6EDF3EDM2GRF8SPL10AGL71SOC1HRB1FES1NF-YB9SPL4SUF4ATX1/SDG27TEM1NF-YC5NF-YC12CDF3MAF1/FLM/AGL27ELF4CUL4CDF1GRF6COL2/BBX3ELF9LWD1PKDM7CNF-YC3SINAT5FWAAGL6AP2NF-YB4NF-YB8AGL17NF-YC6ESP4EMF1GBF4ATSWI3ACHEABH1STO/BBX24GID1APIE1PIN1ATFUS9PRR5CCA1AGL16NF-YB12Abscisic Acid(ABA)AGL42/FYFLHYABF2NF-YB7PHYDRAV1GRF4PFT1LHCB3ARP6ABF3CK2beta4CK2alphaBCRY2SPA3RGA1NF-YC11RBX1NF-YC4RFI2TSFSPL5COP1FRL2ATXR7/SDG25AGL18CytokininNF-YB5AtBMI1APIE1GA20ox1ATbZIP15DDB1BEFSMAF5PIF4SPYJMJ13JMJ14GRF7GRF3GRF2NF-YC2LKP2DET1CO/BBX1CK2alphaCpEIP6/BBX32FIO1DDB2119, 12011993111271711191199221, 933093936679119119597, 53, 1671506311924111, 119119105, 1164510113711911957, 165122119160119119, 1325466, 83287014541, 175119368032, 9613621, 9317, 1371274, 33, 12344118, 15811911911911911946119119128118174150101197782, 103, 13313711911741, 17582, 1256313, 26, 30, 1571438, 79, 83, 154142, 14814591, 13925119251034011997, 15911998771191191199311930119, 17311969, 87135631925999, 1059722, 56, 58119105, 11693145677795, 1196486, 119, 16415051, 1265, 12949778063, 939311911990, 118, 15812720, 107, 16823939386, 1301191389, 70, 15415152, 1632, 1641197, 53, 16741, 175103, 16211986119149119461196091226516979731, 35, 10611915011911911938, 54, 111, 11936, 37, 166119931197711976164103, 1196, 1366111959, 9411912466, 8366, 836078, 11293, 14482, 103, 133, 1631194511910217611911914752, 108, 134616111911311011948, 69619FACFTFD119GRF3WER50Altered expressionGibberellinBrassinosteroidVernalization Photoperiod ARP4F3L24.6172161AGAL2104SFR6155SAL1WNK5104106, 152ELF4-L1ELF4-L2119119ELF4-L4ELF4-L3119119FRI-LP1119DOF1.5RAVL3119bZIP13119119RAVL2119COR15aCRP114WNK172109PRR3121RVE868, 74, 141U2AF35A55MBD914, 39ELF684, 85BES1REF68584, 85ICU2FAS281177NUC88SUS4?8888Sugar MetabolismESD7177B3H7I2119EELTOE3119119TOE2119EEC119AtDOF1.3119AtDOF2.3119NF-YB subunitNF-YC subunitSNZ30Affects protein stability Vernalization-Specific PHD-PRC2 Complex 47EMF237, 111, 146CLF/SDG1MSI1FIE1/FIS3MEA/SDG5/FIS1VRN2FIE2/FIS2SWN7, 71VIN3VEL1/VIL229, 73, 75VIL1/VRN5PRC2151ambient temperature48, 140SKB154, 80, 115LDFY119FLD119FPA119119FCA119FVE/MSI4119FLK119


Description

Arabidopsis thaliana is an annual facultative long-day plant. The correct timing of flowering is a key adaptive trait in all plants to ensure reproduction. A complex genetic network comprising numerous environmentally and endogenously controlled factors control the transition from vegetative to reproductive growth. Important pathways responding to environmental cues are the vernalization and the photoperiod pathways whereas the autonomous, gibberellin, age, sugar metabolism, and circadian clock pathways react to endogenous signals. Several floral integrator genes to which the various pathways lead govern the transition from a vegetative to a floral meristem.

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  95. Balasubramanian S, Sureshkumar S, Agrawal M, Michael TP, Wessinger C, Maloof JN, Clark R, Warthmann N, Chory J, Weigel D; ''The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana.''; Nat Genet, 2006 PubMed Europe PMC Scholia
  96. Tamada Y, Yun JY, Woo SC, Amasino RM; ''ARABIDOPSIS TRITHORAX-RELATED7 is required for methylation of lysine 4 of histone H3 and for transcriptional activation of FLOWERING LOCUS C.''; Plant Cell, 2009 PubMed Europe PMC Scholia
  97. Ariizumi T, Lawrence PK, Steber CM; ''The role of two f-box proteins, SLEEPY1 and SNEEZY, in Arabidopsis gibberellin signaling.''; Plant Physiol, 2011 PubMed Europe PMC Scholia
  98. Tseng TS, Salomé PA, McClung CR, Olszewski NE; ''SPINDLY and GIGANTEA interact and act in Arabidopsis thaliana pathways involved in light responses, flowering, and rhythms in cotyledon movements.''; Plant Cell, 2004 PubMed Europe PMC Scholia
  99. Hu YX, Wang YX, Liu XF, Li JY; ''Arabidopsis RAV1 is down-regulated by brassinosteroid and may act as a negative regulator during plant development.''; Cell Res, 2004 PubMed Europe PMC Scholia
  100. Wu JF, Wang Y, Wu SH; ''Two new clock proteins, LWD1 and LWD2, regulate Arabidopsis photoperiodic flowering.''; Plant Physiol, 2008 PubMed Europe PMC Scholia
  101. Brock MT, Maloof JN, Weinig C; ''Genes underlying quantitative variation in ecologically important traits: PIF4 (phytochrome interacting factor 4) is associated with variation in internode length, flowering time, and fruit set in Arabidopsis thaliana.''; Mol Ecol, 2010 PubMed Europe PMC Scholia
  102. Chen H, Shen Y, Tang X, Yu L, Wang J, Guo L, Zhang Y, Zhang H, Feng S, Strickland E, Zheng N, Deng XW; ''Arabidopsis CULLIN4 Forms an E3 Ubiquitin Ligase with RBX1 and the CDD Complex in Mediating Light Control of Development.''; Plant Cell, 2006 PubMed Europe PMC Scholia
  103. Nakamichi N, Kita M, Niinuma K, Ito S, Yamashino T, Mizoguchi T, Mizuno T; ''Arabidopsis clock-associated pseudo-response regulators PRR9, PRR7 and PRR5 coordinately and positively regulate flowering time through the canonical CONSTANS-dependent photoperiodic pathway.''; Plant Cell Physiol, 2007 PubMed Europe PMC Scholia
  104. Kim BH, von Arnim AG; ''FIERY1 regulates light-mediated repression of cell elongation and flowering time via its 3'(2'),5'-bisphosphate nucleotidase activity.''; Plant J, 2009 PubMed Europe PMC Scholia
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  127. Bernhardt A, Lechner E, Hano P, Schade V, Dieterle M, Anders M, Dubin MJ, Benvenuto G, Bowler C, Genschik P, Hellmann H; ''CUL4 associates with DDB1 and DET1 and its downregulation affects diverse aspects of development in Arabidopsis thaliana.''; Plant J, 2006 PubMed Europe PMC Scholia
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  132. Taoka K, Ohki I, Tsuji H, Furuita K, Hayashi K, Yanase T, Yamaguchi M, Nakashima C, Purwestri YA, Tamaki S, Ogaki Y, Shimada C, Nakagawa A, Kojima C, Shimamoto K; ''14-3-3 proteins act as intracellular receptors for rice Hd3a florigen.''; Nature, 2011 PubMed Europe PMC Scholia
  133. Ito S, Nakamichi N, Nakamura Y, Niwa Y, Kato T, Murakami M, Kita M, Mizoguchi T, Niinuma K, Yamashino T, Mizuno T; ''Genetic linkages between circadian clock-associated components and phytochrome-dependent red light signal transduction in Arabidopsis thaliana.''; Plant Cell Physiol, 2007 PubMed Europe PMC Scholia
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  135. Hazen SP, Schultz TF, Pruneda-Paz JL, Borevitz JO, Ecker JR, Kay SA; ''LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms.''; Proc Natl Acad Sci U S A, 2005 PubMed Europe PMC Scholia
  136. Fornara F, Panigrahi KC, Gissot L, Sauerbrunn N, Rühl M, Jarillo JA, Coupland G; ''Arabidopsis DOF transcription factors act redundantly to reduce CONSTANS expression and are essential for a photoperiodic flowering response.''; Dev Cell, 2009 PubMed Europe PMC Scholia
  137. Rieu I, Ruiz-Rivero O, Fernandez-Garcia N, Griffiths J, Powers SJ, Gong F, Linhartova T, Eriksson S, Nilsson O, Thomas SG, Phillips AL, Hedden P; ''The gibberellin biosynthetic genes AtGA20ox1 and AtGA20ox2 act, partially redundantly, to promote growth and development throughout the Arabidopsis life cycle.''; Plant J, 2008 PubMed Europe PMC Scholia
  138. Levy YY, Mesnage S, Mylne JS, Gendall AR, Dean C; ''Multiple roles of Arabidopsis VRN1 in vernalization and flowering time control.''; Science, 2002 PubMed Europe PMC Scholia
  139. Khanna R, Kronmiller B, Maszle DR, Coupland G, Holm M, Mizuno T, Wu SH; ''The Arabidopsis B-box zinc finger family.''; Plant Cell, 2009 PubMed Europe PMC Scholia
  140. Blázquez MA, Ahn JH, Weigel D; ''A thermosensory pathway controlling flowering time in Arabidopsis thaliana.''; Nat Genet, 2003 PubMed Europe PMC Scholia
  141. Farinas B, Mas P; ''Functional implication of the MYB transcription factor RVE8/LCL5 in the circadian control of histone acetylation.''; Plant J, 2011 PubMed Europe PMC Scholia
  142. Tsuchiya T, Eulgem T; ''The Arabidopsis defense component EDM2 affects the floral transition in an FLC-dependent manner.''; Plant J, 2010 PubMed Europe PMC Scholia
  143. Ebine K, Uemura T, Nakano A, Ueda T; ''Flowering time modulation by a vacuolar SNARE via FLOWERING LOCUS C in Arabidopsis thaliana.''; PLoS One, 2012 PubMed Europe PMC Scholia
  144. Piñeiro M, Gómez-Mena C, Schaffer R, Martínez-Zapater JM, Coupland G; ''EARLY BOLTING IN SHORT DAYS is related to chromatin remodeling factors and regulates flowering in Arabidopsis by repressing FT.''; Plant Cell, 2003 PubMed Europe PMC Scholia
  145. Yang W, Jiang D, Jiang J, He Y; ''A plant-specific histone H3 lysine 4 demethylase represses the floral transition in Arabidopsis.''; Plant J, 2010 PubMed Europe PMC Scholia
  146. Yoshida N, Yanai Y, Chen L, Kato Y, Hiratsuka J, Miwa T, Sung ZR, Takahashi S; ''EMBRYONIC FLOWER2, a novel polycomb group protein homolog, mediates shoot development and flowering in Arabidopsis.''; Plant Cell, 2001 PubMed Europe PMC Scholia
  147. Bezerra IC, Michaels SD, Schomburg FM, Amasino RM; ''Lesions in the mRNA cap-binding gene ABA HYPERSENSITIVE 1 suppress FRIGIDA-mediated delayed flowering in Arabidopsis.''; Plant J, 2004 PubMed Europe PMC Scholia
  148. Tsuchiya T, Eulgem T; ''Co-option of EDM2 to distinct regulatory modules in Arabidopsis thaliana development.''; BMC Plant Biol, 2010 PubMed Europe PMC Scholia
  149. Xu L, Zhao Z, Dong A, Soubigou-Taconnat L, Renou JP, Steinmetz A, Shen WH; ''Di- and tri- but not monomethylation on histone H3 lysine 36 marks active transcription of genes involved in flowering time regulation and other processes in Arabidopsis thaliana.''; Mol Cell Biol, 2008 PubMed Europe PMC Scholia
  150. Choi K, Park C, Lee J, Oh M, Noh B, Lee I; ''Arabidopsis homologs of components of the SWR1 complex regulate flowering and plant development.''; Development, 2007 PubMed Europe PMC Scholia
  151. Greb T, Mylne JS, Crevillen P, Geraldo N, An H, Gendall AR, Dean C; ''The PHD finger protein VRN5 functions in the epigenetic silencing of Arabidopsis FLC.''; Curr Biol, 2007 PubMed Europe PMC Scholia
  152. Filo J, Wu A, Eliason E, Richardson T, Thines BC, Harmon FG; ''Gibberellin driven growth in elf3 mutants requires PIF4 and PIF5.''; Plant Signal Behav, 2015 PubMed Europe PMC Scholia
  153. Guo AY, Zhu QH, Gu X, Ge S, Yang J, Luo J; ''Genome-wide identification and evolutionary analysis of the plant specific SBP-box transcription factor family.''; Gene, 2008 PubMed Europe PMC Scholia
  154. Kang MY, Yoo SC, Kwon HY, Lee BD, Cho JN, Noh YS, Paek NC; ''Negative regulatory roles of DE-ETIOLATED1 in flowering time in Arabidopsis.''; Sci Rep, 2015 PubMed Europe PMC Scholia
  155. Knight H, Thomson AJ, McWatters HG; ''Sensitive to freezing6 integrates cellular and environmental inputs to the plant circadian clock.''; Plant Physiol, 2008 PubMed Europe PMC Scholia
  156. Sugano S, Andronis C, Green RM, Wang ZY, Tobin EM; ''Protein kinase CK2 interacts with and phosphorylates the Arabidopsis circadian clock-associated 1 protein.''; Proc Natl Acad Sci U S A, 1998 PubMed Europe PMC Scholia
  157. Kim DH, Kang JG, Yang SS, Chung KS, Song PS, Park CM; ''A phytochrome-associated protein phosphatase 2A modulates light signals in flowering time control in Arabidopsis.''; Plant Cell, 2002 PubMed Europe PMC Scholia
  158. Yu X, Michaels SD; ''The Arabidopsis Paf1c complex component CDC73 participates in the modification of FLOWERING LOCUS C chromatin.''; Plant Physiol, 2010 PubMed Europe PMC Scholia
  159. McGinnis KM, Thomas SG, Soule JD, Strader LC, Zale JM, Sun TP, Steber CM; ''The Arabidopsis SLEEPY1 gene encodes a putative F-box subunit of an SCF E3 ubiquitin ligase.''; Plant Cell, 2003 PubMed Europe PMC Scholia
  160. Herr AJ, Monlàr A, Jones A, Baulcombe DC; ''Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis.''; Proc Natl Acad Sci U S A, 2006 PubMed Europe PMC Scholia
  161. Pouteau S, Carré I, Gaudin V, Ferret V, Lefebvre D, Wilson M; ''Diversification of photoperiodic response patterns in a collection of early-flowering mutants of Arabidopsis.''; Plant Physiol, 2008 PubMed Europe PMC Scholia
  162. Wang L, Fujiwara S, Somers DE; ''PRR5 regulates phosphorylation, nuclear import and subnuclear localization of TOC1 in the Arabidopsis circadian clock.''; EMBO J, 2010 PubMed Europe PMC Scholia
  163. Lu SX, Webb CJ, Knowles SM, Kim SH, Wang Z, Tobin EM; ''CCA1 and ELF3 Interact in the control of hypocotyl length and flowering time in Arabidopsis.''; Plant Physiol, 2012 PubMed Europe PMC Scholia
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  165. Melzer S, Kampmann G, Chandler J, Apel K; ''FPF1 modulates the competence to flowering in Arabidopsis.''; Plant J, 1999 PubMed Europe PMC Scholia
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  169. Mayfield JD, Folta KM, Paul AL, Ferl RJ; ''The 14-3-3 Proteins mu and upsilon influence transition to flowering and early phytochrome response.''; Plant Physiol, 2007 PubMed Europe PMC Scholia
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History

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CompareRevisionActionTimeUserComment
124574view01:01, 12 November 2022KhanspersModified title
124573view21:34, 11 November 2022KhanspersModified title
124533view15:46, 5 November 2022CernModified title
119567view10:21, 16 July 2021FinterlyAdded DOI to PublicationXref
118345view13:27, 27 May 2021Mkutmonupdate metadata
118342view13:25, 27 May 2021Mkutmonfix publication refs
117235view09:47, 19 May 2021EweitzModified title
109365view14:12, 16 March 2020L DupuisConverted interactions to graphical lines in legend
102412view08:34, 23 December 2018EgonwRemoved a link which was used as PubMed ID.
102083view19:42, 28 November 2018EgonwRemoved whitespace in PubMed identifiers.
87502view01:47, 25 July 2016AlexanderPicoOntology Term : 'signaling pathway' added !
87353view09:27, 22 July 2016MaintBotadded missing graphids
86924view12:08, 15 July 2016Mkutmonfixed publication references
85987view19:13, 22 June 2016Khanspersremove comment with weird format
85827view15:07, 16 June 2016Mbluemelupdated literature, added SYP22, removed TT16, CAM4, AGL79, ABF4 (no known function in flowering time regulation)
85634view13:47, 4 June 2016EgonwReplaced a mim-conversion with mim-stimulation.
85623view13:32, 3 June 2016Mbluemelupdated circadian clock pathway, updated references
85570view15:36, 1 June 2016Mbluemelintegrated AtSWC2, SWR1 complex, updated literature
83022view16:23, 17 November 2015Mbluemelintegrated ambient temperature pathway, updated literature
82930view15:10, 13 November 2015Mbluemelintegrated new genes BBX19, BBX32, updated literature
82844view14:35, 6 November 2015Mbluemelupdated and corrected gibberellin pathway, updated literature, added genes: SNE, GA20ox1,2 SIZ1, GNC, GNL corrected position of ABI5 as positive regulator of FLC, removed GA1 (no role in flowering time control)
82834view16:52, 5 November 2015Mbluemelupdated literature and connections for SMZ,SNZ,TEM, added SWI/SNF ATPase genes, moved Gibberellin pathway, added RGL3, AGL42/FYF, AGL71, AGL72
82639view13:25, 16 October 2015Mbluemeladded AtBMI1a, AtRING1a, corrected PRC2 complex, removed duplicate of LHP1/TFL2, updated literature
82612view09:30, 14 October 2015Mbluemelrenamed CK2 genes following Salinas et al. 2006, updated literature, updated connections and literature for AGL6 and AGL14, deleted AGL21, SEP1, SEP3, AREB3, DPBF2 because no proven role in flowering time control
82207view16:33, 14 September 2015Mbluemeladded age pathway, added SPL10, integrated TOE2, updated literature, updated connections
81135view13:33, 27 July 2015MbluemelModified description
78910view17:21, 12 February 2015Mbluemel
78898view14:57, 11 February 2015Mbluemelinserted TPS1 as regulator of miRNA156 and SPL3-5 according to Wahl et al. 2013
78387view10:22, 7 January 2015MaintBotadded missing graphIds
74448view05:15, 21 April 2014EgonwFixed PubMed IDs.
74065view11:00, 27 March 2014AnweshaImproved Layout
70199view04:46, 13 July 2013MaintBotupdated to 2013 schema
68755view14:40, 7 July 2013EgonwFixed the data source to Wikipedia.
58393view21:45, 12 February 2013MaintBotModified categories
51896view22:54, 24 September 2012MamathaNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
?
ABF1GeneProductAT1G49720 (TAIR) Related to flowering; no pathway found.
ABF2GeneProductAT1G45249 (TAIR) Related to flowering; no pathway found.
ABF3GeneProductAT4G34000 (TAIR) Related to flowering; no pathway found.
ABH1GeneProductAT2G13540 (TAIR)
ABI5GeneProductAT2G36270 (TAIR)
AGAL2GeneProductAT5G08370 (TAIR) MA Related to flowering; no pathway found.
AGL14/ XAL2GeneProductAT4G11880 (TAIR) MADS-box gene preferentially expressed in the root
AGL16GeneProductAT3G57230 (TAIR)
AGL17GeneProductAT2G22630 (TAIR)
AGL18GeneProductAT3G57390 (TAIR)
AGL19GeneProductAT4G22950 (TAIR)
AGL24GeneProductAT4G24540 (TAIR)
AGL42/ FYFGeneProductAT5G62165 (TAIR) paralog of SOC1
AGL6GeneProductAT2G45650 (TAIR) AGL6 acts as a floral promoter with a dual role; inhibition of FLC, promotion of FT expression
AGL71GeneProductAT5G51870 (TAIR)
AGL72GeneProductAT5G51860 (TAIR)
AGL74GeneProductAT1G48150 (TAIR)
AP1GeneProductAT1G69120 (TAIR)
AP2GeneProductAT4G36920 (TAIR)
ARP4GeneProductAT1G18450 (TAIR) Related to flowering; no pathway found.
ARP6GeneProductAT3G33520 (TAIR) This denotes the SWR1 complex consisting of PIE1,SEF1 and ARP6
ATCGeneProductAT2G27550 (TAIR)
ATH1GeneProductAT4G32980 (TAIR)
ATMYB33GeneProductAT5G06100 (TAIR)
ATSWI3AGeneProductAT2G47620 (TAIR)
ATSWI3BGeneProductAT2G33610 (TAIR)
ATSWI3CGeneProductAT1G21700 (TAIR)
ATX1/ SDG27GeneProductAT2G31650 (TAIR)
ATXR7/ SDG25GeneProductAT5G42400 (TAIR)
ATbZIP15GeneProductAT5G42910 (TAIR) Related to flowering; no pathway found.
Abscisic Acid (ABA)Metabolite4444418 (Chemspider)
AtBMI1AGeneProductAT2G30580 (TAIR)
AtDOF1.3 GeneProductAT1G26790 (TAIR)
AtDOF2.3 GeneProductAT2G34140 (TAIR) DL4430C
AtRING1AGeneProductAT5G10380 (TAIR)
AtSWC2GeneProductAT2G36740 (TAIR)
B3H7I2 GeneProductAT4G16810 (TAIR) DL4430C
BBX19GeneProductAT4G38960 (TAIR)
BES1GeneProductAT1G19350 (TAIR) BES1 recruits other transcriptional regulators such as ELF6 and REF6 to regulate target gene expression and coordinate BR responses with other developmental processes such as control of flowering time
BFTGeneProductAT5G62040 (TAIR)
BRMGeneProductAT2G46020 (TAIR) Partially redundant with autonomous pathway; acts through photoperiod pathway to suppress the floral promoters CO, FT and SOC1 and the floral repressor FLC.
BSH/ CHE1GeneProductAT3G17590 (TAIR)
  • conserved subunit of plant SWI/SNF complexes.
  • homologue of yeast SNF5
CALGeneProductAT1G26310 (TAIR)
CCA1GeneProductAT2G46830 (TAIR)
CDF1GeneProductAT5G62430 (TAIR)
CDF2GeneProductAT5G39660 (TAIR)
CDF3GeneProductAT3G47500 (TAIR)
CDF5GeneProductAt1g69570 (TAIR)
CHEGeneProductAT5G08330 (TAIR)
CIB1GeneProductAT4G34530 (TAIR)
CK2alphaAGeneProductAT5G67380 (TAIR)
CK2alphaBGeneProductAT3G50000 (TAIR)
CK2alphaCGeneProductAT2G23080 (TAIR) Symbol assigned by Mamatha Hanumappa, 16-Nov-2011
CK2alphaCpGeneProductAT2G23070 (TAIR) Symbol assigned by Mamatha Hanumappa, 16-Nov-2011
CK2beta1GeneProductAT5G47080 (TAIR)
CK2beta2GeneProductAT4G17640 (TAIR)
CK2beta3GeneProductAT3G60250 (TAIR)
CK2beta4GeneProductAT2G44680 (TAIR)
CLF/ SDG1GeneProductAT2G23380 (TAIR)
CO/ BBX1GeneProductAT5G15840 (TAIR)
COL1/BBX2GeneProductAT5G15850 (TAIR)
COL2/BBX3GeneProductAT3G02380 (TAIR)
COL3/ BBX4GeneProductAT2G24790 (TAIR)
COL4/BBX5GeneProductAT5G24930 (TAIR)
COL5/BBX6GeneProductAT5G57660 (TAIR)
COL9/ BBX7GeneProductAT3G07650 (TAIR)
COP1GeneProductAT2G32950 (TAIR)
COR15a GeneProductAT2G42540 (TAIR)
CRPGeneProductAT4G00450 (TAIR) Related to flowering; no pathway found.
CRY1GeneProductAT4G08920 (TAIR)
CRY2GeneProductAT1G04400 (TAIR)
CSD2GeneProductAT2G28190 (TAIR)
CUL4GeneProductAT5G46210 (TAIR)
CytokininMetabolite365386 (Chemspider)
DCAF1GeneProductAT4G31160 (TAIR)
DDB1AGeneProductAT4G05420 (TAIR)
DDB1BGeneProductAT4G21100 (TAIR)
DDB2GeneProductAT5G58760 (TAIR)
DDF1GeneProductAT1G12610 (TAIR)
DDF2GeneProductAT1G63030 (TAIR)
DET1GeneProductAT4G10180 (TAIR)
DNFGeneProductAT3G19140 (TAIR)
DOF1.5 GeneProductAT1G29160 (TAIR)
EARLI1GeneProductAT4G12480 (TAIR) bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein; Represses FLC, activates SOC1 and FT.
EBSGeneProductAT4G22140 (TAIR)
EDF3GeneProductAT3G25730 (TAIR) Related to flowering; no pathway found.
EDM2GeneProductAT5G55390 (TAIR)
EEC GeneProductAT3G21320 (TAIR) DL4430C
EEL GeneProductAT2G41070 (TAIR) DL4430C
EFSGeneProductAT1G77300 (TAIR)
EIP6/ BBX32GeneProductAT3G21150 (TAIR)
ELF3GeneProductAT2G25930 (TAIR)
ELF4-L1 GeneProductAT2G29950 (TAIR)
ELF4-L2 GeneProductAT1G72630 (TAIR)
ELF4-L3 GeneProductAT2G06255 (TAIR)
ELF4-L4 GeneProductAT1G17455 (TAIR)
ELF4GeneProductAT2G40080 (TAIR)
ELF5GeneProductAT5G62640 (TAIR)
ELF6GeneProductAT5G04240 (TAIR) ELF6 does not function in the same pathway as the FLC-dependent pathway but rather functions as an upstream repressor of the photoperiodic flowering pathway (PMID 15377760). BES1 recruits ELF6 and REF6, among others, to coordinate BR responses with other developmental processes such as control of flowering time
ELF7/VIP2GeneProductAT1G79730 (TAIR)
ELF8/VIP6GeneProductAT2G06210 (TAIR)
ELF9GeneProductAT5G16260 (TAIR)
EMF1GeneProductAT5G11530 (TAIR) EMF1 functions as a Polycomb Group protein
EMF2GeneProductAT5G51230 (TAIR)
ESD4GeneProductAT4G15880 (TAIR)
ESD7GeneProductAT1G08260 (TAIR)
ESP4GeneProductAT5G01400 (TAIR)
  • Forms a complex with FY
  • RNA processing component
  • Type your comment here
F3L24.6GeneProductAT3G09190 (TAIR) Regulates flowering time in Ws ecotype. Putative Lectin.
FAS2GeneProductAT5G64630 (TAIR) FAS2 may function downstream of ESD7 FAS2 and ICU2 interact with ESD7 in the control of flowering time
FCAGeneProductAT4G16280 (TAIR)
FDGeneProductAT4G35900 (TAIR)
  • Rice ortholog FD1 binds to promoter of MADS15, the arabidopsis AP1 ortholog, to activate transcription.
FDPGeneProductAT2G17770 (TAIR)
FES1GeneProductAT2G33835 (TAIR)
FIE1/ FIS3GeneProductAT3G20740 (TAIR)
FIE2/ FIS2GeneProductAT2G35670 (TAIR) Similar to EMF2
FIO1GeneProductAT2G21070 (TAIR)
FKF1GeneProductAT1G68050 (TAIR)
FLCGeneProductAT5G10140 (TAIR)
FLDGeneProductAT3G10390 (TAIR)
FLKGeneProductAT3G04610 (TAIR)
FLXGeneProductAT2G30120 (TAIR)
FPAGeneProductAT2G43410 (TAIR)
FPF1GeneProductAT5G24860 (TAIR)
FRI-LP1 GeneProductAT5G27220 (TAIR)
  • A_TM021B04.7
  • FRI-LP1 assigned by Mamatha Hanumappa, 18-Nov-2011
FRIGeneProductAT4G00650 (TAIR)
FRL1GeneProductAT5G16320 (TAIR)
FRL2GeneProductAT1G31814 (TAIR)
FTGeneProductAT1G65480 (TAIR)
  • Ortholog of rice florigen Hd3a
FULGeneProductAT5G60910 (TAIR)
FUS9GeneProductAT3G13550 (TAIR)
FVE/ MSI4GeneProductAT2G19520 (TAIR)
FWAGeneProductAT4G25530 (TAIR)
FYGeneProductAT5G13480 (TAIR)
FYPP3GeneProductAT1G50370 (TAIR)
GA20ox1GeneProductAT4G25420 (TAIR)
GA20ox2GeneProductAT5G51810 (TAIR)
GA4Metabolite10222155 (Chemspider) GA1 catalyzes conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) in gibberellin biosynthesis.
GAIGeneProductAT1G14920 (TAIR)
GBF4GeneProductAT1G03970 (TAIR) Related to flowering; no pathway found.
GIGeneProductAT1G22770 (TAIR)
GID1A GeneProductAT3G05120 (TAIR) AFFINITY TO GA4; ASSOCIATED WITH GID1B AND C WHICH ARE FUNCTIONALLY REDUNDANT
GID1BGeneProductAT3G63010 (TAIR) ASSOCIATED WITH GID1A AND C WHICH ARE FUNCTIONALLY REDUNDANT
GID1CGeneProductAT5G27320 (TAIR) FUNCTIONALLY REDUNDANT TO GID1A AND B
GNCGeneProductAT5G56860 (TAIR)
GNLGeneProductAT4G26150 (TAIR)
GRF1GeneProductAT4G09000 (TAIR)
GRF2GeneProductAT1G78300 (TAIR)
GRF3GeneProductAT5G38480 (TAIR)
  • Rice ortholog GF14c bridges Hd3a and FD1 in rice.
GRF4GeneProductAT1G35160 (TAIR)
GRF5GeneProductAT5G16050 (TAIR)
GRF6GeneProductAT5G10450 (TAIR)
GRF7GeneProductAT3G02520 (TAIR)
GRF8GeneProductAT5G65430 (TAIR)
GRF9GeneProductAT2G42590 (TAIR)
HFR1GeneProductAT1G02340 (TAIR)
HOS1GeneProductAT2G39810 (TAIR)
HRB1GeneProductAT5G49230 (TAIR) HRB1 may regulate FT expression and flowering downstream of cry2 under LD and may modulate phyB light quality flowering pathway
HUA2GeneProductAT5G23150 (TAIR)
ICU2GeneProductAT5G67100 (TAIR) ICU2 Gene Encodes the Catalytic Subunit of DNA Polymerase α
JMJ13GeneProductAT5G46910 (TAIR) Based on Rice. Assigned based on PMID:18765808 by Mamatha Hanumappa, 18-Nov-2011
JMJ14GeneProductAT4G20400 (TAIR) PKDM7B
LDGeneProductAT4G02560 (TAIR)
LDL1/SWP1GeneProductAT1G62830 (TAIR) histone deacetylase complex component
LDL2GeneProductAT3G13682 (TAIR)
LFYGeneProductAT5G61850 (TAIR)
LHCB3GeneProductAT5G54270 (TAIR) LHCB*3
LHYGeneProductAT1G01060 (TAIR)
LKP2GeneProductAT2G18915 (TAIR)
LUXGeneProductAT3G46640 (TAIR)
LWD1GeneProductAT1G12910 (TAIR)
LWD2GeneProductAT3G26640 (TAIR)
MAF1/

FLM/

AGL27		GeneProductAT1G77080 (TAIR)
  • 2 splice variants: FLM-δ and FLM-β: FLM-β overexpression delayed flowering, expression of FLM-δ accelerated the transition to flowering, incorporation of FLM isoform determines activity of the resulting SVP–FLM complex
MAF2GeneProductAT5G65050 (TAIR)
MAF3GeneProductAT5G65060 (TAIR) Considered "FLC-related"
MAF4GeneProductAT5G65070 (TAIR) Considered "FLC-related"
MAF5GeneProductAT5G65080 (TAIR) Considered "FLC-related"
MBD9GeneProductAT3G01460 (TAIR)
MEA/

SDG5/

FIS1		GeneProductAT1G02580 (TAIR)
MFTGeneProductAT1G18100 (TAIR)
MSI1GeneProductAT5G58230 (TAIR)
NDPK2GeneProductAT5G63310 (TAIR) INTERACTS WITH PRMT5 TO PROMOTE VEGETATIVE GROWTH
NF-YA10GeneProductAT5G06510 (TAIR)
NF-YA1GeneProductAT5G12840 (TAIR)
NF-YA2GeneProductAT3G05690 (TAIR)
NF-YA3GeneProductAT1G72830 (TAIR)
NF-YA4GeneProductAT2G34720 (TAIR)
NF-YA5GeneProductAT1G54160 (TAIR)
NF-YA6GeneProductAT3G14020 (TAIR)
NF-YA7GeneProductAT1G30500 (TAIR)
NF-YA8GeneProductAT1G17590 (TAIR)
NF-YA9GeneProductAT3G20910 (TAIR)
NF-YB10GeneProductAT3G53340 (TAIR)
NF-YB11GeneProductAT2G27470 (TAIR)
NF-YB12GeneProductAT5G08190 (TAIR)
NF-YB13GeneProductAT5G23090 (TAIR)
NF-YB1GeneProductAT2G38880 (TAIR)
NF-YB2GeneProductAT5G47640 (TAIR)
NF-YB3GeneProductAT4G14540 (TAIR)
NF-YB4GeneProductAT1G09030 (TAIR)
NF-YB5GeneProductAT2G47810 (TAIR)
NF-YB6GeneProductAT5G47670 (TAIR)
NF-YB7GeneProductAT2G13570 (TAIR)
NF-YB8GeneProductAT2G37060 (TAIR)
NF-YB9GeneProductAT1G21970 (TAIR)
NF-YC10GeneProductAT1G07980 (TAIR)
NF-YC11GeneProductAT3G12480 (TAIR)
NF-YC12GeneProductAT5G38140 (TAIR)
NF-YC13GeneProductAT5G43250 (TAIR)
NF-YC1GeneProductAT3G48590 (TAIR)
NF-YC2GeneProductAT1G56170 (TAIR)
NF-YC3GeneProductAT1G54830 (TAIR)
NF-YC4GeneProductAT5G63470 (TAIR)
NF-YC5GeneProductAT5G50490 (TAIR)
NF-YC6GeneProductAT5G50480 (TAIR)
NF-YC7GeneProductAT5G50470 (TAIR)
NF-YC8GeneProductAT5G27910 (TAIR)
NF-YC9GeneProductAT1G08970 (TAIR)
NUCGeneProductAT5G44160 (TAIR) Reciprocal BLAST showed that NUC/IDD8 is homologous to rice ID1
PAF1GeneProductAT5G42790 (TAIR)
PAF2GeneProductAT1G47250 (TAIR) Related to flowering; no pathway found.
PCFS4GeneProductAT4G04885 (TAIR) Forms a complex with FY
PEPGeneProductAT4G26000 (TAIR) FLK paralog
PFT1GeneProductAT1G25540 (TAIR)
PHP/ CDC73GeneProductAT3G22590 (TAIR)
PHYAGeneProductAT1G09570 (TAIR)
PHYBGeneProductAT2G18790 (TAIR)
PHYCGeneProductAT5G35840 (TAIR)
PHYDGeneProductAT4G16250 (TAIR)
PHYEGeneProductAT4G18130 (TAIR)
PIE1GeneProductAT3G12810 (TAIR) Denotes the SWR1 complex consisting of PIE1,SEF1 and ARP6
PIF3GeneProductAT1G09530 (TAIR)
PIF4GeneProductAT2G43010 (TAIR)
PIF6GeneProductAT3G62090 (TAIR)
PIF7GeneProductAT5G61270 (TAIR)
PIL6GeneProductAT3G59060 (TAIR)
PIN1ATGeneProductAT2G18040 (TAIR)
PKDM7CGeneProductAT2G34880 (TAIR) Due to high homology with PKDM7B, may also be involved with downregulation of FT/TSF
PKDM7DGeneProductAT1G08620 (TAIR) PKDM7D. Due to high homology with PKDM7B, may also be involved with downregulation of FT/TSF
PRR3GeneProductAT5G60100 (TAIR)
PRR5GeneProductAT5G24470 (TAIR)
PRR7GeneProductAT5G02810 (TAIR)
PRR9GeneProductAT2G46790 (TAIR)
RAV1GeneProductAT1G13260 (TAIR) RAV1 is an orthologue of TEM1 and TEM2
RAVL2 GeneProductAT1G50680 (TAIR) Assigned by Mamatha Hanumappa, 18-Nov-2011
RAVL3 GeneProductAT1G51120 (TAIR) Assigned by Mamatha Hanumappa, 18-Nov-2011
RBX1GeneProductAT5G20570 (TAIR)
REF6GeneProductAT3G48430 (TAIR) In other pathway REF6 is listed as interacting with FT - please edit BES1 recruits other transcriptional regulators such as ELF6 and REF6 to regulate target gene expression and coordinate BR responses with other developmental processes such as control of flowering time
RFI2GeneProductAT2G47700 (TAIR) RING-domain zinc finger protein
RGA1GeneProductAT2G01570 (TAIR)
RGL1GeneProductAT1G66350 (TAIR)
RGL2GeneProductAT3G03450 (TAIR)
RGL3GeneProductAT5G17490 (TAIR)
RVE8GeneProductAT3G09600 (TAIR)
  • Evidence is for binding to the evening element (EE) in the TOC1 promoter
  • Regulation of circadian clock by modulating the pattern of histone 3 (H3) acetylation
SAL1GeneProductAT5G63980 (TAIR) Related to flowering; no pathway found.
SDG26GeneProductAT1G76710 (TAIR)
SDG9/

SUVH5/

CZS		GeneProductAT2G35160 (TAIR)
SEF/AtSWC6GeneProductAT5G37055 (TAIR) This denotes the SWR1 complex consisting of PIE1,SEF1 and ARP6
SEFGeneProductAT5G37055 (TAIR) Denotes the SWR1 complex consisting of PIE1,SEF1 and ARP6
SFR6GeneProductAT4G04920 (TAIR) Related to flowering. SFR6 acts upstream of CCA1 GI and TOC1
SINAT5GeneProductAT5G53360 (TAIR) E3 ubiquitin ligase
SIZ1GeneProductAT5G60410 (TAIR)
SKB1GeneProductAT4G31120 (TAIR) SKB1;Represses FLC by H4R3sme2 histone demethylation of promoter
SLY1GeneProductAT4G24210 (TAIR)
SMZGeneProductAT3G54990 (TAIR)
SNEGeneProductAT5G48170 (TAIR)
SNZGeneProductAT2G39250 (TAIR) RAV1 is an orthologue of TEM1 and TEM2
SOC1GeneProductAT2G45660 (TAIR) AGL20
SPA1GeneProductAT2G46340 (TAIR)
SPA2GeneProductAT4G11110 (TAIR)
SPA3GeneProductAT3G15354 (TAIR)
SPA4GeneProductAT1G53090 (TAIR)
SPL10GeneProductAT1G27370 (TAIR)
SPL15GeneProductAT3G57920 (TAIR)
SPL3GeneProductAT2G33810 (TAIR)
SPL4GeneProductAT1G53160 (TAIR) Most likely has overlapping roles with SPL3
SPL5GeneProductAT3G15270 (TAIR) Most likely has overlapping roles with SPL3
SPL9GeneProductAT2G42200 (TAIR)
SPYGeneProductAT3G11540 (TAIR)
SRR1GeneProductAT5G59560 (TAIR)
SRT2GeneProductAT5G09230 (TAIR)
STO/ BBX24GeneProductAT1G06040 (TAIR)
SUF4GeneProductAT1G30970 (TAIR)
SUS4GeneProductAT3G43190 (TAIR)
SVPGeneProductAT2G22540 (TAIR)
SWNGeneProductAT4G02020 (TAIR)
SYP22GeneProductAT5G46860 (TAIR)
TEM1GeneProductAT1G25560 (TAIR) AP2/ERF and B3 DNA-binding domain
TEM2GeneProductAT1G68840 (TAIR)
  • TEM2 is synonomous with RAV2
  • AP2/ERF and a B3 DNA-binding domain
TFL1GeneProductAT5G03840 (TAIR)
TFL2/ LHP1GeneProductAT5G17690 (TAIR)
TFL2GeneProductAT5G17690 (TAIR)
TICGeneProductAT3G22380 (TAIR)
TOC1/PRR1GeneProductAT5G61380 (TAIR) PRR1
TOE1GeneProductAT2G28550 (TAIR)
TOE2GeneProductAT5G60120 (TAIR) DL4430C
TOE3 GeneProductAT5G67180 (TAIR) DL4430C
TPS1GeneProductAT1G78580 (TAIR)
TSFGeneProductAT4G20370 (TAIR) Partially redundant paralog of FT
U2AF35AGeneProductAT1G27650 (TAIR) Splicing factor
VEL1/ VIL2GeneProductAT4G30200 (TAIR)
VEL3GeneProductAT2G18870 (TAIR)
VIL1/ VRN5GeneProductAT3G24440 (TAIR)
VIL3/ VEL2GeneProductAT2G18880 (TAIR)
VIN3GeneProductAT5G57380 (TAIR) chromatin remodeling PHD finger protein
VIP3GeneProductAT4G29830 (TAIR)
VIP4GeneProductAT5G61150 (TAIR)
VRN1GeneProductAT3G18990 (TAIR)
VRN2GeneProductAT4G16845 (TAIR)
WERGeneProductAT5G14750 (TAIR) Regulates/maintains FT mRNA stability in long days. Not co-localized with FT; controls flowering through photoperiod pathway.
WNK1GeneProductAT3G04910 (TAIR)
WNK5GeneProductAT3G51630 (TAIR) mutant is late flowering (see TAIR entry): Involved in flowering: non-traceable author statement: Pavel Lizal et al 2004 Related to flowering; no pathway found.
WNK8GeneProductAT5G41990 (TAIR)
ZTLGeneProductAT5G57360 (TAIR)
bZIP13 GeneProductAT5G44080 (TAIR)
miRNA156RnaAJ493620 (EMBL)
miRNA172RnaAJ496802 (EMBL)

Annotated Interactions

No annotated interactions

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