Chloroplastic amino acid biosynthesis (Arabidopsis thaliana)
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Description
Unlike animals, plants are able to de novo synthesize these amino acids from pyruvate, 2-oxobutanoate and acetyl-CoA. In plants, biosynthesis follows the typical reaction pathways established for the formation of these amino acids in microorganisms. Val and Ile are synthesized in two parallel pathways using a single set of enzymes. The pathway to Leu branches of from the final intermediate of Val biosynthesis. The formation of this amino acid requires a three-step pathway generating a 2-oxoacid elongated by a methylene group. In Arabidopsis thaliana and other Brassicaceae, a homologous three-step pathway is also involved in Met chain elongation required for the biosynthesis of aliphatic glucosinolates, an important class of specialized metabolites.
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Ontology Terms
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DataNodes
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Name | Type | Database reference | Comment |
---|---|---|---|
2,3-dihydroxy-3-methylvalerate | Metabolite | HMDB0012140 (HMDB) | |
2,3-dihydroxy-isovalerate | Metabolite | HMDB0012141 (HMDB) | |
2,6-diaminopimelate | Metabolite | ||
2-Acetolactate | Metabolite | HMDB0006855 (HMDB) | |
2-aceto-2-hydroxybutanoate | Metabolite | ||
2-oxo-3-methylvalerate | Metabolite | ||
2-oxo-isovalerate | Metabolite | ||
2-oxobutanoate | Metabolite | ||
2-oxoglutarate | Metabolite | ||
5-methyltetrahydropteroyltri glutamate | Metabolite | ||
Acetyl-CoA | Metabolite | ||
CO2 | Metabolite | ||
CoA | Metabolite | ||
Cystathionine | Metabolite | HMDB0000099 (HMDB) | |
Cysteine and Methionine Biosynthesis | Pathway | ||
Cysteine | Metabolite | HMDB0000574 (HMDB) | |
Glycolysis | Pathway | ||
H+ | Metabolite | ||
H2O | Metabolite | ||
HS | Metabolite | ||
Homocysteine | Metabolite | HMDB0000742 (HMDB) | |
Isoleucine | Metabolite | HMDB0000172 (HMDB) | |
Lysine Biosynthesis | Pathway | ||
Methionine | Metabolite | HMDB0000696 (HMDB) | |
NADP+ | Metabolite | HMDB0000217 (HMDB) | |
NADPH | Metabolite | HMDB0000221 (HMDB) | |
NH3 | Metabolite | ||
O-acetyl-L-serine | Metabolite | ||
Serine | Metabolite | HMDB0000187 (HMDB) | |
Valine and Isoleucine Biosynthesis | Pathway | ||
Valine | Metabolite | HMDB0000883 (HMDB) | |
acetate | Metabolite | ||
acetolactate synthase LSU | Protein | P17597 (Uniprot-TrEMBL) | |
acetolactate synthase SSU 1 | Protein | Q9FFF4 (Uniprot-TrEMBL) | |
acetolactate synthase SSU 2 | Protein | Q93YZ7 (Uniprot-TrEMBL) | |
aspartate | Metabolite | ||
branched-chain-amino-acid transaminase 2 | Protein | Q9M439 (Uniprot-TrEMBL) | |
branched-chain-amino-acid transaminase 3 | Protein | Q9M401 (Uniprot-TrEMBL) | |
branched-chain-amino-acid transaminase 5 | Protein | Q9FYA6 (Uniprot-TrEMBL) | |
cystathionine beta-lyase | Protein | P53780 (Uniprot-TrEMBL) | |
cystathionine gamma-lyase | Protein | F4K5T2 (Uniprot-TrEMBL) | |
cysteine synthase | Protein | P47999 (Uniprot-TrEMBL) | |
diaminopimelate decarboxylase 1 | Protein | Q949X7 (Uniprot-TrEMBL) | |
diaminopimelate decarboxylase 2 | Protein | Q94A94 (Uniprot-TrEMBL) | |
diaminopimelate epimerase | Protein | Q9LFG2 (Uniprot-TrEMBL) | |
dihydroxy-acid dehydratase | Protein | AT3G23940 (Ensembl) | |
glutamate | Metabolite | ||
ketol-acid reductoisomerase | Protein | Q05758 (Uniprot-TrEMBL) | |
lysine | Metabolite | HMDB0000182 (HMDB) | |
meso-2,6-diaminopimelate | Metabolite | ||
methionine synthase 3 | Protein | Q0WNZ5 (Uniprot-TrEMBL) | |
pyruvate | Metabolite | ||
serine acetyltransferase 1 | Protein | Q42588 (Uniprot-TrEMBL) | |
serine racemase | Protein | Q2PGG3 (Uniprot-TrEMBL) | |
tetrahydropteroyltri glutamate | Metabolite |
Annotated Interactions
No annotated interactions