Assembly of collagen fibrils and other multimeric structures (Homo sapiens)

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25, 342014, 1810, 159, 1911, 23, 24383, 301, 36332117, 3994, 16, 375, 12, 26211427318, 3319, 28629, 32772229, 32cytosol3x4Hyp-COL6A1 3x4Hyp-GalHyl-COL6A1 Collagen type Ifibril with freehydroxylysinesLAMB3 4-hydroxyprolyl collagen alpha-1(XI) chain Collagen type VII-NC2 hexamerCTSS Collagen type II fibril Collagen type III fibre 5-hydroxylysyl-collagen alpha-1(XI) chain 3x4Hyp-GalHyl-COL9A3 GalHyl-COL2A1(182-1241) 3x4Hyp-3Hyp-COL8A2 COL15A1(1212-1388)3x4Hyp-3Hyp-5Hyl-COL1A2 MMP20 Collagen type II fibril 5Hyl-COL15A1(28-1388) Collagen type XII fibril Collagen type XII,XIV fibrils3x4Hyp-3Hyp-GlcGalHyl-COL2A1(182-1241) 5Hyl-COL8A2 3x4Hyp-3Hyp-5Hyl-COL9A2 COL3A1 Collagen type IV alpha3.alpha4.alpha5 network 3x4Hyp-GalHyl-COL2A1(182-1241) 3x4Hyp-3Hyp-GlcGalHyl-COL10A1 3,4-Hyp 5-Hyl-collagen alpha-1(XI) chain COL18A1(1572-11754)3x4Hyp-3Hyp-GalHyl-COL8A1(28-744) 3x4Hyp-GalHyl-COL7A1 3x4Hyp-GalHyl-COL1A2 3,4-hydroxyprolyl-collagen alpha-1(XI) chain 3x4Hyp-GlcGalHyl-COL9A2 3x4Hyp-GlcGalHyl-COL1A2 DST-3 GalHyl-COL9A1 5Hyl-COL9A2 3x4Hyp-5Hyl-COL1A1 3x4Hyp-3Hyp-GalHyl-COL18A1(24-1754) COL10A1 3x4Hyp-5Hyl-COL7A1(17-2821) LAMC2 3x4Hyp-GalHyl-COL10A1 3x4Hyp-COL10A1 GalHyl-COL9A2 3x4Hyp-3Hyp-GlcGalHyl-COL7A1 3x4Hyp-3Hyp-5Hyl-COL18A1(24-1754) Sulfilimine-containing collagen type IV alpha3.alpha4.alpha5 network Type I hemidesmosomecomplex3x4Hyp-3Hyp-COL1A1 3x4Hyp-3Hyp-GalHyl-COL8A2 5Hyl-COL9A3 3x4Hyp-GlcGalHyl-COL6A2 TLL1 4-Hyp 5-Hyl collagen alpha-2(XI) chain 3x4Hyp-3Hyp-GlcGalHyl-COL9A1 Br- GalHyl-COL7A1 GlcGalHyl-COL6A2 3x4Hyp-5Hyl-COL9A1 3x4Hyp-GalHyl-COL9A1 PXDN:Br-3x4Hyp-3Hyp-5Hyl-COL7A1 Collagen type I fibril Collagen type XXIV fibre COL1A1 COL27A1 3,4-Hyp 5-Gal-Hyl-collagen alpha-1(XI) chain LOXL4(25-?) 3x4Hyp-GalHyl-COL27A1 LAMC2 BPAG1e:PlectinLOXL2(26-?) Collagen type XIV Collagen type XI fibril 3x4Hyp-3Hyp-GalHyl-COL9A3 MMP7(95-267) Collagen IVCollagen type XIfibrilCOL24A1(?-?) 3x4Hyp-COL3A1 3x4Hyp-COL1A2 3x4Hyp-3Hyp-GlcGalHyl-COL9A2 GlcGalHyl-COL2A1(182-1241) 3x4Hyp-3Hyp-5Hyl-COL6A1 GlcGalHyl-COL9A2 3x4Hyp-3Hyp-GalHyl-COL15A1(28-1388) Collagen alpha-6(VI) chains 3x4Hyp-5Hyl-COL9A2 3x4Hyp-GlcGalHyl-COL9A3 5Hyl-COL2A1(182-1241) 3x4Hyp-3Hyp-GlcGalHyl-COL9A3 3x4Hyp-3Hyp-5Hyl-COL8A1(28-744) 3Hyp-4Hyp-COL9A3 3x4Hyp-GalHyl-COL3A1 GlcGalHyl-COL9A3 LOXL3(?-753) 3x4Hyp-COL9A3 GlcGalHyl-COL7A1 GlcGalHyl-COL7A1(17-2821) Glu-Gal-Hyl-collagen alpha-1(XI) chain 3x4Hyp-3Hyp-GlcGalHyl-COL15A1(28-1388) 5Hyl-COL7A1(2822-2944) TLL2 Collagentype1fibrilscross-linkedbydehydro-lysinonorleucine crosslinks5Hyl-COL7A1 Prolysyl oxidasesCollagen type I fibril with deH-HLNL 3x4Hyp-3Hyp-GalHyl-COL24A1(?-?) 3x4Hyp-5Hyl-COL9A2 3x4Hyp-5Hyl-COL9A3 3x4Hyp-3Hyp-5Hyl-COL9A2 3x4Hyp-3Hyp-GlcGalHyl-COL7A1 Collagen type I fibril GlcGalHyl-COL8A1(28-744) 3x4Hyp-3Hyp-COL9A1 Collagen type IV alpha3.alpha4.alpha5 network 3x4Hyp-COL7A1 Collagen type XV3x4Hyp-GalHyl-COL9A3 3x4Hyp-3Hyp-COL7A1(17-2821) 3x4Hyp-5Hyl-COL9A1 Collagen type X:typeII fibrils5Hyl-COL1A1 GlcGalHyl-COL15A1(28-1388) 3x4Hyp-COL9A3 LAMA3 Collagen type XVIIfibril:Integrinalpha6beta43x4Hyp-3Hyp-GlcGalHyl-COL6A2 COL9A2 3x4Hyp-GalHyl-COL8A1(28-744) 3x4Hyp-5Hyl-COL15A1(28-1388) Collagen typeI,II:XII,XIVfibrilsGlcGalHyl-COL3A1(154-1241) Collagen type I fibril LOXL2(?-774) Collagen type I fibril with lysyl-pyridinoline cross-links 3x4Hyp-COL8A1(?-744) Collagen type II fibril Collagen type IV alpha1.alpha1.alpha2 network 3x4Hyp-3Hyp-GalHyl-COL1A1 3x4Hyp-3Hyp-GlcGalHyl-COL7A1(17-2821) COL8A1(28-744) 3x4Hyp-5Hyl-COL2A1(182-1241) 3x4Hyp-GalHyl-COL1A1 3x4Hyp-GlcGalHyl-COL9A2 3x4Hyp-GlcGalHyl-COL9A1 3x4Hyp-3Hyp-GalHyl-COL7A1 3x4Hyp-3Hyp-COL9A2 3x4Hyp-COL9A2 Collagen type Ifibril withhydroxyallysines3x4Hyp-5Hyl-COL3A1 4-Hyp Glu-Gal-Hyl-collagen alpha-1(XI) chain 5Hyl-COL27A1 Collagen type I fibril 3x4Hyp-GlcGalHyl-COL6A1 3x4Hyp-3Hyp-GlcGalHyl-COL9A2 LOXL2(?-774) 3x4Hyp-GlcGalHyl-COL15A1(28-1388) Collagen type IV alpha1.alpha1.alpha2 network ITGB4 O2Collagen type VI network Collagen type I fibril Collagen networksCOL9A2 3x4Hyp-GalHyl-COL7A1(17-2821) ITGB4 3,4-hydroxyprolyl collagen alpha-2(XI) chain Collagen type I fibril 3x4Hyp-3Hyp-GalHyl-COL9A1 3x4Hyp-GalHyl-COL15A1(28-1388) BMP1 Laminin-3323x4Hyp-GlcGalHyl-COL7A1 3x4Hyp-5Hyl-COL18A1(24-1754) 3x4Hyp-COL9A1 CTSL(292-333) Collagen type IV alpha1.alpha2.alpha5.alpha6 network 3x4Hyp-GlcGalHyl-COL8A1(28-744) 3x4Hyp-GalHyl-COL9A2 GlcGalHyl-COL9A1 GlcGalHyl-COL6A1 3x4Hyp-3Hyp-5Hyl-COL7A1(2822-2944) 3x4Hyp-GalHyl-COL9A1 3,4-Hyp 5-Gal-Hyl-collagen alpha-2(XI) chain CTSL2 3x4Hyp-GalHyl-COL8A2 3x4Hyp-3Hyp-COL6A2 3x4Hyp-GlcGalHyl-COL7A1 COL1A2 Collagen type VII fibril MMP3(100-477) Collagen type XIV COL8A2 CD151Collagen alpha-5(VI) chains Collagen type I fibril GalHyl-COL9A2 3x4Hyp-3Hyp-GlcGalHyl-COL6A1 ITGA6(24-1130) COL18A1(?-1571)PCOLCE Collagen type I fibril with lysino-5-ketonorleucine cross-links LOX(22-168) Collagen alpha-2(XI) chain 3x4Hyp-3Hyp-GlcGalHyl-COL1A1 3x4Hyp-GlcGalHyl-COL7A1(17-2821) LAMB3 LOXL4 Collagen type I fibril with hydroxylysyl-pyridinoline cross-links 3x4Hyp-3Hyp-COL9A1 3x4Hyp-3Hyp-GlcGalHyl-COL27A1 ITGA6(24-1130) LAMA3 3x4Hyp-GalHyl-COL9A2 Collagen type VIII network 3x4Hyp-3Hyp-5Hyl-COL7A1(17-2821) 3x4Hyp-GlcGalHyl-COL18A1(24-1754) GalHyl-COL8A2 Collagen alpha-3(VI) chains 3x4Hyp-3Hyp-5Hyl-COL3A1 COL7A1(17-2821) Collagen type I fibril with lysyl-pyrrole cross-links 5Hyl-COL18A1(24-1754) Collagen type I fibril with hydroxylysino-5-ketonorleucine crosslinks 3x4Hyp-3Hyp-GalHyl-COL6A1 PLEC BMP1 3x4Hyp-3Hyp-GlcGalHyl-COL18A1(24-1754) 3x4Hyp-GalHyl-COL18A1(24-1754) Collagen type Ifibrils withlysyl-pyrrolecross-links3x4Hyp-3Hyp-GlcGalHyl-COL8A2 Collagen type XnetworkGlcGalHyl-COL27A1 Collagen type II fibril Collagen type XXVII fibre PLEC COL9A3 3Hyp-4Hyp-COL9A3 3x4Hyp-3Hyp-GalHyl-COL9A2 Collagen type I fibril Sulfilimine-containing collagen type IV alpha1.alpha2.alpha5.alpha6 network GlcGalHyl-COL1A2 3x4Hyp-3Hyp-5Hyl-COL24A1(?-?) Collagen type I fibril with deH-HLNL Collagen type VII fibril LOXL2 3x4Hyp-3Hyp-COL7A1 GlcGalHyl-COL7A1(2822-2944) NH33x4Hyp-3Hyp-5Hyl-COL1A1 3x4Hyp-COL8A2 3,4-Hyp Glu-Gal-Hyl-collagen alpha-2(XI) chain 3x4Hyp-3Hyp-COL18A1(24-1754) 3x4Hyp-COL7A1(2822-2944) LOXL1 Collagen type X network LOXL3 GlcGalHyl-COL9A3 Collagenalpha-1(VII) NC2region3x4Hyp-GlcGalHyl-COL9A1 COL9A1 3x4Hyp-3Hyp-5Hyl-COL9A1 3x4Hyp-3Hyp-5Hyl-COL9A3 GalHyl-COL18A1(24-1754) Collagen type VIINC2 proteinases3x4Hyp-5Hyl-COL10A1 TLL2 Collagen type II fibre 3x4Hyp-3Hyp-GlcGalHyl-COL3A1 Collagen type VIIfibril:Laminin-332Collagen type VIIhexamer3x4Hyp-COL2A1(182-1241) 5Hyl-COL10A1 GalHyl-COL3A1 GlcGalHyl-COL7A1 3x4Hyp-GalHyl-COL24A1(?-?) 4-Hyp 5-Gal-Hyl-collagen alpha-1(XI) chain GalHyl-COL9A3 3x4Hyp-3Hyp-GlcGalHyl-COL9A1 Collagen type XXIV fibril Collagen type V fibre Collagen type I fibril 5Hyl-COL6A1 LOXL1(26-94) 5Hyl-COL9A1 3x4Hyp-3Hyp-COL9A2 CollagentypeIfibrilswithhydroxylysyl-pyridinoline cross-linksCollagen type XVIIICollagen type Ifibrils withdeH-HLNLcross-links3x4Hyp-5Hyl-COL27A1 H2O2Collagen type I fibre 3x4Hyp-5Hyl-COL7A1 COL7A1 LAMA3 3x4Hyp-3Hyp-COL7A1(2822-2944) MMP13 Endostatin releasingproteases3x4Hyp-GlcGalHyl-COL8A2 3x4Hyp-3Hyp-5Hyl-COL8A2 GalHyl-COL9A3 GalHyl-COL15A1(28-1388) 3x4Hyp-3Hyp-GalHyl-COL2A1(182-1241) GalHyl-COL1A2 GalHyl-COL9A1 Collagen type Ifibril5-hydroxylysyl-collagen alpha-2(XI) chain PXDN LOX 3x4Hyp-GalHyl-COL6A2 LOXL3(26-?) 3x4Hyp-3Hyp-5Hyl-COL27A1 Collagen type I fibril 3x4Hyp-3Hyp-5Hyl-COL10A1 Glu-Gal-Hyl collagen alpha-2(XI) chain 3x4Hyp-5Hyl-COL24A1(?-?) 3x4Hyp-COL18A1(24-1754) 3x4Hyp-5Hyl-COL7A1 4-Hyp 5-Gal-Hyl collagen alpha-2(XI) chain LAMC2 COL15A1(28-1388) GalHyl-COL10A1 3x4Hyp-GalHyl-COL7A1 3x4Hyp-3Hyp-GalHyl-COL7A1(2822-2944) Tropocollagen type IV 3x4Hyp-3Hyp-GalHyl-COL7A1 COL6A1 5Hyl-COL9A3 LOXL4(?-756) ProcollagenC-proteinasesCollagen type I fibril GlcGalHyl-COL1A1 Collagen type VIIfibrilGlcGalHyl-COL9A2 3x4Hyp-GlcGalHyl-COL27A1 3x4Hyp-3Hyp-GalHyl-COL10A1 COL7A1 Collagen type XXVII fibril GlcGalHyl-COL10A1 LAMC2 Collagen type X network 3x4Hyp-GlcGalHyl-COL9A3 DST-3 MMP9(107-707) Collagen type I fibril with hydroxylysyl-pyrrole cross-links LOX(22-417) 3x4Hyp-3Hyp-5Hyl-COL9A3 LOXL4(?-756) GalHyl-COL27A1 3x4Hyp-GlcGalHyl-COL2A1(182-1241) Anchoring fibrilcomplex5Hyl-COL8A1(28-744) 5Hyl-COL3A1 GalHyl-COL7A1(2822-2944) Lysyl oxidasepropeptidesGalHyl-COL24A1(?-?) 3x4Hyp-5Hyl-COL6A2 5Hyl-COL9A1 Collagen type Ifibrils withlysyl-pyridinolinecross-linksCollagen V 3x4Hyp-COL9A1 5-Gal-Hyl-collagen alpha-1(XI) chain 3x4Hyp-COL1A1 5Hyl-COL24A1(?-?) GalHyl-COL6A2 CTSB(80-126) 3x4Hyp-COL24A1(?-?) 3x4Hyp-3Hyp-GlcGalHyl-COL7A1(2822-2944) 3x4Hyp-3Hyp-GalHyl-COL9A1 3x4Hyp-3Hyp-GalHyl-COL3A1 3x4Hyp-3Hyp-GlcGalHyl-COL8A1(28-744) COL9A1 COL7A1(2822-2944) GalHyl-COL1A1 TropocollagensLOXL1(26-574) 3x4Hyp-3Hyp-COL7A1 Network formingtropocollagensLAMA3 Collagen type XI fibril 5-Gal-Hyl collagen alpha-2(XI) chain Collagen type Ifibril withallysines3x4Hyp-COL6A2 3x4Hyp-3Hyp-GalHyl-COL9A3 Collagen type I fibril 5Hyl-COL1A2 3x4Hyp-3Hyp-5Hyl-COL2A1(182-1241) LAMB3 Lysyl oxidasesLOXL3(?-753) 3x4Hyp-3Hyp-COL1A2 GlcGalHyl-COL9A1 3x4Hyp-3Hyp-COL15A1(28-1388) GalHyl-COL7A1(17-2821) 3x4Hyp-3Hyp-COL6A1 Collagen alpha-1(XI) chain H2O2GlcGalHyl-COL8A2 Sulfilimine-containing collagen type IV alpha1.alpha1.alpha2 network H2OCOL2A1(182-1241) COL18A1(24-1754) 3x4Hyp-5Hyl-COL6A1 Collagen fibresCollagen type I, IIfibrils3x4Hyp-COL7A1 3x4Hyp-3Hyp-GlcGalHyl-COL24A1(?-?) 4-hydroxyprolyl collagen alpha-2(XI) chain GalHyl-COL6A1 LOX Collagen type IV alpha1.alpha2.alpha5.alpha6 network Collagen type XI fibre CD151 Collagen IV Collagen type II fibril 5Hyl-COL9A2 GalHyl-COL7A1 Collagen type VII fibril Tropocollagen type V 3x4Hyp-3Hyp-5Hyl-COL7A1 4-Hyp Glu-Gal-Hyl collagen alpha-2(XI) chain 3x4Hyp-3Hyp-5Hyl-COL9A1 LAMB3 3x4Hyp-GlcGalHyl-COL3A1 Collagen type XIfibril:Collagentype II fibril3x4Hyp-3Hyp-GlcGalHyl-COL1A2 5Hyl-COL7A1(17-2821) 3x4Hyp-3Hyp-5Hyl-COL15A1(28-1388) Collagen type XII fibril 3x4Hyp-GlcGalHyl-COL24A1(?-?) 3x4Hyp-3Hyp-GalHyl-COL27A1 3x4Hyp-3Hyp-5Hyl-COL6A2 CollagentypeIfibrilswithhistidino-hydroxylysinoleucine cross-links3x4Hyp-3Hyp-COL8A1(28-744) COL9A3 GalHyl-COL8A1(28-744) 3x4Hyp-3Hyp-COL3A1 COL6A2 CTSL(114-288) 3x4Hyp-3Hyp-GalHyl-COL6A2 3,4-Hyp Glu-Gal-Hyl-collagen alpha-1(XI) chain Collagen type XVII fibril 3x4Hyp-COL9A2 Cu2+ 3x4Hyp-3Hyp-COL10A1 GlcGalHyl-COL18A1(24-1754) 3x4Hyp-5Hyl-COL8A2 3x4Hyp-3Hyp-GalHyl-COL7A1(17-2821) 4-Hyp 5-Hyl-collagen alpha-1(XI) chain Collagenalpha-1(VII) trimerCollagen type II fibril 3x4Hyp-3Hyp-COL27A1 Collagen type IIfibril:Collagentype IXCollagentypeIfibrilswithhydroxylysino-5-ketonorleucine crosslinksCollagen type I fibril with dehydro-lysinonorleucine Collagen type IVnetworks withsulfiliminecross-links3x4Hyp-COL7A1(17-2821) 3x4Hyp-3Hyp-GalHyl-COL9A2 CollagentypeIfibrilswithlysino-5-ketonorleucine cross-linksCollagen type XVII fibril 3,4-Hyp 5-Hyl-collagen alpha-2(XI) chain 3x4Hyp-5Hyl-COL7A1(2822-2944) 3x4Hyp-GlcGalHyl-COL10A1 Collagen type IIfibrilGlcGalHyl-COL24A1(?-?) H2OCollagen type IX3x4Hyp-5Hyl-COL8A1(28-744) 3x4Hyp-3Hyp-COL24A1(?-?) Collagen type III fibril CollagentypeIfibrilswithhydroxylysyl-pyrrole cross-links3x4Hyp-COL15A1(28-1388) 3x4Hyp-3Hyp-GlcGalHyl-COL9A3 3x4Hyp-COL27A1 Collagen type I fibril 3x4Hyp-GalHyl-COL7A1(2822-2944) 3x4Hyp-3Hyp-GalHyl-COL1A2 Collagen fibrilsLOXL1 3x4Hyp-5Hyl-COL9A3 5Hyl-COL6A2 3x4Hyp-5Hyl-COL1A2 TLL1 3x4Hyp-GlcGalHyl-COL7A1(2822-2944) 3x4Hyp-GlcGalHyl-COL1A1 Lysyl oxidases:Cu2+3x4Hyp-3Hyp-COL2A1(182-1241) COL15A1(?-1211)5Hyl-COL7A1 2, 3513


Description

Collagen trimers in triple-helical form, referred to as procollagen or collagen molecules, are exported from the ER and trafficked through the Golgi network before secretion into the extracellular space. For fibrillar collagens namely types I, II, III, V, XI, XXIV and XXVII (Gordon & Hahn 2010, Ricard-Blum 2011) secretion is concomitant with processing of the N and C terminal collagen propeptides. These processed molecules are known as tropocollagens, considered to be the units of higher order collagen structures. They form within the extracellular space via a process that can proceed spontaneously, but in the cellular environment is regulated by many collagen binding proteins such as the FACIT (Fibril Associated Collagens with Interrupted Triple helices) family collagens and Small Leucine-Rich Proteoglycans (SLRPs). The architecture formed ultimately depends on the collagen subtype and the cellular conditions. Structures include the well-known fibrils and fibres formed by the major structural collagens type I and II plus several different types of supramolecular assembly (Bruckner 2010). The mechanical and physical properties of tissues depend on the spatial arrangement and composition of these collagen-containing structures (Kadler et al. 1996, Shoulders & Raines 2009, Birk & Bruckner 2011).

Fibrillar collagen structures are frequently heterotypic, composed of a major collagen type in association with smaller amounts of other types, e.g. type I collagen fibrils are associated with types III and V, while type II fibrils frequently contain types IX and XI (Wess 2005). Fibres composed exclusively of a single collagen type probably do not exist, as type I and II fibrils require collagens V and XI respectively as nucleators (Kadler et al. 2008, Wenstrup et al. 2011). Much of the structural understanding of collagen fibrils has been obtained with fibril-forming collagens, particularly type I, but some central features are believed to apply to at least the other fibrillar collagen subtypes (Wess 2005). Fibril diameter and length varies considerably, depending on the tissue and collagen types (Fang et al. 2012). The reasons for this are poorly understood (Wess 2005).

Some tissues such as skin have fibres that are approximately the same diameter while others such as tendon or cartilage have a bimodal distribution of thick and thin fibrils. Mature type I collagen fibrils in tendon are up to 1 cm in length, with a diameter of approx. 500 nm. An individual fibrillar collagen triple helix is less than 1.5 nm in diameter and around 300 nm long; collagen molecules must assemble to give rise to the higher-order fibril structure, a process known as fibrillogenesis, prevented by the presence of C-terminal propeptides (Kadler et al. 1987). In electron micrographs, fibrils have a banded appearance, due to regular gaps where fewer collagen molecules overlap, which occur because the fibrils are aligned in a quarter-stagger arrangement (Hodge & Petruska 1963). Collagen microfibrils are believed to have a quasi-hexagonal unit cell, with tropocollagen arranged to form supertwisted, right-handed microfibrils that interdigitate with neighbouring microfibrils, leading to a spiral-like structure for the mature collagen fibril (Orgel et al. 2006, Holmes & Kadler 2006).

Neighbouring tropocollagen monomers interact with each other and are cross-linked covalently by lysyl oxidase (Orgel et al. 2000, Maki 2006). Mature collagen fibrils are stabilized by lysyl oxidase-mediated cross-links. Hydroxylysyl pyridinoline and lysyl pyridinoline cross-links form between (hydroxy) lysine and hydroxylysine residues in bone and cartilage (Eyre et al. 1984). Arginoline cross-links can form in cartilage (Eyre et al. 2010); mature bovine articular cartilage contains roughly equimolar amounts of arginoline and hydroxylysyl pyridinoline based on peptide yields. Mature collagen fibrils in skin are stabilized by the lysyl oxidase-mediated cross-link histidinohydroxylysinonorleucine (Yamauch et al. 1987). Due to the quarter-staggered arrangement of collagen molecules in a fibril, telopeptides most often interact with the triple helix of a neighbouring collagen molecule in the fibril, except for collagen molecules in register staggered by 4D from another collagen molecule. Fibril aggregation in vitro can be unipolar or bipolar, influenced by temperature and levels of C-proteinase, suggesting a role for the N- and C- propeptides in regulation of the aggregation process (Kadler et al. 1996). In vivo, collagen molecules at the fibril surface may retain their N-propeptides, suggesting that this may limit further accretion, or alternatively represents a transient stage in a model whereby fibrils grow in diameter through a cycle of deposition, cleavage and further deposition (Chapman 1989).

In vivo, fibrils are often composed from more than one type of collagen. Type III collagen is found associated with type I collagen in dermal fibrils, with the collagen III on the periphery, suggesting a regulatory role (Fleischmajer et al. 1990). Type V collagen associates with type I collagen fibrils, where it may limit fibril diameter (Birk et al. 1990, White et al. 1997). Type IX associates with the surface of narrow diameter collagen II fibrils in cartilage and the cornea (Wu et al. 1992, Eyre et al. 2004). Highly specific patterns of crosslinking sites suggest that collagen IX functions in interfibrillar networking (Wess 2005). Type XII and XIV collagens are localized near the surface of banded collagen I fibrils (Nishiyama et al. 1994). Certain fibril-associated collagens with interrupted triple helices (FACITs) associate with the surface of collagen fibrils, where they may serve to limit fibril fusion and thereby regulate fibril diameter (Gordon & Hahn 2010). Collagen XV, a member of the multiplexin family, is almost exclusively associated with the fibrillar collagen network, in very close proximity to the basement membrane. In human tissues collagen XV is seen linking banded collagen fibers subjacent to the basement membrane (Amenta et al. 2005). Type XIV collagen, SLRPs and discoidin domain receptors also regulate fibrillogenesis (Ansorge et al. 2009, Kalamajski et al. 2010, Flynn et al. 2010).

Collagen IX is cross-linked to the surface of collagen type II fibrils (Eyre et al. 1987). Type XII and XIV collagens are found in association with type I (Walchli et al. 1994) and type II (Watt et al. 1992, Eyre 2002) fibrils in cartilage. They are thought to associate non-covalently via their COL1/NC1 domains (Watt et al. 1992, Eyre 2002).

Some non-fibrillar collagens form supramolecular assemblies that are distinct from typical fibrils. Collagen VII forms anchoring fibrils, composed of antiparallel dimers that connect the dermis to the epidermis (Bruckner-Tuderman 2009). During fibrillogenesis, the nascent type VII procollagen molecules dimerize in an antiparallel manner. The C-propeptides are then removed by Bone morphogenetic protein 1 (Rattenholl et al. 2002) and the processed antiparallel dimers aggregate laterally. Collagens VIII and X form hexagonal networks and collagen VI forms beaded filament (Gordon & Hahn 2010, Ricard-Blum et al. 2011). View original pathway at Reactome.

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  16. Villone D, Fritsch A, Koch M, Bruckner-Tuderman L, Hansen U, Bruckner P.; ''Supramolecular interactions in the dermo-epidermal junction zone: anchoring fibril-collagen VII tightly binds to banded collagen fibrils.''; PubMed Europe PMC Scholia
  17. Bhave G, Cummings CF, Vanacore RM, Kumagai-Cresse C, Ero-Tolliver IA, Rafi M, Kang JS, Pedchenko V, Fessler LI, Fessler JH, Hudson BG.; ''Peroxidasin forms sulfilimine chemical bonds using hypohalous acids in tissue genesis.''; PubMed Europe PMC Scholia
  18. Hashizume H, Hitomi J, Ushiki T.; ''Growth of collagen fibrils produced by human osteosarcoma cells: high-resolution scanning electron microscopy.''; PubMed Europe PMC Scholia
  19. Reiser K, McCormick RJ, Rucker RB.; ''Enzymatic and nonenzymatic cross-linking of collagen and elastin.''; PubMed Europe PMC Scholia
  20. Morris NP, Keene DR, Glanville RW, Bentz H, Burgeson RE.; ''The tissue form of type VII collagen is an antiparallel dimer.''; PubMed Europe PMC Scholia
  21. Eyre DR, Pietka T, Weis MA, Wu JJ.; ''Covalent cross-linking of the NC1 domain of collagen type IX to collagen type II in cartilage.''; PubMed Europe PMC Scholia
  22. Okada K, Kondo A, Ishikawa O, Miyachi Y.; ''Histidinohydroxylysinonorleucine, a trifunctional cross-link of type I collagen, in sun-exposed and sun-protected human skin.''; PubMed Europe PMC Scholia
  23. Karamatic Crew V, Burton N, Kagan A, Green CA, Levene C, Flinter F, Brady RL, Daniels G, Anstee DJ.; ''CD151, the first member of the tetraspanin (TM4) superfamily detected on erythrocytes, is essential for the correct assembly of human basement membranes in kidney and skin.''; PubMed Europe PMC Scholia
  24. Hopkinson SB, Findlay K, deHart GW, Jones JC.; ''Interaction of BP180 (type XVII collagen) and alpha6 integrin is necessary for stabilization of hemidesmosome structure.''; PubMed Europe PMC Scholia
  25. Orgel JP, San Antonio JD, Antipova O.; ''Molecular and structural mapping of collagen fibril interactions.''; PubMed Europe PMC Scholia
  26. Stone PJ, Bryan-Rhadfi J, Shaw HA, Franzblau C.; ''Isolation of hydroxylysyl pyridinoline, a mature collagen crosslink from neonatal rat aorta smooth muscle cell cultures.''; PubMed Europe PMC Scholia
  27. Robins SP, Bailey AJ.; ''The chemistry of the collagen cross-links. The mechanism of stabilization of the reducible intermediate cross-links.''; PubMed Europe PMC Scholia
  28. Lehto M, Sims TJ, Bailey AJ.; ''Skeletal muscle injury--molecular changes in the collagen during healing.''; PubMed Europe PMC Scholia
  29. Banse X, Sims TJ, Bailey AJ.; ''Mechanical properties of adult vertebral cancellous bone: correlation with collagen intermolecular cross-links.''; PubMed Europe PMC Scholia
  30. Uzel MI, Scott IC, Babakhanlou-Chase H, Palamakumbura AH, Pappano WN, Hong HH, Greenspan DS, Trackman PC.; ''Multiple bone morphogenetic protein 1-related mammalian metalloproteinases process pro-lysyl oxidase at the correct physiological site and control lysyl oxidase activation in mouse embryo fibroblast cultures.''; PubMed Europe PMC Scholia
  31. Siegel RC, Fu JC, Uto N, Horiuchi K, Fujimoto D.; ''Collagen cross-linking: lysyl oxidase dependent synthesis of pyridinoline in vitro: confirmation that pyridinoline is derived from collagen.''; PubMed Europe PMC Scholia
  32. Kuypers R, Tyler M, Kurth LB, Jenkins ID, Horgan DJ.; ''Identification of the loci of the collagen-associated Ehrlich chromogen in type I collagen confirms its role as a trivalent cross-link.''; PubMed Europe PMC Scholia
  33. Pinnell SR, Martin GR.; ''The cross-linking of collagen and elastin: enzymatic conversion of lysine in peptide linkage to alpha-aminoadipic-delta-semialdehyde (allysine) by an extract from bone.''; PubMed Europe PMC Scholia
  34. Kadler KE, Holmes DF, Trotter JA, Chapman JA.; ''Collagen fibril formation.''; PubMed Europe PMC Scholia
  35. Huber S, van der Rest M, Bruckner P, Rodriguez E, Winterhalter KH, Vaughan L.; ''Identification of the type IX collagen polypeptide chains. The alpha 2(IX) polypeptide carries the chondroitin sulfate chain(s).''; PubMed Europe PMC Scholia
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  38. Schmid TM, Linsenmayer TF.; ''Immunoelectron microscopy of type X collagen: supramolecular forms within embryonic chick cartilage.''; PubMed Europe PMC Scholia
  39. Vanacore R, Ham AJ, Voehler M, Sanders CR, Conrads TP, Veenstra TD, Sharpless KB, Dawson PE, Hudson BG.; ''A sulfilimine bond identified in collagen IV.''; PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
118517view09:58, 28 May 2021EweitzOntology Term : 'peptide and protein metabolic pathway' added !
114642view16:10, 25 January 2021ReactomeTeamReactome version 75
113090view11:15, 2 November 2020ReactomeTeamReactome version 74
112324view15:24, 9 October 2020ReactomeTeamReactome version 73
101223view11:11, 1 November 2018ReactomeTeamreactome version 66
100761view20:37, 31 October 2018ReactomeTeamreactome version 65
100305view19:14, 31 October 2018ReactomeTeamreactome version 64
99852view15:58, 31 October 2018ReactomeTeamreactome version 63
99409view14:34, 31 October 2018ReactomeTeamreactome version 62 (2nd attempt)
93410view11:22, 9 August 2017ReactomeTeamreactome version 61
86500view09:19, 11 July 2016ReactomeTeamreactome version 56
83231view10:26, 18 November 2015ReactomeTeamVersion54
81628view13:10, 21 August 2015ReactomeTeamVersion53
77089view08:38, 17 July 2014ReactomeTeamFixed remaining interactions
76795view12:17, 16 July 2014ReactomeTeamFixed remaining interactions
76118view10:18, 11 June 2014ReactomeTeamRe-fixing comment source
75830view11:39, 10 June 2014ReactomeTeamReactome 48 Update
75191view09:40, 9 May 2014Anwesha
74835view10:06, 30 April 2014ReactomeTeamNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
3,4-Hyp 5-Gal-Hyl-collagen alpha-1(XI) chain ProteinP12107 (Uniprot-TrEMBL)
3,4-Hyp 5-Gal-Hyl-collagen alpha-2(XI) chain ProteinP13942 (Uniprot-TrEMBL)
3,4-Hyp 5-Hyl-collagen alpha-1(XI) chain ProteinP12107 (Uniprot-TrEMBL)
3,4-Hyp 5-Hyl-collagen alpha-2(XI) chain ProteinP13942 (Uniprot-TrEMBL)
3,4-Hyp Glu-Gal-Hyl-collagen alpha-1(XI) chain ProteinP12107 (Uniprot-TrEMBL)
3,4-Hyp Glu-Gal-Hyl-collagen alpha-2(XI) chain ProteinP13942 (Uniprot-TrEMBL)
3,4-hydroxyprolyl collagen alpha-2(XI) chain ProteinP13942 (Uniprot-TrEMBL)
3,4-hydroxyprolyl-collagen alpha-1(XI) chain ProteinP12107 (Uniprot-TrEMBL)
3Hyp-4Hyp-COL9A3 ProteinQ14050 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL15A1(28-1388) ProteinP39059 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL18A1(24-1754) ProteinP39060 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL24A1(?-?) ProteinQ17RW2 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL2A1(182-1241) ProteinP02458 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL3A1 ProteinP02461 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL7A1(17-2821) ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL7A1(2822-2944) ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL8A1(28-744) ProteinP27658 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL9A1 ProteinP20849 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL9A2 ProteinQ14055 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL9A3 ProteinQ14050 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL15A1(28-1388) ProteinP39059 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL18A1(24-1754) ProteinP39060 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL24A1(?-?) ProteinQ17RW2 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL2A1(182-1241) ProteinP02458 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL3A1 ProteinP02461 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL7A1(17-2821) ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL7A1(2822-2944) ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL8A1(28-744) ProteinP27658 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL9A1 ProteinP20849 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL9A2 ProteinQ14055 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL15A1(28-1388) ProteinP39059 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL18A1(24-1754) ProteinP39060 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL24A1(?-?) ProteinQ17RW2 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL2A1(182-1241) ProteinP02458 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL3A1 ProteinP02461 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL7A1(17-2821) ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL7A1(2822-2944) ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL8A1(28-744) ProteinP27658 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL9A1 ProteinP20849 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL9A2 ProteinQ14055 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL9A3 ProteinQ14050 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL15A1(28-1388) ProteinP39059 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL18A1(24-1754) ProteinP39060 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL24A1(?-?) ProteinQ17RW2 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL2A1(182-1241) ProteinP02458 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL3A1 ProteinP02461 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL7A1(17-2821) ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL7A1(2822-2944) ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL8A1(28-744) ProteinP27658 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL9A1 ProteinP20849 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL9A2 ProteinQ14055 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL9A3 ProteinQ14050 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL15A1(28-1388) ProteinP39059 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL18A1(24-1754) ProteinP39060 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL24A1(?-?) ProteinQ17RW2 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL2A1(182-1241) ProteinP02458 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL3A1 ProteinP02461 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL7A1(17-2821) ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL7A1(2822-2944) ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL8A1(28-744) ProteinP27658 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL9A1 ProteinP20849 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL9A2 ProteinQ14055 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL9A3 ProteinQ14050 (Uniprot-TrEMBL)
3x4Hyp-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
3x4Hyp-COL15A1(28-1388) ProteinP39059 (Uniprot-TrEMBL)
3x4Hyp-COL18A1(24-1754) ProteinP39060 (Uniprot-TrEMBL)
3x4Hyp-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
3x4Hyp-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
3x4Hyp-COL24A1(?-?) ProteinQ17RW2 (Uniprot-TrEMBL)
3x4Hyp-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
3x4Hyp-COL2A1(182-1241) ProteinP02458 (Uniprot-TrEMBL)
3x4Hyp-COL3A1 ProteinP02461 (Uniprot-TrEMBL)
3x4Hyp-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
3x4Hyp-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
3x4Hyp-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-COL7A1(17-2821) ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-COL7A1(2822-2944) ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-COL8A1(?-744) ProteinP27658 (Uniprot-TrEMBL)
3x4Hyp-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
3x4Hyp-COL9A1 ProteinP20849 (Uniprot-TrEMBL)
3x4Hyp-COL9A2 ProteinQ14055 (Uniprot-TrEMBL)
3x4Hyp-COL9A3 ProteinQ14050 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL15A1(28-1388) ProteinP39059 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL18A1(24-1754) ProteinP39060 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL24A1(?-?) ProteinQ17RW2 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL2A1(182-1241) ProteinP02458 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL3A1 ProteinP02461 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL7A1(17-2821) ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL7A1(2822-2944) ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL8A1(28-744) ProteinP27658 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL9A1 ProteinP20849 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL9A2 ProteinQ14055 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL9A3 ProteinQ14050 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL15A1(28-1388) ProteinP39059 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL18A1(24-1754) ProteinP39060 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL24A1(?-?) ProteinQ17RW2 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL2A1(182-1241) ProteinP02458 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL3A1 ProteinP02461 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL7A1(17-2821) ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL7A1(2822-2944) ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL8A1(28-744) ProteinP27658 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL9A1 ProteinP20849 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL9A2 ProteinQ14055 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL9A3 ProteinQ14050 (Uniprot-TrEMBL)
4-Hyp 5-Gal-Hyl collagen alpha-2(XI) chain ProteinP13942 (Uniprot-TrEMBL)
4-Hyp 5-Gal-Hyl-collagen alpha-1(XI) chain ProteinP12107 (Uniprot-TrEMBL)
4-Hyp 5-Hyl collagen alpha-2(XI) chain ProteinP13942 (Uniprot-TrEMBL)
4-Hyp 5-Hyl-collagen alpha-1(XI) chain ProteinP12107 (Uniprot-TrEMBL)
4-Hyp Glu-Gal-Hyl collagen alpha-2(XI) chain ProteinP13942 (Uniprot-TrEMBL)
4-Hyp Glu-Gal-Hyl-collagen alpha-1(XI) chain ProteinP12107 (Uniprot-TrEMBL)
4-hydroxyprolyl collagen alpha-1(XI) chain ProteinP12107 (Uniprot-TrEMBL)
4-hydroxyprolyl collagen alpha-2(XI) chain ProteinP13942 (Uniprot-TrEMBL)
5-Gal-Hyl collagen alpha-2(XI) chain ProteinP13942 (Uniprot-TrEMBL)
5-Gal-Hyl-collagen alpha-1(XI) chain ProteinP12107 (Uniprot-TrEMBL)
5-hydroxylysyl-collagen alpha-1(XI) chain ProteinP12107 (Uniprot-TrEMBL)
5-hydroxylysyl-collagen alpha-2(XI) chain ProteinP13942 (Uniprot-TrEMBL)
5Hyl-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
5Hyl-COL15A1(28-1388) ProteinP39059 (Uniprot-TrEMBL)
5Hyl-COL18A1(24-1754) ProteinP39060 (Uniprot-TrEMBL)
5Hyl-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
5Hyl-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
5Hyl-COL24A1(?-?) ProteinQ17RW2 (Uniprot-TrEMBL)
5Hyl-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
5Hyl-COL2A1(182-1241) ProteinP02458 (Uniprot-TrEMBL)
5Hyl-COL3A1 ProteinP02461 (Uniprot-TrEMBL)
5Hyl-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
5Hyl-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
5Hyl-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
5Hyl-COL7A1(17-2821) ProteinQ02388 (Uniprot-TrEMBL)
5Hyl-COL7A1(2822-2944) ProteinQ02388 (Uniprot-TrEMBL)
5Hyl-COL8A1(28-744) ProteinP27658 (Uniprot-TrEMBL)
5Hyl-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
5Hyl-COL9A1 ProteinP20849 (Uniprot-TrEMBL)
5Hyl-COL9A2 ProteinQ14055 (Uniprot-TrEMBL)
5Hyl-COL9A3 ProteinQ14050 (Uniprot-TrEMBL)
Anchoring fibril complexComplexR-HSA-2399659 (Reactome)
BMP1 ProteinP13497 (Uniprot-TrEMBL)
BPAG1e:PlectinComplexR-HSA-2220789 (Reactome)
Br- MetaboliteCHEBI:15858 (ChEBI)
CD151 ProteinP48509 (Uniprot-TrEMBL)
CD151ProteinP48509 (Uniprot-TrEMBL)
COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
COL15A1(1212-1388)ProteinP39059 (Uniprot-TrEMBL)
COL15A1(28-1388) ProteinP39059 (Uniprot-TrEMBL)
COL15A1(?-1211)ProteinP39059 (Uniprot-TrEMBL)
COL18A1(1572-11754)ProteinP39060 (Uniprot-TrEMBL)
COL18A1(24-1754) ProteinP39060 (Uniprot-TrEMBL)
COL18A1(?-1571)ProteinP39060 (Uniprot-TrEMBL)
COL1A1 ProteinP02452 (Uniprot-TrEMBL)
COL1A2 ProteinP08123 (Uniprot-TrEMBL)
COL24A1(?-?) ProteinQ17RW2 (Uniprot-TrEMBL)
COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
COL2A1(182-1241) ProteinP02458 (Uniprot-TrEMBL)
COL3A1 ProteinP02461 (Uniprot-TrEMBL)
COL6A1 ProteinP12109 (Uniprot-TrEMBL)
COL6A2 ProteinP12110 (Uniprot-TrEMBL)
COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
COL7A1(17-2821) ProteinQ02388 (Uniprot-TrEMBL)
COL7A1(2822-2944) ProteinQ02388 (Uniprot-TrEMBL)
COL8A1(28-744) ProteinP27658 (Uniprot-TrEMBL)
COL8A2 ProteinP25067 (Uniprot-TrEMBL)
COL9A1 ProteinP20849 (Uniprot-TrEMBL)
COL9A2 ProteinQ14055 (Uniprot-TrEMBL)
COL9A3 ProteinQ14050 (Uniprot-TrEMBL)
CTSB(80-126) ProteinP07858 (Uniprot-TrEMBL)
CTSL(114-288) ProteinP07711 (Uniprot-TrEMBL)
CTSL(292-333) ProteinP07711 (Uniprot-TrEMBL)
CTSL2 ProteinO60911 (Uniprot-TrEMBL)
CTSS ProteinP25774 (Uniprot-TrEMBL)
Collagen

alpha-1(VII) NC2

region
ComplexR-HSA-3605693 (Reactome)
Collagen alpha-1(VII) trimerComplexR-HSA-2022124 (Reactome)
Collagen

type 1 fibrils cross-linked by

dehydro-lysinonorleucine crosslinks
ComplexR-HSA-2396037 (Reactome)
Collagen

type I fibrils with

histidino-hydroxylysinoleucine cross-links
ComplexR-HSA-2399496 (Reactome)
Collagen

type I fibrils with

hydroxylysino-5-ketonorleucine crosslinks
ComplexR-HSA-2396143 (Reactome)
Collagen

type I fibrils with

hydroxylysyl-pyridinoline cross-links
ComplexR-HSA-2396133 (Reactome)
Collagen

type I fibrils with

hydroxylysyl-pyrrole cross-links
ComplexR-HSA-2396060 (Reactome)
Collagen

type I fibrils with

lysino-5-ketonorleucine cross-links
ComplexR-HSA-2447200 (Reactome)
Collagen IV R-HSA-2564668 (Reactome)
Collagen IVComplexR-HSA-2564668 (Reactome)
Collagen V R-HSA-1609685 (Reactome)
Collagen alpha-1(XI) chain ProteinP12107 (Uniprot-TrEMBL)
Collagen alpha-2(XI) chain ProteinP13942 (Uniprot-TrEMBL)
Collagen alpha-3(VI) chains R-HSA-2192698 (Reactome)
Collagen alpha-5(VI) chains R-HSA-2127458 (Reactome)
Collagen alpha-6(VI) chains R-HSA-2127492 (Reactome)
Collagen fibresComplexR-HSA-2214304 (Reactome)
Collagen fibrilsComplexR-HSA-2127450 (Reactome)
Collagen networksComplexR-HSA-2214293 (Reactome)
Collagen type

I,II:XII,XIV

fibrils
ComplexR-HSA-2220795 (Reactome)
Collagen type I

fibril with

allysines
R-HSA-2228714 (Reactome)
Collagen type I

fibril with

hydroxyallysines
R-HSA-2396055 (Reactome)
Collagen type I

fibril with free

hydroxylysines
R-HSA-2428940 (Reactome)
Collagen type I fibrilR-HSA-1474201 (Reactome)
Collagen type I

fibrils with deH-HLNL

cross-links
ComplexR-HSA-2396268 (Reactome)
Collagen type I

fibrils with lysyl-pyridinoline

cross-links
ComplexR-HSA-2396051 (Reactome)
Collagen type I

fibrils with lysyl-pyrrole

cross-links
ComplexR-HSA-2396474 (Reactome)
Collagen type I fibre R-HSA-2214305 (Reactome)
Collagen type I fibril R-HSA-1474201 (Reactome)
Collagen type I fibril with deH-HLNL R-HSA-2396378 (Reactome)
Collagen type I fibril with dehydro-lysinonorleucine R-HSA-2396093 (Reactome)
Collagen type I fibril with hydroxylysino-5-ketonorleucine crosslinks R-HSA-2396311 (Reactome)
Collagen type I fibril with hydroxylysyl-pyridinoline cross-links R-HSA-2396360 (Reactome)
Collagen type I fibril with hydroxylysyl-pyrrole cross-links R-HSA-2396116 (Reactome)
Collagen type I fibril with lysino-5-ketonorleucine cross-links R-HSA-2396205 (Reactome)
Collagen type I fibril with lysyl-pyridinoline cross-links R-HSA-2396105 (Reactome)
Collagen type I fibril with lysyl-pyrrole cross-links R-HSA-2396231 (Reactome)
Collagen type I, II fibrilsComplexR-HSA-2220802 (Reactome)
Collagen type II

fibril:Collagen

type IX
ComplexR-HSA-2220801 (Reactome)
Collagen type II fibrilR-HSA-1474209 (Reactome)
Collagen type II fibre R-HSA-2214299 (Reactome)
Collagen type II fibril R-HSA-1474209 (Reactome)
Collagen type III fibre R-HSA-2214307 (Reactome)
Collagen type III fibril R-HSA-1474212 (Reactome)
Collagen type IV

networks with sulfilimine

cross-links
ComplexR-HSA-2682378 (Reactome)
Collagen type IV alpha1.alpha1.alpha2 network R-HSA-2214294 (Reactome)
Collagen type IV alpha1.alpha2.alpha5.alpha6 network R-HSA-2564665 (Reactome)
Collagen type IV alpha3.alpha4.alpha5 network R-HSA-2564669 (Reactome)
Collagen type IXComplexR-HSA-2142899 (Reactome)
Collagen type V fibre R-HSA-2214302 (Reactome)
Collagen type VI network R-HSA-2214296 (Reactome)
Collagen type VII -NC2 hexamerComplexR-HSA-2214316 (Reactome)
Collagen type VII NC2 proteinasesComplexR-HSA-2214322 (Reactome)
Collagen type VII fibril:Laminin-332ComplexR-HSA-2220790 (Reactome)
Collagen type VII fibrilR-HSA-2214333 (Reactome)
Collagen type VII hexamerComplexR-HSA-2127449 (Reactome)
Collagen type VII fibril R-HSA-2214333 (Reactome)
Collagen type VIII network R-HSA-2214297 (Reactome)
Collagen type X networkR-HSA-2214298 (Reactome)
Collagen type X network R-HSA-2214298 (Reactome)
Collagen type X:type II fibrilsComplexR-HSA-2220791 (Reactome)
Collagen type XI

fibril:Collagen

type II fibril
ComplexR-HSA-2413074 (Reactome)
Collagen type XI fibrilR-HSA-2168008 (Reactome)
Collagen type XI fibre R-HSA-2214303 (Reactome)
Collagen type XI fibril R-HSA-2168008 (Reactome)
Collagen type XII fibril R-HSA-8944209 (Reactome)
Collagen type XII, XIV fibrilsComplexR-HSA-2220797 (Reactome)
Collagen type XIV R-HSA-8944207 (Reactome)
Collagen type XVII

fibril:Integrin

alpha6beta4
ComplexR-HSA-2220788 (Reactome)
Collagen type XVII fibril R-HSA-2172656 (Reactome)
Collagen type XVIIIComplexR-HSA-2152295 (Reactome)
Collagen type XVComplexR-HSA-2168060 (Reactome)
Collagen type XXIV fibre R-HSA-2214306 (Reactome)
Collagen type XXIV fibril R-HSA-2193154 (Reactome)
Collagen type XXVII fibre R-HSA-2214301 (Reactome)
Collagen type XXVII fibril R-HSA-2193157 (Reactome)
Cu2+ MetaboliteCHEBI:29036 (ChEBI)
DST-3 ProteinQ03001-3 (Uniprot-TrEMBL)
Endostatin releasing proteasesComplexR-HSA-2228675 (Reactome)
GalHyl-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
GalHyl-COL15A1(28-1388) ProteinP39059 (Uniprot-TrEMBL)
GalHyl-COL18A1(24-1754) ProteinP39060 (Uniprot-TrEMBL)
GalHyl-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
GalHyl-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
GalHyl-COL24A1(?-?) ProteinQ17RW2 (Uniprot-TrEMBL)
GalHyl-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
GalHyl-COL2A1(182-1241) ProteinP02458 (Uniprot-TrEMBL)
GalHyl-COL3A1 ProteinP02461 (Uniprot-TrEMBL)
GalHyl-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
GalHyl-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
GalHyl-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
GalHyl-COL7A1(17-2821) ProteinQ02388 (Uniprot-TrEMBL)
GalHyl-COL7A1(2822-2944) ProteinQ02388 (Uniprot-TrEMBL)
GalHyl-COL8A1(28-744) ProteinP27658 (Uniprot-TrEMBL)
GalHyl-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
GalHyl-COL9A1 ProteinP20849 (Uniprot-TrEMBL)
GalHyl-COL9A2 ProteinQ14055 (Uniprot-TrEMBL)
GalHyl-COL9A3 ProteinQ14050 (Uniprot-TrEMBL)
GlcGalHyl-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
GlcGalHyl-COL15A1(28-1388) ProteinP39059 (Uniprot-TrEMBL)
GlcGalHyl-COL18A1(24-1754) ProteinP39060 (Uniprot-TrEMBL)
GlcGalHyl-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
GlcGalHyl-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
GlcGalHyl-COL24A1(?-?) ProteinQ17RW2 (Uniprot-TrEMBL)
GlcGalHyl-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
GlcGalHyl-COL2A1(182-1241) ProteinP02458 (Uniprot-TrEMBL)
GlcGalHyl-COL3A1(154-1241) ProteinP02461 (Uniprot-TrEMBL)
GlcGalHyl-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
GlcGalHyl-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
GlcGalHyl-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
GlcGalHyl-COL7A1(17-2821) ProteinQ02388 (Uniprot-TrEMBL)
GlcGalHyl-COL7A1(2822-2944) ProteinQ02388 (Uniprot-TrEMBL)
GlcGalHyl-COL8A1(28-744) ProteinP27658 (Uniprot-TrEMBL)
GlcGalHyl-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
GlcGalHyl-COL9A1 ProteinP20849 (Uniprot-TrEMBL)
GlcGalHyl-COL9A2 ProteinQ14055 (Uniprot-TrEMBL)
GlcGalHyl-COL9A3 ProteinQ14050 (Uniprot-TrEMBL)
Glu-Gal-Hyl collagen alpha-2(XI) chain ProteinP13942 (Uniprot-TrEMBL)
Glu-Gal-Hyl-collagen alpha-1(XI) chain ProteinP12107 (Uniprot-TrEMBL)
H2O2MetaboliteCHEBI:16240 (ChEBI)
H2OMetaboliteCHEBI:15377 (ChEBI)
ITGA6(24-1130) ProteinP23229 (Uniprot-TrEMBL)
ITGB4 ProteinP16144 (Uniprot-TrEMBL)
LAMA3 ProteinQ16787 (Uniprot-TrEMBL)
LAMB3 ProteinQ13751 (Uniprot-TrEMBL)
LAMC2 ProteinQ13753 (Uniprot-TrEMBL)
LOX ProteinP28300 (Uniprot-TrEMBL)
LOX(22-168) ProteinP28300 (Uniprot-TrEMBL)
LOX(22-417) ProteinP28300 (Uniprot-TrEMBL)
LOXL1 ProteinQ08397 (Uniprot-TrEMBL)
LOXL1(26-574) ProteinQ08397 (Uniprot-TrEMBL)
LOXL1(26-94) ProteinQ08397 (Uniprot-TrEMBL)
LOXL2 ProteinQ9Y4K0 (Uniprot-TrEMBL)
LOXL2(26-?) ProteinQ9Y4K0 (Uniprot-TrEMBL)
LOXL2(?-774) ProteinQ9Y4K0 (Uniprot-TrEMBL)
LOXL3 ProteinP58215 (Uniprot-TrEMBL)
LOXL3(26-?) ProteinP58215 (Uniprot-TrEMBL)
LOXL3(?-753) ProteinP58215 (Uniprot-TrEMBL)
LOXL4 ProteinQ96JB6 (Uniprot-TrEMBL)
LOXL4(25-?) ProteinQ96JB6 (Uniprot-TrEMBL)
LOXL4(?-756) ProteinQ96JB6 (Uniprot-TrEMBL)
Laminin-332ComplexR-HSA-216001 (Reactome)
Lysyl oxidase propeptidesComplexR-HSA-2022080 (Reactome)
Lysyl oxidases:Cu2+ComplexR-HSA-2022132 (Reactome)
Lysyl oxidasesComplexR-HSA-2022119 (Reactome)
MMP13 ProteinP45452 (Uniprot-TrEMBL)
MMP20 ProteinO60882 (Uniprot-TrEMBL)
MMP3(100-477) ProteinP08254 (Uniprot-TrEMBL)
MMP7(95-267) ProteinP09237 (Uniprot-TrEMBL)
MMP9(107-707) ProteinP14780 (Uniprot-TrEMBL)
NH3MetaboliteCHEBI:16134 (ChEBI)
Network forming tropocollagensComplexR-HSA-2213198 (Reactome)
O2MetaboliteCHEBI:15379 (ChEBI)
PCOLCE ProteinQ15113 (Uniprot-TrEMBL)
PLEC ProteinQ15149 (Uniprot-TrEMBL)
PXDN ProteinQ92626 (Uniprot-TrEMBL)
PXDN:Br-ComplexR-HSA-8959982 (Reactome)
Procollagen C-proteinasesComplexR-HSA-2002397 (Reactome)
Prolysyl oxidasesComplexR-HSA-2022092 (Reactome)
Sulfilimine-containing collagen type IV alpha1.alpha1.alpha2 network R-HSA-2682389 (Reactome)
Sulfilimine-containing collagen type IV alpha1.alpha2.alpha5.alpha6 network R-HSA-2682390 (Reactome)
Sulfilimine-containing collagen type IV alpha3.alpha4.alpha5 network R-HSA-2682403 (Reactome)
TLL1 ProteinO43897 (Uniprot-TrEMBL)
TLL2 ProteinQ9Y6L7 (Uniprot-TrEMBL)
Tropocollagen type IV R-HSA-2127389 (Reactome)
Tropocollagen type V R-HSA-2127422 (Reactome)
TropocollagensComplexR-HSA-2060921 (Reactome)
Type I hemidesmosome complexComplexR-HSA-2220800 (Reactome)

Annotated Interactions

View all...
SourceTargetTypeDatabase referenceComment
Anchoring fibril complexArrowR-HSA-2396234 (Reactome)
BPAG1e:PlectinR-HSA-2213192 (Reactome)
CD151R-HSA-2213192 (Reactome)
COL15A1(1212-1388)ArrowR-HSA-2213200 (Reactome)
COL15A1(?-1211)ArrowR-HSA-2213200 (Reactome)
COL18A1(1572-11754)ArrowR-HSA-2213200 (Reactome)
COL18A1(?-1571)ArrowR-HSA-2213200 (Reactome)
Collagen

alpha-1(VII) NC2

region
ArrowR-HSA-2214330 (Reactome)
Collagen alpha-1(VII) trimerR-HSA-2214324 (Reactome)
Collagen

type 1 fibrils cross-linked by

dehydro-lysinonorleucine crosslinks
ArrowR-HSA-2243931 (Reactome)
Collagen

type I fibrils with

histidino-hydroxylysinoleucine cross-links
ArrowR-HSA-2243926 (Reactome)
Collagen

type I fibrils with

hydroxylysino-5-ketonorleucine crosslinks
ArrowR-HSA-2395302 (Reactome)
Collagen

type I fibrils with

hydroxylysino-5-ketonorleucine crosslinks
R-HSA-2395223 (Reactome)
Collagen

type I fibrils with

hydroxylysino-5-ketonorleucine crosslinks
R-HSA-2395322 (Reactome)
Collagen

type I fibrils with

hydroxylysino-5-ketonorleucine crosslinks
R-HSA-2395324 (Reactome)
Collagen

type I fibrils with

hydroxylysyl-pyridinoline cross-links
ArrowR-HSA-2395223 (Reactome)
Collagen

type I fibrils with

hydroxylysyl-pyrrole cross-links
ArrowR-HSA-2395324 (Reactome)
Collagen

type I fibrils with

lysino-5-ketonorleucine cross-links
ArrowR-HSA-2395314 (Reactome)
Collagen

type I fibrils with

lysino-5-ketonorleucine cross-links
R-HSA-2250301 (Reactome)
Collagen

type I fibrils with

lysino-5-ketonorleucine cross-links
R-HSA-2395322 (Reactome)
Collagen IVR-HSA-2396234 (Reactome)
Collagen IVR-HSA-2559639 (Reactome)
Collagen fibresArrowR-HSA-2213201 (Reactome)
Collagen fibrilsArrowR-HSA-1474266 (Reactome)
Collagen fibrilsR-HSA-2213201 (Reactome)
Collagen networksArrowR-HSA-2213207 (Reactome)
Collagen type

I,II:XII,XIV

fibrils
ArrowR-HSA-2213205 (Reactome)
Collagen type I

fibril with

allysines
ArrowR-HSA-2002466 (Reactome)
Collagen type I

fibril with

allysines
R-HSA-2243931 (Reactome)
Collagen type I

fibril with

allysines
R-HSA-2395257 (Reactome)
Collagen type I

fibril with

hydroxyallysines
ArrowR-HSA-2395340 (Reactome)
Collagen type I

fibril with

hydroxyallysines
R-HSA-2395302 (Reactome)
Collagen type I

fibril with

hydroxyallysines
R-HSA-2395314 (Reactome)
Collagen type I

fibril with free

hydroxylysines
R-HSA-2395340 (Reactome)
Collagen type I fibrilR-HSA-2002466 (Reactome)
Collagen type I fibrilR-HSA-2243926 (Reactome)
Collagen type I fibrilR-HSA-2243931 (Reactome)
Collagen type I fibrilR-HSA-2395257 (Reactome)
Collagen type I fibrilR-HSA-2395302 (Reactome)
Collagen type I fibrilR-HSA-2395314 (Reactome)
Collagen type I fibrilR-HSA-2395340 (Reactome)
Collagen type I fibrilR-HSA-2396234 (Reactome)
Collagen type I

fibrils with deH-HLNL

cross-links
ArrowR-HSA-2395257 (Reactome)
Collagen type I

fibrils with deH-HLNL

cross-links
R-HSA-2243926 (Reactome)
Collagen type I

fibrils with deH-HLNL

cross-links
R-HSA-2250301 (Reactome)
Collagen type I

fibrils with deH-HLNL

cross-links
R-HSA-2395324 (Reactome)
Collagen type I

fibrils with lysyl-pyridinoline

cross-links
ArrowR-HSA-2395322 (Reactome)
Collagen type I

fibrils with lysyl-pyrrole

cross-links
ArrowR-HSA-2250301 (Reactome)
Collagen type I, II fibrilsR-HSA-2213205 (Reactome)
Collagen type II

fibril:Collagen

type IX
ArrowR-HSA-2213210 (Reactome)
Collagen type II fibrilR-HSA-2213208 (Reactome)
Collagen type II fibrilR-HSA-2213210 (Reactome)
Collagen type II fibrilR-HSA-2299620 (Reactome)
Collagen type IV

networks with sulfilimine

cross-links
ArrowR-HSA-2559639 (Reactome)
Collagen type IXR-HSA-2213210 (Reactome)
Collagen type VII -NC2 hexamerArrowR-HSA-2214330 (Reactome)
Collagen type VII -NC2 hexamerR-HSA-2213195 (Reactome)
Collagen type VII NC2 proteinasesmim-catalysisR-HSA-2214330 (Reactome)
Collagen type VII fibril:Laminin-332R-HSA-2213192 (Reactome)
Collagen type VII fibrilArrowR-HSA-2213195 (Reactome)
Collagen type VII fibrilR-HSA-2396234 (Reactome)
Collagen type VII hexamerArrowR-HSA-2214324 (Reactome)
Collagen type VII hexamerR-HSA-2214330 (Reactome)
Collagen type X networkR-HSA-2213208 (Reactome)
Collagen type X:type II fibrilsArrowR-HSA-2213208 (Reactome)
Collagen type XI

fibril:Collagen

type II fibril
ArrowR-HSA-2299620 (Reactome)
Collagen type XI fibrilR-HSA-2299620 (Reactome)
Collagen type XII, XIV fibrilsR-HSA-2213205 (Reactome)
Collagen type XVII

fibril:Integrin

alpha6beta4
R-HSA-2213192 (Reactome)
Collagen type XVIIIR-HSA-2213200 (Reactome)
Collagen type XVR-HSA-2213200 (Reactome)
Endostatin releasing proteasesmim-catalysisR-HSA-2213200 (Reactome)
H2O2ArrowR-HSA-2002466 (Reactome)
H2O2ArrowR-HSA-2395340 (Reactome)
H2O2R-HSA-2559639 (Reactome)
H2OR-HSA-2002466 (Reactome)
H2OR-HSA-2395340 (Reactome)
Laminin-332R-HSA-2396234 (Reactome)
Lysyl oxidase propeptidesArrowR-HSA-2022141 (Reactome)
Lysyl oxidases:Cu2+mim-catalysisR-HSA-2002466 (Reactome)
Lysyl oxidases:Cu2+mim-catalysisR-HSA-2395340 (Reactome)
Lysyl oxidasesArrowR-HSA-2022141 (Reactome)
NH3ArrowR-HSA-2002466 (Reactome)
NH3ArrowR-HSA-2395340 (Reactome)
Network forming tropocollagensR-HSA-2213207 (Reactome)
O2R-HSA-2002466 (Reactome)
O2R-HSA-2395340 (Reactome)
PXDN:Br-mim-catalysisR-HSA-2559639 (Reactome)
Procollagen C-proteinasesmim-catalysisR-HSA-2022141 (Reactome)
Prolysyl oxidasesR-HSA-2022141 (Reactome)
R-HSA-1474266 (Reactome) Collagen fibrils are the principal tensile element of the extracellular matrix in a wide range of animal connective tissues. They have a 67 nm axial periodicity in most tissues, 65 nm in vertebrate skin, and are near-circular in transverse section. Fibril diameter depends both on tissue type and stage of development, covering a range of 20-500 nm in vertebrates. Fibril length is less well characterised but fibrils with lengths in the range 1-100 micrometres have been isolated.

Fibril formation is spontaneous (Fallas et al. 2010, Birk & Brückner 2011), but influenced by developmental state and the cellular environment. Several models have been proposed including the simple surface nucleation and propagation (SNAP) model (Trotter et al. 2000) but the mechanism of fibril assembly and regulation of fibril diameter and length are not completely understood (Holmes et al. 2001, Banos et al. 2008). Fibrils frequently contain more than one type of collagen, and the outer surface of fibrils frequently interacts with proteoglycans, fine-tuning its structural and signaling properties (Wess 2005, Kalamajski & Oldberg 2010, Ricard-Blum et al. 2011).

Individual fibril-forming collagen molecules are around 300nm in length. Complete fibrils exhibit a 67 nm periodicity, seen with many different imaging methods. This is due to a staggered overlap of molecules which leads to regions where fewer molecules overlap with a periodicity of 67 nm (Hodge & Petruska 1963, Wess 2005). Laterally, molecules are believed to be packed into a quasi-hexagonal structure (Trus & Piez 1980) resulting in locally ordered crystalline regions interspersed with disordered regions across the lateral plane of the fibril (Hulmes 2002). Interactions between molecules stabilize the fibril, including the formation of divalent and subsequently trivalent crosslinks, unique to collagen, that involve lysine or hydroxylysine residues.
R-HSA-2002466 (Reactome) Lysine residues can be converted to allysine by lysyl oxidase. In this representative reaction a single lysine residue in each collagen chain is shown as converted to allysine (Pinnell et al. 1968).
R-HSA-2022141 (Reactome) Lysyl oxidase (LOX) is secreted to the extracellular space in an inactive, proenzyme form (proLOX). This is proteolytically cleaved between Gly168 and Asp169 generating the mature 32-kDa enzyme. The activating proteinase is Bone morphogenetic protein 1 (BMP1), also called Procollagen C-proteinase (Cronshaw et al. 1995, Panchenko et al. 1996). Other extracellular proteases, including the BMP1 variant mammalian tolloid, tolloid-like (TLL) 1 and TLL2 proteases cleave proLOX at the correct physiological site but with lower efficiency (Uzel et al. 2001).
R-HSA-2213192 (Reactome) Type XVII collagen is a component of hemidesmosomes (HDs) (Has & Kern 2010). It associates with integrin alpha6beta4 (a6b4) (Hopkinson et al. 1999). The extracellular region of a6b4 extends from the cell membrane into the basement membrane to bind laminins, with a preference for laminin-332 (Hopkinson & Jones 2000, Sugawara et al. 2008), which is a component of anchoring fibrils. Laminins are complex glycoproteins, consisting of alpha, beta and gamma chains bound into a cross-shaped molecule. Laminin-332 is a complex of alpha-3, beta-2 and gamma-2 subunits. The cytoplasmic domain of integrin beta-4 interacts with other hemidesmosomal components, plectrin and BPAG1. The interaction of a6b4 and plectrin is likely to be the initial step in HD formation (de Pereda et al. 2009). The cytoplasmic domain of collagen type XVII (BP180) binds to integrin beta-4, plectin and BPAG1 (Hopkinson & Jones 2000, Koster et al. 2003). The transmembrane protein CD151 (tetraspanin-24) associates with a6b4 (Sterk et al. 2002) and is essential for the correct assembly of basement membranes in human kidney and skin, possibly having a role in integrin alpha-3 maturation and cell surface expression (Karamatic Crew et al. 2003).
R-HSA-2213195 (Reactome) Collagen VII forms anchoring fibrils, composed of antiparallel dimers that connect the dermis to the epidermis (Bruckner-Tuderman 2009). During fibrillogenesis, the nascent type VII procollagen molecules dimerize in an antiparallel manner. The C-propeptides are then removed by bone morphogenetic protein 1 (Rattenholl et al. 2002) and the processed antiparallel dimers laterally aggregate (Gordon & Hahn 2010).
R-HSA-2213200 (Reactome) Collagens XV and XVIII are basement membrane associated collagens that can be cleaved to generate the antiangiogenic peptides restin (endostatin-XV) and endostatin (endostatin-XVIII), respectively (O'Reilly et al. 1997, Ramachandran et al. 1997, Sasaki et al. 2000). Endostatin fragments of differing molecular size (14-30 kDa) have been identified in vivo. Furthermore the C-terminal domains of several other collagens (IV, VIII, XIX) have anti-angiogenic and anti-tumoral activities (Ricard-Blum & Ballut 2011). Several proteases are able to generate endostatin from collagen XVIII including MMP-3, -7, -9, -13 and -20 and cathepsins B, V, S and L (Heljasvaara et al. 2005, Ma et al. 2007, Veillard et al. 2011). Endostatin inhibits proliferation of endothelial cells, angiogenesis and tumor growth in vivo (O'Reilly et al. 1997).
R-HSA-2213201 (Reactome) Fibrils are components of larger suprafibrillar structures, fibres. The organisation of fibrils varies between tissues; in the cornea fibrils are arranged in parallel within layers but layers have different orientations. In articular cartilage, fibrils are arranged in mostly parallel layers (Wess 2005). Interactions between fibrils are thought to be largely mediated by surface-associated macromolecules, such as anionic glycosaminoglycans (GAGs) and small leucine-rich proteoglycans such as decorin.
R-HSA-2213205 (Reactome) Certain fibril-associated collagens with interrupted triple helices (FACITs) associate with the surface of collagen fibrils, where they may serve to limit fibril fusion and thereby regulate fibril diameter (Ansorge et al. 2009, Gordon & Hahn 2010). Type XII and XIV colalgens are found in association with type I (Walchli et al. 1994) and type II (Watt et al. 1992, Eyre 2002).
R-HSA-2213207 (Reactome) Collagens IV, VI, VIII and X form open networks. Type IV networks are irregular. Type VIII and X form hexagonal networks. Type VI collagen forms tetramers which aggregate linearly to form beaded filaments, but also associates laterally through the globular domains so forming a network (Baldock et al. 2003, Knupp et al. 2006, ). Type IV collagen is the predominant collagen type in basement membranes (Parkin et al. 2011). It assembles into three distinct networks with differing combinations of alpha chains, namely alpha1.alpha1.alpha2, alpha3.alpha4.alpha5 and alpha1.alpha2.alpha5.alpha6, (Siebold et al. 1988, Gunwar et al. 1998, Borza et al. 2001), the last of these forms through the association of alpha5.alpha5.alpha6 triple-helical protomers and alpha1.alpha1.alpha2 protomers, interacting tail-to-tail at the retained NC1 domains. Further associations are formed by tetramerization of the 7S domain at the N terminus (Timpl et al. 1981, Siebold et al. 1987). These interactions are the most significant for network formation, but a third interaction occurs whereby type IV collagen dimers interact through lateral association (Yurchenco & Furthmayr 1984, Yurchenco & Ruben 1987, Yurchenko & Patton 2009). Collagen type VI forms tetramers and subsequently several types of higher-order structure (Ball et al. 2001, Beecher et al. 2011) that are probably influenced by the association of other matrix constituents such as hyaluronan (Kielty et al. 1992), fibrillin (Ueda & Yue 2003), biglycan and decorin (Wiberg et al. 2001).

Type VIII collagen forms a hexagonal lattice in Descemet's membrane (Shuttleworth 1997). These are thought to be derived from tetrahedral structures that form when 4 type VIII molecules associate via hydrophobic patches on their C-termini, which then associate via their N-terminals (Stephan et al. 2004). Type X collagen is very similar to type VIII and in vitro forms hexagonal arrays, believed to arise from interactions of the globular domains (Kwan et al. 1991, Jacenko et al. 2001). In vivo type X collagen is found associated with cartilage fibrils in the form of fine filaments (Schmidt & Linsenmayer 1990), which may represent hexagonal lattices that have collapsed during sample preparation (Gordon & Hahn 2010).
R-HSA-2213208 (Reactome) In vivo type X collagen is found associated with cartilage fibrils in the form of fine filaments (Schmidt & Linsenmayer 1990), which may represent hexagonal lattices that have collapsed during sample preparation (Gordon & Hahn 2010).
R-HSA-2213210 (Reactome) Certain fibril-associated collagens with interrupted triple helices (FACITs) associate with the surface of collagen fibrils, where they may serve to limit fibril fusion and thereby regulate fibril diameter (Gordon & Hahn 2010, Ricard-Blum et al. 2011). Collagen IX cross-linked to the surface of collagen type II fibrils is thought to both regulate fibril diameter and stabilize interfibrillar connections (Eyre et al. 2004). An alternative model suggests that collagen II and XI form a biological alloy (Blaschke et al. 2000).
R-HSA-2214324 (Reactome) Collagen VII triple-helices form an anti-parallel dimer, associating through disulfide bonds formed in a 60-nm overlap (NC2 domain) of the amino terminal triple helical ends. A portion of this region is proteolytically removed (Morris et al. 1986, Chen et al. 2001) prior to aggregation of dimers into anchoring fibrils (Lundstrum et al. 1986).
R-HSA-2214330 (Reactome) Bone morphogenetic protein-1 (BMP1) cleaves the C-terminal propeptide from human procollagen VII within the NC2 domain at the BMP1 consensus cleavage site SYAA|DTAG. Mammalian tolloid-like (mTLL)-1 and -2 can substitute for BMP1 (Ratttenholl et al. 2002).
R-HSA-2243926 (Reactome) Histidino-hydroxylysinonorleucine (HHL) cross-links, formed when deH-HLNL reacts with a histidine residue, have been identified in skin and cornea (Yamauchi et al. 1987, 1996, Okada et al. 1997).
R-HSA-2243931 (Reactome) Allysine residues can condense with lysine residues forming dehydro-lysinonorleucine (deH-LNL) cross-links. In this representative reaction, all allysine residues are shown as converted to deH-LNL though partial conversion, or conversion to other cross-linked forms is possible (Reiser et al. 1992, Bailey & Peach 1968).
R-HSA-2250301 (Reactome) Trivalent collagen cross-links can also form as pyrroles. Lysyl-Pyrrole (L-Pyrrole) is formed when Lysino-ketonorleucine (LKNL) reacts with Hydroxylysino-norleucine (deH-HLNL) (Eyre et al. 2008), with structures based on a 3-hydroxypyrrole, believed to be the core structure of the pyrrole cross-links in bone collagen, rather than a pyrrole lacking a hydroxyl on the ring as depicted earlier.
R-HSA-2299620 (Reactome) Type XI collagen molecules are cross-linked by lysyl oxidase-mediated bonds (Wu & Eyre 1995) primarily in a head-to-tail manner (Eyre et al. 2006). Homopolymers of type XI collagen can form in vitro (Bruckner & van der Rest 1994, Blaschke et al. 2000). Type XI collagen molecules can cross-link with type II collagen forming heterofibrils (Eyre & Wu 2004, 2005).
R-HSA-2395223 (Reactome) Hydroxylysyl-pyridinoline (HL-Pyr) is formed from three hydroxylysine residues, (HLKNL plus a further hydroxyallysine donated by a second HLKNL). It predominates in highly hydroxylated collagens such as type II collagen in cartilage.
R-HSA-2395257 (Reactome) Allysine residues condense with hydroxylysine residues to form the aldimine dehydro-hydroxylysino-norleucine (deH-HLNL), first identified by Bailey & Peach (1968).
R-HSA-2395302 (Reactome) Hydroxyallysine and hydroxylysine can react forming the Schiff base, which spontaneously undergoes an Amadori rearrangement resulting in the ketoimine cross-link hydroxylysino-5-ketonorleucine (HLKNL). This is much more stable than the aldimine crosslinks (Bailey et al. 1998).
R-HSA-2395314 (Reactome) In bone, cross-links are formed between telopeptide hydroxallysine residues and helical lysines (Robins & Bailey 1975). The resulting Schiff base undergoes Amadori rearrangement to form lysino-5-ketonorleucine (LKNL).
R-HSA-2395322 (Reactome) Lysyl-pyridinoline (L-Pyr) cross-links are formed from two hydroxylysine residues and a lysine residue (LKNL plus a further hydroxyallysine contributed by HLKNL), found mostly in calcified tissues (Bailey et al. 1998).
R-HSA-2395324 (Reactome) Trivalent collagen cross-links can form as pyrroles. Hydroxylysyl-Pyrrole (HL-Pyrrole) is formed when Hydroxylysino-ketonorleucine (HLKNL) reacts with hydroxylysino-norleucine (deH-HLNL) (Eyre et al. 2008). The mechanism of pyrrole cross-links has been revised to a structure based on 3-hydroxypyrrole, rather than a pyrrole lacking a hydroxyl on the ring as depicted earlier (Bailey et al. 1998).
R-HSA-2395340 (Reactome) Hydroxylysines residues can be converted to hydroxyallysines by lysyl oxidase. In this representative reaction a single hydroxylysine residue in each collagen chain is shown as converted to hydroxyallysine (Pinnell et al. 1968, Siegel 1979).
R-HSA-2396234 (Reactome) Anchoring fibrils are structures in skin that consist largely of collagen VII. They extend from the epidermal basement membrane to the dermal stroma where they connect with reticular fibre bundles, largely composed of collagen III (Fleischmajer et al. 1980). The long loop region of collagen VII entraps fibrillar collagens in the papillary dermis (Burgeson 1993). Type VII collagen binds laminin-332 (laminin-5) through the beta3 short arm, and also binds both type IV collagen and interstitial banded collagen fibrils - represented here by their major constituent, collagen I (Nakishima et al. 2005, Brittingham et al. 2006, Villone et al. 2008). Mutations of collagen VII are a cause of dystrophic epidermolysis bullosa, a blistering skin disease where separation occurs in the dermis at the level of anchoring fibrils (Chung & Uitto 2010, Uitto et al. 2010).
R-HSA-2559639 (Reactome) A recently discovered sulfilimine (S=N) bond between a methionine sulfur and hydroxylysine nitrogen reinforces the collagen IV network (Vanacore et al. 2005, 2009). Peroxidasin, an enzyme found in basement membranes, indirectly catalyzes formation of the sulfilimine bond by producing the reactive intermediates hypobromous acid from peroxide and free Br- (Bhave 2012, MacCall et al. 2014).
TropocollagensR-HSA-1474266 (Reactome)
Type I hemidesmosome complexArrowR-HSA-2213192 (Reactome)
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