Programmed cell death and cell engulfment (Caenorhabditis elegans)

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1, 2SPECIFICATION PHASENucleusCell targetted for deathHSN NEURONIntegrins?CRN-4CPS-6CRN-1WAH-1CYP-13CRN-5CED-12EOR-2TRA-1CED-4CED-9CED-10/Rac1CED-5/DOCK180Engulfing CellEOR-1CES-1HLH-2CES-2HLH-3NSM SISTER CELLSEGL-1CED-9?CED-6CED-1/SREC??CED-2/CrkIIactinpolymerizationActive CED-3ProteaseCED-3?CED-7CED-7/ABC1PSR-1?CED-41EGL-11CED-4CED-3NucleusKILLING PHASEEXECUTION PHASE:Corpse engulfmentEXECUTION PHASE:DNA degradationNUC-1CRN-6CRN-2CRN-3?


Description

Programmed cell death (PCD), or apoptosis, is an integral component of C. elegans development. During development, 131 cells are fated to die by apoptosis. PCD is easily observed with Nomarski optics in the C. elegans embryo; the nucleus of the apoptotic cell becomes refractile, resembling a flat button, making C. elegans an easy model for following apoptotic cell death. PCD in C. elegans can be divided into three main phases (with participating genes): specification of which cells should live or die (ces-1, ces-2, in general); activation of the cell killing machinery (egl-1, ced-9, ced-4 and ced-3); and an execution phase where the dying cell is dismantled and removed through phagocytosis (ced-1,-2,-5,-6,-7,-10 and-12), which occurs in concert with apoptotic DNA degradation (cps-6, nuc-1). Molecular and biochemical studies in C. elegans revealed programmed cell death mechanisms conserved in humans. The regulatory pathway that controls cell death is composed of conserved cell death activators and inhibitors: EGL-1 and BH3-domain-only proteins, CED-9 and Bcl-2, CED-4 and Apaf-1, and CED-3 and caspases, in nematodes and mammals, respectively. Further the degradation of chromosomal DNA involves a mitochondrial proapoptotic endonuclease: endonuclease G (EndoG), and AIF in mammals and their orthologs CPS-6 and WAH-1 in worms.

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Bibliography

  1. Conradt B, Xue D; ''Programmed cell death.''; WormBook, 2005 PubMed Europe PMC Scholia
  2. Gumienny TL, Hengartner MO; ''How the worm removes corpses: the nematode C. elegans as a model system to study engulfment.''; Cell Death Differ, 2001 PubMed Europe PMC Scholia

History

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CompareRevisionActionTimeUserComment
118448view14:52, 27 May 2021RaatsSfix unconnected lines
118182view10:50, 25 May 2021EweitzModified title
89460view13:12, 15 September 2016Mkutmonremove space in ontology term id
78458view10:27, 7 January 2015MaintBotadded missing graphIds
77267view22:33, 11 August 2014KyookFinished incorporating genes from Fig 1 Conradt
77240view23:43, 7 August 2014Kyookfixed specification relationships based on fig 2 of Conradt's WB chapter
76505view00:53, 15 July 2014Kyookreposition regulators of EGL-1
76502view00:04, 15 July 2014KyookOntology Term : 'apoptosis fated cell' added !
76501view00:04, 15 July 2014KyookOntology Term : 'apoptotic cell death pathway' added !
76500view00:02, 15 July 2014KyookModified description
76298view21:51, 27 June 2014KyookNew pathway

External references

DataNodes

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NameTypeDatabase referenceComment
Active CED-3 ProteaseGeneProductC48D1.2 (WormBase)
CED-1/SREC?GeneProductY47H9C.4 (WormBase)
CED-10/Rac1GeneProductC09G12.8 (WormBase)
CED-12GeneProductY106G6E.5 (WormBase)
CED-2/CrkIIGeneProductY41D4B.13 (WormBase)
CED-3GeneProductC48D1.2 (WormBase)
CED-4GeneProductC35D10.9 (WormBase)
CED-5/DOCK180GeneProductC02F4.1 (WormBase)
CED-6GeneProductF56D2.7 (WormBase)
CED-7/ABC1GeneProductC48B4.4 (WormBase)
CED-7GeneProductC48B4.4 (WormBase)
CED-9GeneProductT07C4.8 (WormBase)
CES-1GeneProductF43G9.11 (WormBase)
CES-2GeneProductZK909.4 (WormBase)
CPS-6GeneProductC41D11.8 (WormBase)
CRN-1GeneProductY47G6A.8 (WormBase)
CRN-2GeneProductCD4.2 (WormBase)
CRN-3GeneProductC14A4.4 (WormBase)
CRN-4GeneProductAH9.2 (WormBase)
CRN-5GeneProductC14A4.5 (WormBase)
CRN-6GeneProductK04H4.6 (WormBase)
CYP-13GeneProductT10B9.8 (WormBase)
EGL-1GeneProductF23B12.9 (WormBase)
EOR-1GeneProductR11E3.6 (WormBase)
EOR-2GeneProductC44H4.7 (WormBase)
HLH-2GeneProductM05B5.5 (WormBase)
HLH-3GeneProductT24B8.6 (WormBase)
NUC-1GeneProductC07B5.5 (WormBase)
PSR-1?GeneProductF29B9.4 (WormBase)
TRA-1GeneProductY47D3A.6 (WormBase)
WAH-1GeneProductY56A3A.32 (WormBase)

Annotated Interactions

No annotated interactions

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