Calvin cycle (Populus trichocarpa)

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1RuBisCO activasecarbonic anhydraseglyceraldehyde-3-phosphate dehydrogenasesedoheptulose-1,7-bisphosphataseribulose-5-phosphate-3-epimerasecarbonic acidfructose-1,6-bisphosphatefructose-6-phosphatetransketolasephosphoglycerate kinasexylulose-5-phosphateerythrose-4-phosphateRuBisCOcarbon dioxidephosphoribulokinasesedoheptulose-1,7-bisphosphatedihydroxy-acetone phosphatefructose-1,6-bisphosphataseRuBisCO subunit binding3-phosphoglycerateglyceraldehyde-3-phosphateribose-5-phosphatealdolaseribulose-1,5-bisphosphateribulose-5-phosphateCHOLOROPLAST1,3-bisphosphoglyceratetransketolasealdolasesedoheptulose-7-phosphateribulose-5-phosphate epimeraseADPATPNADP+NADPHADPATP


Description

This plant pathway represents the Calvin cycle (chloroplast). The primary site of CO2 fixation in C3 plants. CO2 is fixated onto ribulose-1,5-bishosphate to produce 3-phosphoglycerate. Part of the 3-phosphoglycerate is exported to the glycolysis (WP2862) while the rest is regenerated into ribulose-1,5-bisphosphate. The process uses NADPH and ATP that have been generated by the photosynthetic electon transport chain (WP2861).

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Ontology Terms

 

Bibliography

  1. Bohler S, Sergeant K, Lefèvre I, Jolivet Y, Hoffmann L, Renaut J, Dizengremel P, Hausman JF; ''Differential impact of chronic ozone exposure on expanding and fully expanded poplar leaves.''; Tree Physiol, 2010 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
102771view21:10, 23 January 2019EgonwFixed the casing of two ChEBI identifiers (prefix should be CHEBI: instead of ChEBI:)
86996view14:39, 15 July 2016MkutmonOntology Term : 'photosynthesis pathway' added !
78143view13:17, 5 December 2014AnweshaFixed metabolite annotation
78141view12:58, 5 December 2014AnweshaAnnotated enzymes
78140view12:54, 5 December 2014AnweshaFixed Mmetabolite labels, annotations, and protein annotations
77740view12:59, 16 October 2014SbohlerModified description
77739view12:58, 16 October 2014SbohlerModified description
77731view12:39, 16 October 2014AnweshaAdded literature reference
77724view12:25, 16 October 2014SbohlerModified description
77720view12:16, 16 October 2014AnweshaNew pathway

External references

DataNodes

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NameTypeDatabase referenceComment
1,3-bisphosphoglycerateMetaboliteC00236 (KEGG Compound)
3-phosphoglycerateMetaboliteCHEBI:17050 (ChEBI)
ADPMetaboliteCHEBI:16761 (ChEBI)
ATPMetaboliteCHEBI:15422 (ChEBI)
NADP+MetaboliteCHEBI:18009 (ChEBI)
NADPHMetaboliteCHEBI:16474 (ChEBI)
RuBisCO activaseProteinA9PFQ2 (Uniprot-TrEMBL)
RuBisCO subunit bindingProteinB9HQD5 (Uniprot-TrEMBL)
RuBisCOProteinB9GXY0 (Uniprot-TrEMBL)
aldolaseProteinA9PJC9 (Uniprot-TrEMBL)
carbon dioxideMetaboliteCHEBI:16526 (ChEBI)
carbonic acidMetaboliteCHEBI:28976 (ChEBI)
carbonic anhydraseProteinQ41088 (Uniprot-TrEMBL)
dihydroxy-acetone phosphateMetaboliteCHEBI:16108 (ChEBI)
erythrose-4-phosphateMetaboliteCHEBI:48153 (ChEBI)
fructose-1,6-bisphosphataseProtein3.1.3.11 (Enzyme Nomenclature)
fructose-1,6-bisphosphateMetaboliteCHEBI:32966 (ChEBI)
fructose-6-phosphateMetaboliteCHEBI:78697 (ChEBI)
glyceraldehyde-3-phosphate dehydrogenaseProteinQ9SNX8 (Uniprot-TrEMBL)
glyceraldehyde-3-phosphateMetaboliteCHEBI:17050 (ChEBI)
phosphoglycerate kinaseProteinB9HY29 (Uniprot-TrEMBL)
phosphoribulokinaseProteinB9GZT5 (Uniprot-TrEMBL)
ribose-5-phosphateMetaboliteCHEBI:17050 (ChEBI)
ribulose-1,5-bisphosphateMetaboliteCHEBI:17050 (ChEBI)
ribulose-5-phosphate epimeraseProtein5.3.1.6 (Enzyme Nomenclature)
ribulose-5-phosphate-3-epimeraseProteinA9PIC8 (Uniprot-TrEMBL)
ribulose-5-phosphateMetaboliteCHEBI:17050 (ChEBI)
sedoheptulose-1,7-bisphosphataseProtein3.1.3.37 (Enzyme Nomenclature)
sedoheptulose-1,7-bisphosphateMetaboliteCHEBI:17969 (ChEBI)
sedoheptulose-7-phosphateMetaboliteCHEBI:15721 (ChEBI)
transketolaseProteinB9GPE7 (Uniprot-TrEMBL)
xylulose-5-phosphateMetaboliteCHEBI:16332 (ChEBI)

Annotated Interactions

No annotated interactions

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