Superpathway polyamine biosynthesis (Saccharomyces cerevisiae)

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Description

In S. cerevisiae, the biosynthesis of putrescine, spermidine, and spermine begins with two intermediates from amino acid metabolism: ornithine, an intermediate of arginine biosynthesis and degradation, and S-adenosylmethionine (AdoMet), a metabolite of methionine and a ubiquitous methyl group donor for many biological reactions. At the start of the pathway, ornithine is decarboxylated to putrescine by ornithine decarboxylase (Spe1p) while S-adenosylmethionine decarboxylase (Spe2p) decarboxylates AdoMet. Spermidine synthase (Spe3p) then catalyzes the transfer of an aminopropyl group from decarboxylated AdoMet to putrescine, converting the two substrates to 5-methylthioadenosine (MTA) and spermidine, respectively. In an analogous reaction, spermidine can go on to react with decarboxylated AdoMet via spermine synthase (Spe4p) to yield spermine and another molecule of MTA. Spermidine but not spermine is essential for growth in S. cerevisiae.

MTA, a major byproduct of the polyamine biosynthesis pathway, is also the principal substrate for the methionine salvage pathway. The methionine salvage pathway recycles MTA produced during polyamine biosynthesis or other cellular processes back into methionine. In S. cerevisiae, the polyamine biosynthesis pathway and the methionine salvage pathway together are estimated to account for 11-19% of the methionine used by a methionine auxotroph grown on limiting methionine.

Description adapted from https://pathway.yeastgenome.org/.

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Ontology Terms

 

Bibliography

  1. ''superpathway of polyamine biosynthesis''; YeastPathways,

History

View all...
CompareRevisionActionTimeUserComment
136048view05:13, 10 December 2024KhanspersOntology Term : 'classic metabolic pathway' added !
136047view05:12, 10 December 2024Khanspersdecreased board height
136046view05:12, 10 December 2024KhanspersModified description
136045view05:11, 10 December 2024Khanspersremoved GenMAPP comments, updated reference
136044view05:10, 10 December 2024Khanspersupdated content, added reference
117328view11:48, 20 May 2021EweitzModified title
69849view16:02, 11 July 2013EgonwMarked a few DataNodes with CAS registry numbers as metabolites.
69597view20:31, 8 July 2013MaintBotUpdated to 2013 gpml schema
67599view11:31, 26 June 2013DdiglesOntology Term : 'amines and polyamines metabolic pathway' added !
46438view01:46, 28 January 2012Khanspersremoved problematic characters from labels
46420view18:30, 27 January 2012KhanspersReverted to version '04:49, 2 March 2011' by Khanspers
46419view18:28, 27 January 2012Khanspersfixed corrupted metabolite names
41826view04:49, 2 March 2011MaintBotRemoved redundant pathway information and comments
21291view11:31, 14 November 2008MaintBot[[Pathway:Saccharomyces cerevisiae:Polyamine Biosynthesis]] moved to [[Pathway:WP290]]: Moved to stable identifier
12820view08:04, 17 May 2008MaintBotautomated metabolite conversion
8888view14:11, 7 January 2008MaintBotAdded to category $category
8886view14:11, 7 January 2008M.BraymerUploaded new pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
5'-methylthioadenosine Metabolite2457-80-9 (CAS)
5'-methylthioadenosineMetabolite2457-80-9 (CAS)
CO2Metabolite16526 (ChEBI)
H+Metabolite15378 (ChEBI)
L-ornithineMetabolite70-26-8 (CAS)
Methionine salvage pathwayPathway
S-adenosyl 3-(methylsulfanyl)propylamineMetabolite57443 (ChEBI)
S-adenosyl-L-methionine biosynthesisPathway
S-adenosyl-L-methionineMetabolite59789 (ChEBI)
SPE1GeneProductS000001667 (SGD)
SPE2GeneProductS000005412 (SGD)
SPE3GeneProductS000006273 (SGD)
SPE4GeneProductS000004136 (SGD)
putrescineMetabolite110-60-1 (CAS)
spermidineMetabolite124-20-9 (CAS)
spermineMetabolite71-44-3 (CAS)

Annotated Interactions

No annotated interactions

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