Glucosinolate biosynthesis (from aromatic amino acid) (Arabidopsis thaliana)

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3Phenylalanine, tyrosine and tryptophan biosynthesisL-PhenylalanineCYP79A2(E)-PhenylacetaldoximeS-(Phenylacetothiohydroximoyl)-L-cysteinePhenylacetothiohydroximateDesulfoglucotropeolinCYP83B1SUR1UGT74B1SOT1612, 4L-TryptophanL-TyrosineBenzyl glucosinolateIndole-3-acetaldehyde oximeS-(Indolylmethylthiohydroximoyl)-L-cysteineCYP79A1L-HomophenylalanineCatalyst3-PhenylpropionaldoximMetaboliteCatalystMetaboliteCatalystMetaboliteCatalyst2-Phenylethyl glucosinolateCatalystCYP79B2CYP79B3IndolylmethylthiohydroximateSUR1Indolylmethyl-desulfoglucosinolateUGT74B113-indolylmethyl glucosinolate(E)-4-Hydroxyphenylacetaldehyde oximeS-(Hydroxyphenylacetothiohydroximoyl)-L-cysteinep-HydroxyphenylacetothiohydroximateSUR1p-HydroxybenzyldesulphoglucosinolateCatalystp-Hydroxybenzyl glucosinolate4-Hydroxy-3-indolylmethylglucosinolateCYP81F2CYP81F4Catalyst1-Hydroxy-3-indolylmethylglucosinolate1-Methoxy-3-indolylmethylglucosinolateO-methyltransferaseMetaboliteCYP81F3CYP81F14-Methoxy-3-indolylmethylglucosinolateindole glucosinolate methyltransferaseCYP83B1CYP83B1SOT162, 4SOT162, 4


Description

This pathway describes the glucosinolate derived from aromatic amino acid (Phe, Tyr, Trp) in Arabidopsis thaliana. This is based on the KEGG pathway and PlantCyc. Some pathway entities are unknown and being investigated, these are denoted as "Catalyst" and "Metabolite" for now.

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Quality Tags

Ontology Terms

 

Bibliography

  1. Grubb CD, Zipp BJ, Ludwig-Mﾃｼller J, Masuno MN, Molinski TF, Abel S; ''Arabidopsis glucosyltransferase UGT74B1 functions in glucosinolate biosynthesis and auxin homeostasis.''; Plant J, 2004 PubMed Europe PMC Scholia
  2. Klein M, Papenbrock J; ''Kinetics and substrate specificities of desulfo-glucosinolate sulfotransferases in Arabidopsis thaliana.''; Physiol Plant, 2009 PubMed Europe PMC Scholia
  3. Wittstock U, Burow M; ''Glucosinolate breakdown in Arabidopsis: mechanism, regulation and biological significance.''; Arabidopsis Book, 2010 PubMed Europe PMC Scholia
  4. Klein M, Reichelt M, Gershenzon J, Papenbrock J; ''The three desulfoglucosinolate sulfotransferase proteins in Arabidopsis have different substrate specificities and are differentially expressed.''; FEBS J, 2006 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
105283view17:24, 26 July 2019KhanspersModified description
105269view21:07, 25 July 2019KhanspersOntology Term : 'classic metabolic pathway' added !
104458view04:02, 28 May 2019MikikotUse TAIR identification for gene product
104268view09:20, 14 May 2019AfukushimaModified title
104262view04:18, 14 May 2019MikikotModified description
104261view04:15, 14 May 2019MikikotNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
(E)-4-Hydroxyphenylacetaldehyde oximeMetaboliteC04350 (KEGG Compound)
(E)-PhenylacetaldoximeMetaboliteC19714 (KEGG Compound)
1-Hydroxy-3-indolylmethylglucosinolateMetabolite123131529 (PubChem-compound)
1-Methoxy-3-indolylmethylglucosinolateMetaboliteC00000126 (KNApSAcK)
2-Phenylethyl glucosinolateMetaboliteC08417 (KEGG Compound)
3-PhenylpropionaldoximMetaboliteC17236 (KEGG Compound)
3-indolylmethyl glucosinolateMetaboliteC00000125 (KNApSAcK)
4-Hydroxy-3-indolylmethylglucosinolateMetaboliteC00000127 (KNApSAcK)
4-Methoxy-3-indolylmethylglucosinolateMetaboliteC00000128 (KNApSAcK)
Benzyl glucosinolateMetaboliteCHEBI:17127 (ChEBI)
CYP79A1GeneProductK13027 (KEGG Genes)
CYP79A2GeneProductAT5G05260 (TAIR)
CYP79B2GeneProductAT4G39950 (TAIR)
CYP79B3GeneProductAT2G22330 (TAIR)
CYP81F1GeneProductAT4G37430 (TAIR)
CYP81F2GeneProductAT5G57220 (TAIR)
CYP81F3GeneProductAT4G37400 (TAIR)
CYP81F4GeneProductAT4G37410 (TAIR)
CYP83B1GeneProductAT4G31500 (TAIR)
CatalystGeneProduct
DesulfoglucotropeolinMetaboliteC01069 (KEGG Compound)
Indole-3-acetaldehyde oximeMetaboliteC02937 (KEGG Compound)
Indolylmethyl-desulfoglucosinolateMetaboliteC16517 (KEGG Compound)
IndolylmethylthiohydroximateMetaboliteC16516 (KEGG Compound)
L-HomophenylalanineMetaboliteC17235 (KEGG Compound)
L-PhenylalanineMetaboliteC00079 (KEGG Compound)
L-TryptophanMetaboliteC00078 (KEGG Compound)
L-TyrosineMetaboliteC00082 (KEGG Compound)
MetaboliteMetabolite
O-methyltransferaseGeneProductIGMT5 (TAIR)
PhenylacetothiohydroximateMetaboliteC03719 (KEGG Compound)
S-(Hydroxyphenylacetothiohydroximoyl)-L-cysteineMetaboliteC17238 (KEGG Compound)
S-(Indolylmethylthiohydroximoyl)-L-cysteineMetaboliteC16518 (KEGG Compound)
S-(Phenylacetothiohydroximoyl)-L-cysteineMetaboliteC17237 (KEGG Compound)
SOT16GeneProductAT1G74100 (TAIR)
SUR1GeneProductAT2G20610 (Gramene Arabidopsis)
SUR1GeneProductAT2G20610 (TAIR)
UGT74B1GeneProductAT1G24100 (TAIR)
indole glucosinolate methyltransferaseGeneProductIGMT1 (TAIR)
p-Hydroxybenzyl glucosinolateMetaboliteC08426 (KEGG Compound)
p-HydroxybenzyldesulphoglucosinolateMetaboliteC17240 (KEGG Compound)
p-HydroxyphenylacetothiohydroximateMetaboliteC17239 (KEGG Compound)

Annotated Interactions

No annotated interactions

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