16p11.2 proximal deletion syndrome (Homo sapiens)

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81035, 382212221143, 25387383115, 2316432729372817245, 23415724424211176, 9, 142011938KCTD13 deficient mice- synaptic formation- mature spine density in hippocampusstress induced cellcycle arrest andapoptosisChromosome 16: 29,592,751involved insperm and eggfusionFunction unclearEnzymatic activitydioxygenase activityVault formationexact function unknown but involvedin movement disorders in genetic epilepsies Lymphocyte traffickingLympthocyte polarizationFunction unclearinvolved in neuronal ERtraffickingexcitotoxic to neuronslocated in zymogen granule membraneinvolved in protein secretionmitosisRNA genepromotor bindingtranscriptionalregulatorunknown functionChromosome 16: 30,190,593Stress133412Apoptosis D-glyceraldehyde 3-phosphate(2−)MAZESR1PPARGCa2+H+PPP2R1ACCT6BCCT5PPP2CAMVPHistone modificationsFIMPKMT2DNAD+ biosynthesisEZRphthalic acidDNA replicationDiacylglycerolHistoneTCP1INO80Ecytidine 5'-monophosphate(2−)stearoyl-CoA(4−)Chaperonin-containing T-complexDOC2ATRAF6CCDC6SPNPPP4R3ACASP8NR3C1PRRT222q11.2 DS pathwaynicotinate β-D-ribonucleotidehsa-mir-3680-2CCT2Clathrin-mediated endocytosisALDOAMSNTMEM219N-octadecanoylsphingosineβ-D-fructofuranose 1,6-bisphosphate(4−)SEZ6L2diphosphate(3−)PAGR1ASPHD1NFKB1PPP2CBTAOK2CCT6ADNA Mismatch RepairHDAC3ActinCCT4MAPK cascadeKCTD13myo-inositolPPP4R1TLCD3BGlucocorticoid receptor pathwayUNC13BPPP4R2PCNAHIRANFKB1Glycolysis and GluconeogenesisINO80 complexCDIPTKIF22PPP2R5DPPP4R4sphingosine(1+)HIRIP3QPRTMAB21L4coenzyme A(4−)Neurotransmitter release cycleZG16RELSynaptic vesicle releasePTENSodium molybdateCCT7MAP2K6PhosphoproteinPhosphatase 4 complex1-phosphatidyl-1D-myo-inositol(1−)glycerone phosphate(2−)CDP-diacylglycerol(2−)MAP2K3PPP4R3BCCT85-phospho-α-D-ribose 1-diphosphatePARP4CO2PPP4CBPTFIGFBP3quinolinatePAXIP1Nucleotide Excision RepairKMT2CIGBP1SIAH128PAGR16, 9, 14222237291DNA replication31UNC13A4444H+coenzyme A(4−)N-icosanoylsphingosineH+coenzyme A(4−)N-hexadecanoylsphingosineH+icosanoyl-CoA(4−)sphingosine(1+)palmitoyl-CoA(4−)sphingosine(1+)5HDAC35, 23, 33PPP4R3CPPP4C32323232CCT332323232323232REL32TRAF6TRAF2TRAF23636Transcription factor regulatingmesoderm specificationmesoderm segmentation(in zebrafish)CORO1A18, 27hexadecanoateCa2+TBX6N-arachidonoyl-1-oleoyl-sn-glycero-3-phosphoethanolamine(1−)H2Opalmitoyl ethanolamide1-(1Z-octadecenyl)-sn-glycero-3-phospho-(N-hexadecanoyl)ethanolamine(1−)TP53YPEL3palmitoyl ethanolamidecholine alfoscerate1-oleoyl-sn-glycero-3-phosphate(2−)choline1-hexadecanoyl-sn-glycero-3-phosphocholine1-palmitoyl-sn-glycerol 3-phosphate(2−)N,1-dioleoyl-sn-glycero-3-phosphoethanolamine(1−)1-(1Z-octadecenyl)-sn-glycero-3-phosphate(2−)GDPD31-oleoyl-sn-glycero-3-phosphate(2−)1-hexadecyl-sn-glycero-3-phosphate(2−)N-palmitoyl-1-oleoyl-sn-glycero-3-phosphoethanolamine(1−)Oncogene Induced Senescencelysophosphatidylcholine O-16:0/0:0oleoyl ethanolamideanandamideMAPK3H+H2OH+1-hexadecanoyl-sn-glycero-3-phosphocholineH2OH+H2O36H+36H2OH+1-oleoyl-sn-glycero-3-phosphate(2−)H2O36H+36H2OcholineH+3626, 30


Description

16p11.2 proximal deletion syndrome is a rare genetic disorder (copy number variation) caused by a deletion in the region of chromosome 16 from 29,592,751 to 30,190,593 bp (GRCh37). The breakpoints are from: Dell'Edera 2018 PMID: 29609622.

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Bibliography

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History

View all...
CompareRevisionActionTimeUserComment
125693view13:00, 7 March 2023Fehrhartremoved pseudogenes
115778view15:17, 11 March 2021FehrhartModified description
113592view08:18, 4 November 2020Fehrhartconnected unconnected lines
113017view05:57, 30 October 2020EgonwReplaced a secondary ChEBI identifier
112993view10:30, 29 October 2020Fehrhartfirst complete draft done
112992view10:19, 29 October 2020Fehrhartwork in progress
112991view09:34, 29 October 2020Fehrhartwork in progress
112982view13:14, 28 October 2020Fehrhartwork in progress
112961view07:25, 23 October 2020EgonwReplaced secondary ChEBI identifiers
112957view15:22, 22 October 2020Fehrhartwork in progress
112956view15:03, 22 October 2020Fehrhartwork in progress
112946view09:01, 22 October 2020Fehrhartwork in progress
112920view10:24, 20 October 2020Fehrhartwork in progress
112918view10:07, 20 October 2020Fehrhartwork in progress
112917view09:36, 20 October 2020Fehrhartwork in progress
112846view05:47, 12 October 2020EgonwReplaced secondary ChEBI IDs with primary IDs
112286view13:02, 9 October 2020Fehrhartwork in progress
112285view12:14, 9 October 2020Fehrhartwork in progress
112284view11:34, 9 October 2020Fehrhartwork in progress
112283view11:05, 9 October 2020Fehrhartwork in progress
112282view10:16, 9 October 2020Fehrhartwork in progress
112269view15:03, 8 October 2020Fehrhartwork in progress
112128view20:40, 25 September 2020Khanspersdecreased board size
111261view15:35, 27 July 2020FehrhartModified description
111257view15:34, 27 July 2020FehrhartOntology Term : 'chromosome 16p11.2 deletion syndrome, 220kb' added !
111256view15:34, 27 July 2020FehrhartOntology Term : 'disease pathway' added !
111255view15:34, 27 July 2020FehrhartOntology Term : 'genetic disease' added !
111253view15:32, 27 July 2020FehrhartModified description
111251view15:20, 27 July 2020FehrhartNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
1-(1Z-octadecenyl)-sn-glycero-3-phosphate(2−)Metabolite137017 (ChEBI)
1-(1Z-octadecenyl)-sn-glycero-3-phospho- (N-hexadecanoyl)ethanolamine(1−)Metabolite137009 (ChEBI)
1-hexadecanoyl-sn-glycero-3-phosphocholineMetabolite72998 (ChEBI)
1-hexadecyl-sn-glycero-3-phosphate(2−)Metabolite77580 (ChEBI)
1-oleoyl-sn-glycero-3-phosphate(2−)Metabolite74544 (ChEBI)
1-palmitoyl-sn-glycerol 3-phosphate(2−)Metabolite57518 (ChEBI)
1-phosphatidyl-1D-myo-inositol(1−)Metabolite57880 (ChEBI)
22q11.2 DS pathwayPathwayWP4657 (WikiPathways)
5-phospho-α-D-ribose 1-diphosphateMetabolite58017 (ChEBI)
ALDOAGeneProductENSG00000149925 (Ensembl)
ASPHD1GeneProductENSG00000174939 (Ensembl)
ActinGeneProductPF00022 (Pfam)
Apoptosis PathwayWP254 (WikiPathways)
BPTFGeneProductENSG00000171634 (Ensembl) FAC1
CASP8GeneProductENSG00000064012 (Ensembl)
CCDC6GeneProductENSG00000108091 (Ensembl)
CCT2GeneProductENSG00000166226 (Ensembl)
CCT3GeneProductENSG00000163468 (Ensembl)
CCT4GeneProductENSG00000115484 (Ensembl)
CCT5GeneProductENSG00000150753 (Ensembl)
CCT6AGeneProductENSG00000146731 (Ensembl)
CCT6BGeneProductENSG00000132141 (Ensembl)
CCT7GeneProductENSG00000135624 (Ensembl)
CCT8GeneProductENSG00000156261 (Ensembl)
CDIPTGeneProductENSG00000103502 (Ensembl)
CDP-diacylglycerol(2−)Metabolite58332 (ChEBI)
CO2MetaboliteCHEBI:16526 (ChEBI)
CORO1AGeneProductENSG00000102879 (Ensembl)
Ca2+MetaboliteCHEBI:29108 (ChEBI)
Chaperonin-containing T-complexComplexCPX-6030 (EMBL) Complex Portal
Clathrin-mediated endocytosisPathwayWP4065 (WikiPathways)
D-glyceraldehyde 3-phosphate(2−)Metabolite59776 (ChEBI)
DNA Mismatch RepairPathwayWP531 (WikiPathways)
DNA replicationPathwayWP466 (WikiPathways)
DOC2AGeneProductENSG00000149927 (Ensembl)
DiacylglycerolMetaboliteCHEBI:18035 (ChEBI)
ESR1GeneProductENSG00000091831 (Ensembl)
EZRGeneProductENSG00000092820 (Ensembl)
FIMPGeneProductENSG00000167194 (Ensembl) C16orf92
GDPD3GeneProductENSG00000102886 (Ensembl)
Glucocorticoid receptor pathwayPathwayWP2880 (WikiPathways)
Glycolysis and GluconeogenesisPathwayWP534 (WikiPathways)
H+Metabolite15378 (ChEBI)
H2OMetabolite15377 (ChEBI)
HDAC3GeneProductENSG00000171720 (Ensembl)
HIRAGeneProductENSG00000100084 (Ensembl)
HIRIP3GeneProductENSG00000149929 (Ensembl)
Histone modificationsPathwayWP2369 (WikiPathways)
HistoneGeneProductPF00125 (Pfam)
IGBP1GeneProductENSG00000089289 (Ensembl)
IGFBP3GeneProductENSG00000146674 (Ensembl)
INO80 complex Complex
INO80EGeneProductENSG00000169592 (Ensembl)
KCTD13GeneProductENSG00000174943 (Ensembl)
KIF22GeneProductENSG00000079616 (Ensembl)
KMT2CGeneProductENSG00000055609 (Ensembl)
KMT2DGeneProductENSG00000167548 (Ensembl)
MAB21L4GeneProductENSG00000185905 (Ensembl) C2orf54
MAP2K3GeneProductENSG00000034152 (Ensembl)
MAP2K6GeneProductENSG00000108984 (Ensembl)
MAPK cascadePathwayWP422 (WikiPathways)
MAPK3GeneProductENSG00000102882 (Ensembl)
MAZGeneProductENSG00000103495 (Ensembl)
MSNGeneProductENSG00000147065 (Ensembl)
MVPGeneProductENSG00000013364 (Ensembl)
N,1-dioleoyl-sn-glycero- 3-phosphoethanolamine(1−)Metabolite85222 (ChEBI)
N-arachidonoyl-1-oleoyl-sn- glycero-3-phosphoethanolamine(1−)Metabolite85223 (ChEBI)
N-hexadecanoylsphingosineMetabolite72959 (ChEBI)
N-icosanoylsphingosineMetabolite72962 (ChEBI)
N-octadecanoylsphingosineMetabolite72961 (ChEBI)
N-palmitoyl-1-oleoyl-sn-glycero- 3-phosphoethanolamine(1−)Metabolite85217 (ChEBI)
NAD+ biosynthesisPathwayWP3645 (WikiPathways)
NFKB1GeneProductENSG00000109320 (Ensembl)
NR3C1GeneProductENSG00000113580 (Ensembl)
Neurotransmitter release cyclePathwayWP1871 (WikiPathways)
Nucleotide Excision RepairPathway1980 (WikiPathways)
Oncogene Induced SenescencePathwayWP3308 (WikiPathways)
PAGR1GeneProductENSG00000280789 (Ensembl)
PARP4GeneProductENSG00000102699 (Ensembl)
PAXIP1GeneProductENSG00000157212 (Ensembl)
PCNAGeneProductENSG00000132646 (Ensembl)
PPARGGeneProductENSG00000132170 (Ensembl)
PPP2CAGeneProductENSG00000113575 (Ensembl)
PPP2CBGeneProductENSG00000104695 (Ensembl)
PPP2R1AGeneProductENSG00000105568 (Ensembl)
PPP2R5DGeneProductENSG00000112640 (Ensembl)
PPP4CGeneProductENSG00000149923 (Ensembl)
PPP4R1GeneProductENSG00000154845 (Ensembl)
PPP4R2GeneProductENSG00000163605 (Ensembl)
PPP4R3AGeneProductENSG00000100796 (Ensembl) SMEK1
PPP4R3BGeneProductENSG00000275052 (Ensembl) SMEK2
PPP4R3CGeneProductENSG00000224960 (Ensembl)
PPP4R4GeneProductENSG00000119698 (Ensembl)
PRRT2GeneProductENSG00000167371 (Ensembl)
PTENGeneProductENSG00000171862 (Ensembl)
Phosphoprotein Phosphatase 4 complexComplex
QPRTGeneProductENSG00000103485 (Ensembl)
RELGeneProductENSG00000162924 (Ensembl)
SEZ6L2GeneProductENSG00000174938 (Ensembl)
SIAH1GeneProductENSG00000196470 (Ensembl)
SPNGeneProductENSG00000197471 (Ensembl) Leukosialin also known as sialophorin or CD43
Sodium molybdateMetaboliteCHEBI:75215 (ChEBI)
Synaptic vesicle releasePathwayWP2267 (WikiPathways)
TAOK2GeneProductENSG00000149930 (Ensembl)
TBX6GeneProductENSG00000149922 (Ensembl)
TCP1GeneProductENSG00000120438 (Ensembl)
TLCD3BGeneProductENSG00000149926 (Ensembl)
TMEM219GeneProductENSG00000149932 (Ensembl) IGFBP-3R
TP53GeneProductENSG00000141510 (Ensembl)
TRAF2GeneProductENSG00000127191 (Ensembl)
TRAF6GeneProductENSG00000175104 (Ensembl)
UNC13AGeneProductENSG00000130477 (Ensembl) MUNC13
UNC13BGeneProductENSG00000198722 (Ensembl) MUNC13
YPEL3GeneProductENSG00000090238 (Ensembl)
ZG16GeneProductENSG00000174992 (Ensembl)
anandamideMetabolite2700 (ChEBI)
choline alfoscerateMetabolite16870 (ChEBI)
cholineMetabolite15354 (ChEBI)
coenzyme A(4−)Metabolite57287 (ChEBI)
cytidine 5'-monophosphate(2−)Metabolite60377 (ChEBI)
diphosphate(3−) Metabolite33019 (ChEBI)
glycerone phosphate(2−)Metabolite57642 (ChEBI)
hexadecanoateMetabolite7896 (ChEBI)
hsa-mir-3680-2GeneProductMI0019113 (miRBase Sequence)
icosanoyl-CoA(4−)Metabolite57380 (ChEBI)
lysophosphatidylcholine O-16:0/0:0Metabolite64496 (ChEBI)
myo-inositolMetabolite17268 (ChEBI)
nicotinate β-D-ribonucleotideMetabolite57502 (ChEBI)
oleoyl ethanolamideMetabolite71466 (ChEBI)
palmitoyl ethanolamideMetabolite71464 (ChEBI)
palmitoyl-CoA(4−)Metabolite57379 (ChEBI)
phthalic acidMetaboliteCHEBI:29069 (ChEBI)
quinolinateMetaboliteCHEBI:29959 (ChEBI)
sphingosine(1+)Metabolite57756 (ChEBI)
stearoyl-CoA(4−)Metabolite57394 (ChEBI)
β-D-fructofuranose 1,6-bisphosphate(4−)Metabolite32966 (ChEBI)

Annotated Interactions

View all...
SourceTargetTypeDatabase referenceComment
CDIPTmim-catalysis11580 (Rhea)
mim-conversion11580 (Rhea)
mim-conversion36687 (Rhea)
mim-conversion36691 (Rhea)
mim-conversion38975 (Rhea)
mim-conversion40435 (Rhea)
mim-conversion41143 (Rhea)
mim-conversion45284 (Rhea)
mim-conversion45544 (Rhea)
mim-conversion53168 (Rhea)
mim-conversion53184 (Rhea)
mim-conversion56460 (Rhea)
β-D-fructofuranose 1,6-bisphosphate(4−)mim-conversion14729 (Rhea)
Retrieved from "https://classic.wikipathways.org/index.php/Pathway:WP4949"
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