Exercise-induced Circadian Regulation (Pan troglodytes)

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mHrts mLvrsmLvrsmLvrsPermHrtsmHrtsE-BoxmHrtsMetabolismPer2mHrtsCry1mLvrs,p SCNpLREmLvrp mSCNpmHrts mLvrs,p mSCNOrtholog references:mHrtsCry2mLvrp, mSCNpNucleusLREmHrts mLvrs,pmLvrpmLvrp mSCNpmLvrpmLvrsDNA/RNA BindingmSCNpCell CyclePer1mLvrs,pmSCNpmLvrpmLvrpmHrtsmHrtsmHrts mLvrs,p mSCNpTranscriptionSignalingmHrts, mLvrsmSCNpmLvrs,pmLvrpmLvrs,pmHrtsmHrts mLvrs, mSCNpmSCNpStructural/CytoskeletonmHrts mLvrsmLvrs,pmLvrsmLvrsmLvrpmSCNpmHrtsProtein ModificationE-BoxChaperonemHrtsmHrtsmHrts LvrspmLvrsOthermHrtsCrymSCNpmHrts mLvrpmLvrs,p12KLF9NCOA4ARNTLCRY2RBPMSMYF6NR1D2TUBB3CLOCKPURASUMO3ERC2QKINCKAP1STBD1ETV6UCP3GSTP1PER2DNAJA1HERPUD1CLDN5HLA-DMAAZIN1TOB1PPP2CBSUMO1PPP1R3CSF3A3MAP3K7IP2DAZAP2BTG1G0S2PER1HSPA8GFRA1CRY1EIF4G2ZFRUGP2CBX3VAPAPSMA4CEBPBLOC462508GSTM3IDI1PIGF


Description

Human genes regulated in the diurnal comparison with orthologues that display circadian regulation in mouse heart and liver (Panda 2002, Storch 2002), and SCN (Panda 2002). The 608 significantly regulated (P < 0.05) hSkM genes identified in the diurnal comparison (0800 h and 2000 h) were subjected to an additional statistical filter of absolute fold change > 20% (n = 239) and linked to mouse circadianly regulated orthologues. This pathway represents the resultant 44 putative hSkM circadianly regulated genes; L, promoter for the light-responsive element; E, E-box (Clock/Bmal1 promoter). Orthologue information is denoted to the left of the gene boxes: mHrts and mLvrs, mouse orthologue was circadianly regulated as described (Storch 2002) in mouse heart or liver, respectively; mLvrp and mSCNp, mouse orthologue was diurnally regulated as described (Panda 2002) in mouse liver or SCN, respectively.

Comments

GenMAPP notes 
Time- and exercise-dependent gene regulation in human skeletal muscle

Alexander C Zambon, Erin L McDearmon, Nathan Salomonis, Karen M Vranizan, Kirsten L Johansen, Deborah Adey, Joseph S Takahashi, Morris Schambelan, Bruce R Conklin
Genome Biology 4(10): R61
http://genomebiology.com/2003/4/10/R61
Published 25 September 2003

GenMAPP remarks 
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HomologyConvert 
This pathway was inferred from Homo sapiens pathway WP410(r28213) with a 89% conversion rate.

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Bibliography

  1. Storch KF, Lipan O, Leykin I, Viswanathan N, Davis FC, Wong WH, Weitz CJ; ''Extensive and divergent circadian gene expression in liver and heart.''; Nature, 2002 PubMed Europe PMC Scholia
  2. Panda S, Antoch MP, Miller BH, Su AI, Schook AB, Straume M, Schultz PG, Kay SA, Takahashi JS, Hogenesch JB; ''Coordinated transcription of key pathways in the mouse by the circadian clock.''; Cell, 2002 PubMed Europe PMC Scholia

History

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CompareRevisionActionTimeUserComment
90753view00:58, 14 December 2016KhanspersModified title
87237view09:49, 20 July 2016SusanOntology Term : 'regulatory pathway' added !
69224view18:33, 8 July 2013MaintBotUpdated to 2013 gpml schema
41527view01:57, 2 March 2011MaintBotRemoved redundant pathway information and comments
34264view21:52, 9 December 2009MaintBotAutomatic update of empty xrefs
33591view09:54, 1 December 2009MaintBotRemoved group label
30510view21:46, 29 July 2009MaintBotNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
ARNTLGeneProduct451034 (Entrez Gene)
AZIN1GeneProduct464324 (Entrez Gene) 101002 at
BTG1GeneProduct452121 (Entrez Gene) 93104 at
CBX3GeneProduct463300 (Entrez Gene) 100405 at
CEBPBGeneProduct469969 (Entrez Gene) 92925 at
CLDN5GeneProduct458955 (Entrez Gene) 104516 at
CLOCKGeneProduct461312 (Entrez Gene)
CRY1GeneProduct452205 (Entrez Gene)
CRY2GeneProduct742186 (Entrez Gene)
DAZAP2GeneProduct451902 (Entrez Gene) 94454 at
DNAJA1GeneProduct746627 (Entrez Gene) 97261 at
EIF4G2GeneProduct466443 (Entrez Gene) 100535 at
ERC2GeneProduct460460 (Entrez Gene) 93829 at
ETV6GeneProduct473366 (Entrez Gene) 93866 s at
G0S2GeneProduct457697 (Entrez Gene) 97531 at
GFRA1GeneProduct450756 (Entrez Gene) 93872 at
GSTM3GeneProduct457128 (Entrez Gene) 97681 f at
GSTP1GeneProduct745954 (Entrez Gene) 99583 at
HERPUD1GeneProduct454109 (Entrez Gene) 95057 at
HLA-DMAGeneProduct162346 f at
HSPA8GeneProduct451629 (Entrez Gene) 96564 at
IDI1GeneProduct450263 (Entrez Gene) 96269 at
KLF9GeneProduct464520 (Entrez Gene) 93527 at
LOC462508GeneProduct462508 (Entrez Gene) 93833 s at
MAP3K7IP2GeneProduct463057 (Entrez Gene) 160309 at
MYF6GeneProduct745321 (Entrez Gene) 102265 at
NCKAP1GeneProduct459801 (Entrez Gene) 95508 at
NCOA4GeneProduct450455 (Entrez Gene) 97843 at
NR1D2GeneProduct460230 (Entrez Gene) 99076 at
PER1GeneProduct455098 (Entrez Gene)
PER2GeneProduct460057 (Entrez Gene)
PIGFGeneProduct459207 (Entrez Gene) 104725 at
PPP1R3CGeneProduct450596 (Entrez Gene) 93933 at
PPP2CBGeneProduct464100 (Entrez Gene) 101101 at
PSMA4GeneProduct453569 (Entrez Gene) 97459 at
PURAGeneProduct471649 (Entrez Gene) 103501 at
QKIGeneProduct472181 (Entrez Gene) 95096 at (mouse)
RBPMSGeneProduct745703 (Entrez Gene) 103888 at
SF3A3GeneProduct745795 (Entrez Gene) 96029 at
STBD1GeneProduct738648 (Entrez Gene) 104116 at
SUMO1GeneProduct459882 (Entrez Gene) 101091 at
SUMO3GeneProduct740716 (Entrez Gene) 95424 at
TOB1GeneProduct468406 (Entrez Gene) 99532 at
TUBB3GeneProduct94835 f at
UCP3GeneProduct748551 (Entrez Gene) 93392 at
UGP2GeneProduct459273 (Entrez Gene) 94481 at
VAPAGeneProduct455288 (Entrez Gene) 94889 at
ZFRGeneProduct461948 (Entrez Gene) 104050 at

Annotated Interactions

No annotated interactions
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