Portal:Semantic Web/Open PHACTS API

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Current revision (11:34, 18 October 2019) (view source)
 
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The [http://www.openphacts.org/ Open PHACTS projects] provides an alternative to work with the WikiPathways RDF, as it is loaded in the data cache of Open PHACTS. The [https://dev.openphacts.org/docs Open PHACTS API] provides various queries, like "give me all targets in a pathway". It requires a [https://dev.openphacts.org/signup (free) account] to use this system.
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Human approved pathway data is now also part of Wikidata!
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[https://www.wikidata.org/wiki/Wikidata:SPARQL_query_service/queries/examples#Federated_queries Check out] which federated queries you can perform.
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For example, to get the pathways in which SLC25A4 is found, you can use curl:
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<!-- Below is old text from OpenPhacts API; since that is not working, I put it in as a comment [[user:DeSl|DeSl]]
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    curl -X GET --header "Accept: application/json" "https://beta.openphacts.org/2.1/pathways/byTarget?uri=http%3A%2F%2Fidentifiers.org%2Fncbigene%2F282478&app_id=91f5d4d0&app_key=1af5086da757e57c553bfa1351708d5f"
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The [http://www.openphacts.org/ Open PHACTS projects] API is currently unavailable.
== API clients ==
== API clients ==
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* [https://www.openphacts.org/open-phacts-discovery-platform/knime KNIME nodes] (beta)
* [https://www.openphacts.org/open-phacts-discovery-platform/knime KNIME nodes] (beta)
* R package: [https://github.com/egonw/ropenphacts ropenphacts] (experimental)
* R package: [https://github.com/egonw/ropenphacts ropenphacts] (experimental)
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Current revision

Human approved pathway data is now also part of Wikidata! Check out which federated queries you can perform.


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