Portal:Blau/PathwayAnalysis

From WikiPathways

(Difference between revisions)
Jump to: navigation, search
(New page: As part of this effort, various data analysis approaches have been developed. These will be described here very soon.)
Current revision (13:15, 24 August 2020) (view source)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
As part of this effort, various data analysis approaches have been developed. These will be described here very soon.
+
[[Image:NetworkAnalysisPurine.png‎|left|350px]]
 +
With the pathways from the Blau book (as well as with other pathways on WikiPathways), various data analysis approaches can be performed.
 +
 
 +
For example scripts (in R), please visit [https://bigcat-um.github.io/PathwayAnalysisBlauBook/ PathwayAnalysisBlauBook].
 +
 
 +
The Figure on the left shows an example of network analysis with [https://cytoscape.org/ Cytoscape], where known drug-target interactions from [https://www.drugbank.ca/ DrugBank] using the [https://cytargetlinker.github.io/ CyTargetLinker app] have been added to the [https://www.wikipathways.org/index.php/Pathway:WP4224 purine metabolism pathway].

Current revision

With the pathways from the Blau book (as well as with other pathways on WikiPathways), various data analysis approaches can be performed.

For example scripts (in R), please visit PathwayAnalysisBlauBook.

The Figure on the left shows an example of network analysis with Cytoscape, where known drug-target interactions from DrugBank using the CyTargetLinker app have been added to the purine metabolism pathway.

Personal tools