Portal:IEM/PathwayAnalysis
From WikiPathways
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To download all pathways tagged for Inborn Errors of Metabolsim as GPML, click [http://www.wikipathways.org//wpi/batchDownload.php?species=Homo%20sapiens&fileType=gpml&tag=Curation:IEM here]. | To download all pathways tagged for Inborn Errors of Metabolsim as GPML, click [http://www.wikipathways.org//wpi/batchDownload.php?species=Homo%20sapiens&fileType=gpml&tag=Curation:IEM here]. | ||
| - | For example scripts (in R), please visit [https://bigcat-um.github.io/ | + | For example scripts (in R), please visit [https://bigcat-um.github.io/IEMPathwayAnalysis/ IEMPathwayAnalysis]. |
The Figure on the left shows an example of network analysis with [https://cytoscape.org/ Cytoscape], where known drug-target interactions from [https://www.drugbank.ca/ DrugBank] using the [https://cytargetlinker.github.io/ CyTargetLinker app] have been added to the [https://www.wikipathways.org/index.php/Pathway:WP4224 purine metabolism pathway]. | The Figure on the left shows an example of network analysis with [https://cytoscape.org/ Cytoscape], where known drug-target interactions from [https://www.drugbank.ca/ DrugBank] using the [https://cytargetlinker.github.io/ CyTargetLinker app] have been added to the [https://www.wikipathways.org/index.php/Pathway:WP4224 purine metabolism pathway]. | ||
Revision as of 08:54, 11 April 2022
With the pathways from the Blau book (as well as with other pathways on WikiPathways), various data analysis approaches can be performed.
For the current overview of which pathways are covered and their status, see here.
To download all pathways tagged for Inborn Errors of Metabolsim as GPML, click here.
For example scripts (in R), please visit IEMPathwayAnalysis.
The Figure on the left shows an example of network analysis with Cytoscape, where known drug-target interactions from DrugBank using the CyTargetLinker app have been added to the purine metabolism pathway.
