Portal:COVID-19/Contribute

From WikiPathways

Revision as of 11:30, 9 September 2020 (view source) DeSl (Talk | contribs) (New page: {{#section:Help:Authors|covid-help}} === Contact us === Send questions about WikiPathways to the [mailto:[email protected] wikipathways-discuss mailing list]. === How...) ← Previous diff		Current revision (06:43, 6 August 2022) (view source) Egonw (Talk | contribs) (Updated the link to the curation reports)
(4 intermediate revisions not shown.)
Line 1:		Line 1:
-	{{#section:Help:Authors|covid-help}}	+	We are helping to coordinate an international effort to build and curate pathway models relevant to the COVID-19 pandemic. Review the resources below to see how you can get involved.
-	=== Contact us ===	+	* '''[[Portal:Disease/COVIDPathways|growing collection of COVID-19 pathways]]'''. If you find or add a pathway at WikiPathways that should be included in this collection, please [https://groups.google.com/forum/#!forum/wikipathways-discuss let us know].
-	Send questions about WikiPathways to the [mailto:wikipathways-discuss@googlegroups.com wikipathways-discuss mailing list].	+	* '''[https://gladstone-bioinformatics.shinyapps.io/shiny-covidpathways/ Published pathway figures related to COVID-19]'''. Useful resource of previously published ''(but not modeled)'' pathways for direct translation as new pathways or to inform related pathway curation.
		+	* '''[https://alexanderpico.github.io/SARS-CoV-2_Alignments/ Protein sequence alignments of SARS-CoV-2]'''. Useful resource mapping SARS-CoV-2 proteins to those previously studied, including many solved structures.
		+	* '''[https://covid.pages.uni.lu/map_curation COVID-19 disease map initiative].''' An even broader community of pathway curators working with WikiPathways, Pathway Commons, Reactome, Cell Designer and more. Great community and set of resources, including repos, file shares, mailing list and Slack channel.
		+	* '''[https://egonw.github.io/SARS-CoV-2-Queries/sparql/virusProteinsAll.code.html Human Coronavirus protein identifiers] and [https://egonw.github.io/SARS-CoV-2-Queries/sparql/virusProteins.code.html SARS-CoV-2 protein identifiers]'''
		+	* '''[https://pubchem.ncbi.nlm.nih.gov/#query=coronavirus&tab=pathway PubChem list of the COVID-19 Portal pathways]'''
		+	* '''[https://knowledge-graph-hub.github.io/kg-covid-19-dashboard/ KG COVID-19]''', a knowledge graph aggregating many sources as RDF
-	=== How to add a pathway to the portal  ===	+	IMPORTANT: WikiPathways is dedicated to [https://www.go-fair.org/fair-principles FAIR standards]. All content at WikiPathways is freely available for use and reuse by a [[WikiPathways:License_Terms|CC0 waiver]].
-	The list of Featured Pathways is not static and can be updated at any time. If you know of a pathway that should be added, please [mailto:[email protected] contact the administrator].	+	=== Curation ===
-	* See our Help section for [[:Help:New_Contributor_Quickstart|New Contributor QuickStart]], [[:Help:Guidelines_EditorPalette|Editor's Palette Guide]] and [[:Help:Guidelines|Guidelines for Contributors]].	+	There are curation tests being done, that check a number of drawing patterns, e.g. as agreed with the COVID-19 Disease Maps project. The
		+	reports can be found [https://new.wikipathways.org/SARS-CoV-2-WikiPathways/ in this repository].

---

Current revision

We are helping to coordinate an international effort to build and curate pathway models relevant to the COVID-19 pandemic. Review the resources below to see how you can get involved.

• growing collection of COVID-19 pathways. If you find or add a pathway at WikiPathways that should be included in this collection, please let us know.
• Published pathway figures related to COVID-19. Useful resource of previously published (but not modeled) pathways for direct translation as new pathways or to inform related pathway curation.
• Protein sequence alignments of SARS-CoV-2. Useful resource mapping SARS-CoV-2 proteins to those previously studied, including many solved structures.
• COVID-19 disease map initiative. An even broader community of pathway curators working with WikiPathways, Pathway Commons, Reactome, Cell Designer and more. Great community and set of resources, including repos, file shares, mailing list and Slack channel.
• Human Coronavirus protein identifiers and SARS-CoV-2 protein identifiers
• PubChem list of the COVID-19 Portal pathways
• KG COVID-19, a knowledge graph aggregating many sources as RDF

IMPORTANT: WikiPathways is dedicated to FAIR standards. All content at WikiPathways is freely available for use and reuse by a CC0 waiver.

Curation

There are curation tests being done, that check a number of drawing patterns, e.g. as agreed with the COVID-19 Disease Maps project. The reports can be found in this repository.