Portal:COVID-19/Contribute
From WikiPathways
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Current revision (06:43, 6 August 2022) (view source) (Updated the link to the curation reports) |
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We are helping to coordinate an international effort to build and curate pathway models relevant to the COVID-19 pandemic. Review the resources below to see how you can get involved. | We are helping to coordinate an international effort to build and curate pathway models relevant to the COVID-19 pandemic. Review the resources below to see how you can get involved. | ||
| - | * '''[[Portal:Disease/COVIDPathways| | + | * '''[[Portal:Disease/COVIDPathways|growing collection of COVID-19 pathways]]'''. If you find or add a pathway at WikiPathways that should be included in this collection, please [https://groups.google.com/forum/#!forum/wikipathways-discuss let us know]. |
* '''[https://gladstone-bioinformatics.shinyapps.io/shiny-covidpathways/ Published pathway figures related to COVID-19]'''. Useful resource of previously published ''(but not modeled)'' pathways for direct translation as new pathways or to inform related pathway curation. | * '''[https://gladstone-bioinformatics.shinyapps.io/shiny-covidpathways/ Published pathway figures related to COVID-19]'''. Useful resource of previously published ''(but not modeled)'' pathways for direct translation as new pathways or to inform related pathway curation. | ||
* '''[https://alexanderpico.github.io/SARS-CoV-2_Alignments/ Protein sequence alignments of SARS-CoV-2]'''. Useful resource mapping SARS-CoV-2 proteins to those previously studied, including many solved structures. | * '''[https://alexanderpico.github.io/SARS-CoV-2_Alignments/ Protein sequence alignments of SARS-CoV-2]'''. Useful resource mapping SARS-CoV-2 proteins to those previously studied, including many solved structures. | ||
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* '''[https://egonw.github.io/SARS-CoV-2-Queries/sparql/virusProteinsAll.code.html Human Coronavirus protein identifiers] and [https://egonw.github.io/SARS-CoV-2-Queries/sparql/virusProteins.code.html SARS-CoV-2 protein identifiers]''' | * '''[https://egonw.github.io/SARS-CoV-2-Queries/sparql/virusProteinsAll.code.html Human Coronavirus protein identifiers] and [https://egonw.github.io/SARS-CoV-2-Queries/sparql/virusProteins.code.html SARS-CoV-2 protein identifiers]''' | ||
* '''[https://pubchem.ncbi.nlm.nih.gov/#query=coronavirus&tab=pathway PubChem list of the COVID-19 Portal pathways]''' | * '''[https://pubchem.ncbi.nlm.nih.gov/#query=coronavirus&tab=pathway PubChem list of the COVID-19 Portal pathways]''' | ||
| + | * '''[https://knowledge-graph-hub.github.io/kg-covid-19-dashboard/ KG COVID-19]''', a knowledge graph aggregating many sources as RDF | ||
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IMPORTANT: WikiPathways is dedicated to [https://www.go-fair.org/fair-principles FAIR standards]. All content at WikiPathways is freely available for use and reuse by a [[WikiPathways:License_Terms|CC0 waiver]]. | IMPORTANT: WikiPathways is dedicated to [https://www.go-fair.org/fair-principles FAIR standards]. All content at WikiPathways is freely available for use and reuse by a [[WikiPathways:License_Terms|CC0 waiver]]. | ||
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| + | === Curation === | ||
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| + | There are curation tests being done, that check a number of drawing patterns, e.g. as agreed with the COVID-19 Disease Maps project. The | ||
| + | reports can be found [https://new.wikipathways.org/SARS-CoV-2-WikiPathways/ in this repository]. | ||
Current revision
We are helping to coordinate an international effort to build and curate pathway models relevant to the COVID-19 pandemic. Review the resources below to see how you can get involved.
- growing collection of COVID-19 pathways. If you find or add a pathway at WikiPathways that should be included in this collection, please let us know.
- Published pathway figures related to COVID-19. Useful resource of previously published (but not modeled) pathways for direct translation as new pathways or to inform related pathway curation.
- Protein sequence alignments of SARS-CoV-2. Useful resource mapping SARS-CoV-2 proteins to those previously studied, including many solved structures.
- COVID-19 disease map initiative. An even broader community of pathway curators working with WikiPathways, Pathway Commons, Reactome, Cell Designer and more. Great community and set of resources, including repos, file shares, mailing list and Slack channel.
- Human Coronavirus protein identifiers and SARS-CoV-2 protein identifiers
- PubChem list of the COVID-19 Portal pathways
- KG COVID-19, a knowledge graph aggregating many sources as RDF
IMPORTANT: WikiPathways is dedicated to FAIR standards. All content at WikiPathways is freely available for use and reuse by a CC0 waiver.
Curation
There are curation tests being done, that check a number of drawing patterns, e.g. as agreed with the COVID-19 Disease Maps project. The reports can be found in this repository.
