WikiPathways
From WikiPathways
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<h2 class="frontPagePanel redFg">Welcome to WikiPathways <sup>BETA</sup></h2> | <h2 class="frontPagePanel redFg">Welcome to WikiPathways <sup>BETA</sup></h2> | ||
<font size=2>'''In the new tradition of [[wikipedia:Main_Page|Wikipedia]], WikiPathways is an open, public platform dedicated to the curation of biological pathways by and for the scientific community. [[WikiPathways:About|More about WikiPathways...]]'''</font></div> | <font size=2>'''In the new tradition of [[wikipedia:Main_Page|Wikipedia]], WikiPathways is an open, public platform dedicated to the curation of biological pathways by and for the scientific community. [[WikiPathways:About|More about WikiPathways...]]'''</font></div> | ||
Revision as of 15:33, 25 September 2010
Welcome to WikiPathways BETA
In the new tradition of Wikipedia, WikiPathways is an open, public platform dedicated to the curation of biological pathways by and for the scientific community. More about WikiPathways...</div>
Finding Pathways
| Search{{#googleCoop:}} | Browse
 Browse by species and category | |||||
You can search by:
| ||||||
Contributing New Pathways
Create
 Create a new pathway page | Suggest
 Add a pathway to the wish list | |||||
Sample Pathway Pages
Sandbox
 Play with the editor tools |
Check out the following pages:
For more information see the Help pages | |||||
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Today's Featured Pathway
Fibrin complement receptor 3 signaling (Homo sapiens)
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/8/8e/WP4136_38964.svg:
Status:1
Message:Exception in thread "main" java.lang.NullPointerException
at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
at org.pathvisio.core.Engine.importPathway(Unknown Source)
at org.pathvisio.core.util.Converter.main(Unknown Source)
Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/8/8e/WP4136_38964.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
- 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
- 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
- 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
- 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
- 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'Fibrin compleme...', 'https://classic...', 'Fibrin compleme...', 'center', 'pwthumb', '300')
- 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4136', '300', 'center', 'Fibrin compleme...', 'pathway', 'Fibrin compleme...')
- 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
- 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPTemplateFrame_DOM))
- 8 /var/www/wikipathways/includes/parser/Parser.php(2986): PPFrame_DOM->expand(Object(PPNode_DOM))
- 9 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
- 10 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
- 11 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{{Template:Toda...')
- 12 /var/www/wikipathways/includes/parser/Parser.php(439): Parser->internalParse('{{Template:Toda...')
- 13 /var/www/wikipathways/wpi/extensions/PathwayOfTheDay/PathwayOfTheDay.php(60): Parser->recursiveTagParse('{{Template:Toda...')
- 14 [internal function]: getPathwayOfTheDay(Object(Parser), 'Wednesday 29 Ma...', 'Curation:Featur...', 'true')
- 15 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getPathwayOfThe...', Array)
- 16 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
- 17 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
- 18 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('__NOEDITSECTION...')
- 19 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('__NOEDITSECTION...')
- 20 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('__NOEDITSECTION...', Object(Title), Object(ParserOptions), true, true, 38965)
- 21 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('__NOEDITSECTION...', Object(Title), true, true)
- 22 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('__NOEDITSECTION...', Object(Title), true)
- 23 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('__NOEDITSECTION...')
- 24 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
- 25 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
- 26 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
- 27 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
- 28 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
- 29 {main}
Latest edits
| Today | |
 | Cytokine-cytokine receptor interaction (Homo sapiens) by Eric Weitz |
Latest discussions
No recent changes more...Forum
New!
- WikiPathways biotransformation pathways described in Drug Discovery Today
- CIRM partners with WikiPathways
- 2 new species supported! (see all 21)
- Ongoing: Google Summer of Code 2010!.
- PLoS ONE article on WikiPathways Web Services.
- 100s of new inferred pathways!
Community Interest
Portals within WikiPathways for communities with focused pathway interests:
- CIRM stem cell pathways
- Micronutrient initiative nutrition pathways
- GenMAPP analysis pathways
- BiGCaT contributed pathways
Want to start your own Portal? Contact us!
Statistics
- There are 3170 pathways
- Number of pathways (and unique genes) per species:
| Acetobacterium woodii: | 1 | (0) |
| Anopheles gambiae: | 20 | (400) |
| Arabidopsis thaliana: | 94 | (960) |
| Bacillus subtilis: | 3 | (14) |
| Beta vulgaris: | 1 | (25) |
| Brassica napus: | 2 | (162) |
| Bos taurus: | 273 | (3739) |
| Caenorhabditis elegans: | 65 | (827) |
| Canis familiaris: | 112 | (2857) |
| Caulobacter vibrioides: | 1 | (0) |
| Danio rerio: | 103 | (2664) |
| Daphnia magna: | 2 | (0) |
| Daphnia pulex: | 1 | (31) |
| Drosophila melanogaster: | 34 | (541) |
| Escherichia coli: | 14 | (83) |
| Equus caballus: | 12 | (200) |
| Gallus gallus: | 100 | (2106) |
| Glycine max: | 1 | (0) |
| Gibberella zeae: | 2 | (0) |
| Homo sapiens: | 1495 | (9747) |
| Hordeum vulgare: | 1 | (9) |
| Mus musculus: | 237 | (5107) |
| Mycobacterium tuberculosis: | 16 | (141) |
| Oryza sativa: | 68 | (535) |
| Ovis aries: | 1 | (0) |
| Pan troglodytes: | 115 | (2948) |
| Populus trichocarpa: | 5 | (0) |
| Rattus norvegicus: | 175 | (3796) |
| Saccharomyces cerevisiae: | 137 | (834) |
| Solanum lycopersicum: | 7 | (5) |
| Sus scrofa: | 10 | (97) |
| Triticum aestivum: | 1 | (0) |
| Vitis vinifera: | 1 | (0) |
| Zea mays: | 59 | (31) |
| Plasmodium falciparum: | 1 | (0) |
|}
