Help:Editing Pathways
From WikiPathways
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| - | <h2 class="frontPagePanel | + | <h2 class="frontPagePanel yellowFg">Editing Pathways</h2> |
| - | <font size=2>In addition to editing the text fields on a given ''Pathway Page'', this wiki also | + | <font size=2>In addition to editing the text fields on a given [[:Help:Viewing Pathways|''Pathway Page'']], this wiki also supports the ability to edit the pathway itself! Click on ''Edit pathway'' on any ''Pathway Page'' and a webstart version of the PathVisio program will open with the current pathway loaded. You can then add, edit or delete content from the pathway. When you save, updated versions of the images, controlled text, and data files are generated and are immediately available. |
Try it out in the [[:Pathway:Human:Sandbox|Sandbox pathway]]!</font> | Try it out in the [[:Pathway:Human:Sandbox|Sandbox pathway]]!</font> | ||
| - | <h4>Editing with PathVisio webstart</h4> | + | <h4>Editing the pathway image with PathVisio webstart</h4> |
<font size=2>Pathway editing for WikiPathways is done in a webstart version of [http://wiki.bigcat.unimaas.nl/pathvisio/Main_Page PathVisio]. PathVisio supports a number of common drawing tools, as well as an interface for linking objects on pathways to an underlying gene database. For detailed instructions on how to use the PathVisio program please refer to [http://wiki.bigcat.unimaas.nl/pathvisio/Help PathVisio Help] and [http://wiki.bigcat.unimaas.nl/pathvisio/PathVisio_FAQ PathVisio FAQ].</font> | <font size=2>Pathway editing for WikiPathways is done in a webstart version of [http://wiki.bigcat.unimaas.nl/pathvisio/Main_Page PathVisio]. PathVisio supports a number of common drawing tools, as well as an interface for linking objects on pathways to an underlying gene database. For detailed instructions on how to use the PathVisio program please refer to [http://wiki.bigcat.unimaas.nl/pathvisio/Help PathVisio Help] and [http://wiki.bigcat.unimaas.nl/pathvisio/PathVisio_FAQ PathVisio FAQ].</font> | ||
| - | <h4> | + | <h4>Editing text fields</h4> |
| - | <font size=2> | + | <font size=2>Text fields on ''Pathway Page'' is edited like any other text on a wiki. Please refer to the [http://meta.wikimedia.org/wiki/Help:Wikitext WikiMedia] website for details on formatting.</font> |
| - | < | + | <h5>Description</h5> |
| + | <font size=2>Each ''Pathway Page'' includes a '''Description''' section, which contains information about the biological process described in the pathway. The ''Description'' can be edited by clicking the Edit link to the right of the Description section.</font> | ||
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| + | <h5>Bibliography</h5> | ||
<font size=2>Each ''Pathway Page'' includes a '''Bibliography''' section, designed to hold reference information relevant to the pathway. When editing a pathway, any references to publications, textbooks and websites can be added to this section by clicking the ''Edit'' link next to the '''Bibliography''' section. Details on how to incorporate literature references can be found [[:Help:LiteratureReferences|here]].</font> | <font size=2>Each ''Pathway Page'' includes a '''Bibliography''' section, designed to hold reference information relevant to the pathway. When editing a pathway, any references to publications, textbooks and websites can be added to this section by clicking the ''Edit'' link next to the '''Bibliography''' section. Details on how to incorporate literature references can be found [[:Help:LiteratureReferences|here]].</font> | ||
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| + | <h5>Categories</h5> | ||
| + | <font size=2>Categories | ||
| + | Each pathway is categorized into one or several categories, listed under ''Categories''. The category assignment can be edited or new categories added to the pathway by clicking the Edit link to the right of the Categories section.</font> | ||
<p><font size=2>[[:Help:Contents|Return to Help Contents]]</font></p> | <p><font size=2>[[:Help:Contents|Return to Help Contents]]</font></p> | ||
Revision as of 22:45, 26 April 2007
Editing Pathways
In addition to editing the text fields on a given Pathway Page, this wiki also supports the ability to edit the pathway itself! Click on Edit pathway on any Pathway Page and a webstart version of the PathVisio program will open with the current pathway loaded. You can then add, edit or delete content from the pathway. When you save, updated versions of the images, controlled text, and data files are generated and are immediately available. Try it out in the Sandbox pathway!
Editing the pathway image with PathVisio webstart
Pathway editing for WikiPathways is done in a webstart version of PathVisio. PathVisio supports a number of common drawing tools, as well as an interface for linking objects on pathways to an underlying gene database. For detailed instructions on how to use the PathVisio program please refer to PathVisio Help and PathVisio FAQ.
Editing text fields
Text fields on Pathway Page is edited like any other text on a wiki. Please refer to the WikiMedia website for details on formatting.
Description
Each Pathway Page includes a Description section, which contains information about the biological process described in the pathway. The Description can be edited by clicking the Edit link to the right of the Description section.
Bibliography
Each Pathway Page includes a Bibliography section, designed to hold reference information relevant to the pathway. When editing a pathway, any references to publications, textbooks and websites can be added to this section by clicking the Edit link next to the Bibliography section. Details on how to incorporate literature references can be found here.
Categories
Categories Each pathway is categorized into one or several categories, listed under Categories. The category assignment can be edited or new categories added to the pathway by clicking the Edit link to the right of the Categories section.
