Welcome to WikiPathways BETA
WikiPathways is an open, public platform dedicated to the curation of biological pathways by and for the scientific community. More about WikiPathways...
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Today's Featured Pathway
GABA metabolism (aka GHB) (Homo sapiens) invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/5/5d/WP4157_85033.svg:
Status:1
Message:Exception in thread "main" java.lang.NullPointerException
at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source)
at org.pathvisio.core.Engine.importPathway(Unknown Source)
at org.pathvisio.core.util.Converter.main(Unknown Source)
Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/5/5d/WP4157_85033.svg" 2>&1 ' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255
Stack trace:
- 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
- 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
- 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
- 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
- 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'GABA metabolism...', 'https://classic...', 'GABA metabolism...', 'center', 'pwthumb', '300')
- 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP4157', '300', 'center', 'GABA metabolism...', 'pathway', 'GABA metabolism...')
- 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
- 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPTemplateFrame_DOM))
- 8 /var/www/wikipathways/includes/parser/Parser.php(2986): PPFrame_DOM->expand(Object(PPNode_DOM))
- 9 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
- 10 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
- 11 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{{Template:Toda...')
- 12 /var/www/wikipathways/includes/parser/Parser.php(439): Parser->internalParse('{{Template:Toda...')
- 13 /var/www/wikipathways/wpi/extensions/PathwayOfTheDay/PathwayOfTheDay.php(60): Parser->recursiveTagParse('{{Template:Toda...')
- 14 [internal function]: getPathwayOfTheDay(Object(Parser), 'Wednesday 3 Jul...', 'Curation:Featur...', 'true')
- 15 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getPathwayOfThe...', Array)
- 16 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
- 17 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
- 18 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('__NOEDITSECTION...')
- 19 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('__NOEDITSECTION...')
- 20 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('__NOEDITSECTION...', Object(Title), Object(ParserOptions), true, true, 85147)
- 21 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('__NOEDITSECTION...', Object(Title), true, true)
- 22 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('__NOEDITSECTION...', Object(Title), true)
- 23 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('__NOEDITSECTION...')
- 24 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
- 25 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
- 26 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
- 27 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
- 28 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
- 29 {main}
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Statistics
- There are 3180 pathways
- Number of pathways (and unique genes) per species:
Acetobacterium woodii:
| 1
| (0)
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Anopheles gambiae:
| 18
| (400)
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Arabidopsis thaliana:
| 94
| (960)
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Bacillus subtilis:
| 3
| (14)
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Beta vulgaris:
| 1
| (25)
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Brassica napus:
| 2
| (162)
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Bos taurus:
| 273
| (3739)
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Caenorhabditis elegans:
| 65
| (827)
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Canis familiaris:
| 112
| (2857)
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Caulobacter vibrioides:
| 1
| (0)
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Danio rerio:
| 103
| (2666)
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Daphnia magna:
| 2
| (0)
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Daphnia pulex:
| 1
| (31)
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Drosophila melanogaster:
| 34
| (541)
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Escherichia coli:
| 14
| (83)
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Equus caballus:
| 12
| (200)
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Gallus gallus:
| 100
| (2106)
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Glycine max:
| 1
| (0)
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Gibberella zeae:
| 2
| (0)
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Homo sapiens:
| 1507
| (9872)
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Hordeum vulgare:
| 1
| (9)
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Mus musculus:
| 237
| (5107)
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Mycobacterium tuberculosis:
| 16
| (141)
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Oryza sativa:
| 68
| (535)
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Ovis aries:
| 1
| (0)
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Pan troglodytes:
| 115
| (2948)
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Populus trichocarpa:
| 5
| (0)
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Rattus norvegicus:
| 175
| (3796)
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Saccharomyces cerevisiae:
| 137
| (824)
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Solanum lycopersicum:
| 7
| (5)
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Sus scrofa:
| 10
| (97)
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Triticum aestivum:
| 1
| (0)
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Vitis vinifera:
| 1
| (0)
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Zea mays:
| 59
| (31)
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Plasmodium falciparum:
| 1
| (0)
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