Download Pathways
From WikiPathways
(Difference between revisions)
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| - | <font size=4>'''Current version: [http://data.wikipathways.org/ | + | <font size=4>'''Current version: [http://data.wikipathways.org/20181010/ 20181010 (10 October 2018)]'''</font> |
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{|class="prettytable" | {|class="prettytable" | ||
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| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Bos_taurus.zip Bos taurus] |
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Canis_familiaris.zip Canis familiaris] |
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Danio_rerio.zip Danio rerio] |
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Equus_caballus.zip Equus caballus] |
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Gallus_gallus.zip Gallus gallus] |
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Homo_sapiens.zip Homo sapiens] |
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Mus_musculus.zip Mus musculus] |
|- | |- | ||
| - | |align="center"|{{#imgLink:Bos_taurus.jpg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Bos_taurus.jpg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Bos_taurus.zip|Bos taurus}} |
| - | |align="center"|{{#imgLink:Canis_familiaris.jpeg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Canis_familiaris.jpeg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Canis_familiaris.zip|Canis familiaris}} |
| - | |align="center"|{{#imgLink:Danio_rerio.jpg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Danio_rerio.jpg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Danio_rerio.zip|Danio rerio}} |
| - | |align="center"|{{#imgLink:Equus_caballus.jpg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Equus_caballus.jpg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Equus_caballus.zip|Equus caballus}} |
| - | |align="center"|{{#imgLink:Gallus_gallus.jpeg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Gallus_gallus.jpeg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Gallus_gallus.zip|Gallus gallus}} |
| - | |align="center"|{{#imgLink:Human_baby.jpeg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Human_baby.jpeg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Homo_sapiens.zip|Homo sapiens}} |
| - | |align="center"|{{#imgLink:House_Mouse.jpg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:House_Mouse.jpg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Mus_musculus.zip|Mus musculus}} |
|} | |} | ||
{|class="prettytable" | {|class="prettytable" | ||
|- | |- | ||
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Pan_troglodytes.zip Pan troglodytes] |
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Rattus_norvegicus.zip Rattus norvegicus] |
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Sus_scrofa.zip Sus scrofa] |
|- | |- | ||
| - | |align="center"|{{#imgLink:Pan_Troglodytes.jpg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Pan_Troglodytes.jpg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Pan_troglodytes.zip|Pan troglodytes}} |
| - | |align="center"|{{#imgLink:Rat.jpeg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Rat.jpeg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Rattus_norvegicus.zip |Rattus norvegicus}} |
| - | |align="center"|{{#imgLink:Sus_scrofa.jpeg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Sus_scrofa.jpeg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Sus_scrofa.zip|Sus scrofa}} |
|} | |} | ||
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{|class="prettytable" | {|class="prettytable" | ||
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| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Anopheles_gambiae.zip Anopheles gambiae] |
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Caenorhabditis_elegans.zip Caenorhabditis elegans] |
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Drosophila_melanogaster.zip Drosophila melanogaster] |
|- | |- | ||
| - | |align="center"|{{#imgLink:Anopheles_gambiae.jpg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Anopheles_gambiae.jpg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Anopheles_gambiae.zip|Anopheles gambiae}} |
| - | |align="center"|{{#imgLink:Celegans.jpeg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Celegans.jpeg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Caenorhabditis_elegans.zip|Caenorhabditis elegans}} |
| - | |align="center"|{{#imgLink:Drosophila-melanogaster.jpg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Drosophila-melanogaster.jpg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Drosophila_melanogaster.zip|Drosophila melanogaster}} |
|} | |} | ||
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{|class="prettytable" | {|class="prettytable" | ||
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| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Arabidopsis_thaliana.zip Arabidopsis thaliana] |
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Hordeum_vulgare.zip Hordeum vulgare] |
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Oryza_sativa.zip Oryza sativa] |
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Populus_trichocarpa.zip Populus trichocarpa] |
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Solanum_lycopersicum.zip Solanum lycopersicum] |
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Zea_mays.zip Zea mays] |
| - | <!-- ![http://data.wikipathways.org/ | + | <!-- ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Beta_vulgaris.zip Beta vulgaris] --> |
|- | |- | ||
| - | |align="center"|{{#imgLink:Arabidopsis_thaliana.jpg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Arabidopsis_thaliana.jpg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Arabidopsis_thaliana.zip|Arabidopsis thaliana}} |
| - | |align="center"|{{#imgLink:Hordeum_vulgare.jpeg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Hordeum_vulgare.jpeg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Hordeum_vulgare.zip|Hordeum vulgare}} |
| - | |align="center"|{{#imgLink:Oryza_sativa.jpeg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Oryza_sativa.jpeg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Oryza_sativa.zip|Oryza sativa}} |
| - | |align="center"|{{#imgLink:Populus_trichocarpa.jpeg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Populus_trichocarpa.jpeg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Populus_trichocarpa.zip|Populus trichocarpa}} |
| - | |align="center"|{{#imgLink:Solanum_lycopersicum.jpeg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Solanum_lycopersicum.jpeg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Solanum_lycopersicum.zip|Solanum lycopersicum}} |
| - | |align="center"|{{#imgLink:Zea_mays.jpeg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Zea_mays.jpeg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Zea_mays.zip|Zea mays}} |
| - | <!-- |align="center"|{{#imgLink:Beta_vulgaris.jpeg|120|center||external|http://data.wikipathways.org/ | + | <!-- |align="center"|{{#imgLink:Beta_vulgaris.jpeg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Beta_vulgaris.zip|Beta vulgaris}} --> |
|} | |} | ||
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{|class="prettytable" | {|class="prettytable" | ||
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| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Gibberella_zeae.zip Gibberella zeae] |
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Saccharomyces_cerevisiae.zip Saccharomyces cerevisiae] |
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Plasmodium_falciparum.zip Plasmodium falciparum] |
|- | |- | ||
| - | |align="center"|{{#imgLink:Giberella_zeae.jpg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Giberella_zeae.jpg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Gibberella_zeae.zip|Gibberella zeae}} |
| - | |align="center"|{{#imgLink:Yeast.jpg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Yeast.jpg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Saccharomyces_cerevisiae.zip|Saccharomyces cerevisiae}} |
| - | |align="center"|{{#imgLink:Plasmodium_falciparum.jpg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Plasmodium_falciparum.jpg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Plasmodium_falciparum.zip|Plasmodium falciparum}} |
|} | |} | ||
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{|class="prettytable" | {|class="prettytable" | ||
|- | |- | ||
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Bacillus_subtilis.zip Bacillus subtilis] |
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Escherichia_coli.zip E.coli] |
| - | ![http://data.wikipathways.org/ | + | ![http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Mycobacterium_tuberculosis.zip Mycobacterium tuberculosis] |
|- | |- | ||
| - | |align="center"|{{#imgLink:Bacillus_subtilis.jpeg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Bacillus_subtilis.jpeg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Bacillus_subtilis.zip|Bacillus subtilis}} |
| - | |align="center"|{{#imgLink:Ecoli.jpg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:Ecoli.jpg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Escherichia_coli.zip|E.coli}} |
| - | |align="center"|{{#imgLink:MycobacteriumTuberculosis.jpg|120|center||external|http://data.wikipathways.org/ | + | |align="center"|{{#imgLink:MycobacteriumTuberculosis.jpg|120|center||external|http://data.wikipathways.org/20181010/gpml/wikipathways-20181010-gpml-Mycobacterium_tuberculosis.zip|Mycobacterium tuberculosis}} |
|} | |} | ||
Revision as of 16:35, 10 October 2018
Versioned Releases
Each month we release an updated set of pathways in various data and image formats. These pathways have been reviewed and tagged as approved, and are considered ready for analysis and data overlays.
Current version: 20181010 (10 October 2018)
Vertebrates
| Bos taurus | Canis familiaris | Danio rerio | Equus caballus | Gallus gallus | Homo sapiens | Mus musculus |
|---|---|---|---|---|---|---|
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| Pan troglodytes | Rattus norvegicus | Sus scrofa |
|---|---|---|
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Invertebrates
| Anopheles gambiae | Caenorhabditis elegans | Drosophila melanogaster |
|---|---|---|
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Plants
| Arabidopsis thaliana | Hordeum vulgare | Oryza sativa | Populus trichocarpa | Solanum lycopersicum | Zea mays |
|---|---|---|---|---|---|
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Eukaryotic microorganisms
| Gibberella zeae | Saccharomyces cerevisiae | Plasmodium falciparum |
|---|---|---|
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Bacteria
| Bacillus subtilis | E.coli | Mycobacterium tuberculosis |
|---|---|---|
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Other Collections
- Prior monthly releases
- Daily curated releases
- Reactome Human Collection
- Gene lists per pathway (GMT)
- Pathway image files (SVG)
- Linked data files (RDF)
- Database index files (index)
