Template:PathwayPage

From WikiPathways

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Line 15: Line 15:
=== Bibliography ===
=== Bibliography ===
 +
== Download files ==
 +
=== Image ===
 +
* [{{SERVER}}{{SCRIPTPATH}}/wpi/wpi.php?action=downloadFile&pwTitle={{FULLPAGENAMEE}}&type=svg svg]
 +
* [{{SERVER}}{{SCRIPTPATH}}/wpi/wpi.php?action=downloadFile&pwTitle={{FULLPAGENAMEE}}&type=png png]
 +
=== Data ===
 +
* [{{SERVER}}{{SCRIPTPATH}}/wpi/wpi.php?action=downloadFile&pwTitle={{FULLPAGENAMEE}}&type=gpml PathVisio (gpml)]
 +
To obtain the a pathway file that can be used in [http://www.genmapp.org GenMAPP], open the pathway in PathVisio (by clicking ''Edit pathway'' below the image) and go to ''File->export'' to save the pathway as .mapp file.
== Pathway Info ==
== Pathway Info ==
Line 23: Line 30:
=== DataNodes ===
=== DataNodes ===
{{CheckAvailable|data={{ #pathwayInfo: {{PAGENAME}}|datanodes}}|msg=''No DataNodes in GPML file''}}
{{CheckAvailable|data={{ #pathwayInfo: {{PAGENAME}}|datanodes}}|msg=''No DataNodes in GPML file''}}
-
 
-
== Download files ==
 
-
* '''Image'''
 
-
** [{{SERVER}}{{SCRIPTPATH}}/wpi/wpi.php?action=downloadFile&pwTitle={{FULLPAGENAMEE}}&type=svg svg]
 
-
** [{{SERVER}}{{SCRIPTPATH}}/wpi/wpi.php?action=downloadFile&pwTitle={{FULLPAGENAMEE}}&type=png png]
 
-
* '''Data'''
 
-
** [{{SERVER}}{{SCRIPTPATH}}/wpi/wpi.php?action=downloadFile&pwTitle={{FULLPAGENAMEE}}&type=gpml PathVisio (gpml)]
 
-
** GenMAPP (mapp) ''NOT SUPPORTED YET''
 

Revision as of 00:46, 14 April 2007

<analytics uacct="UA-1605246-1" ></analytics>

Contents

[[{{{imagePage}}}|none|thumb|Error: exception 'MWException' with message 'LocalFile constructor given bogus title.' in /var/www/wikipathways/includes/filerepo/LocalFile.php:125

Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/imageSize.php(26): LocalFile->__construct(NULL, Object(LocalRepo))
  2. 1 [internal function]: getSize(Object(Parser), '{{{imagePage}}}', '800')
  3. 2 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getSize', Array)
  4. 3 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  5. 4 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  6. 5 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('<analytics uacc...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('<analytics uacc...')
  8. 7 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<analytics uacc...', Object(Title), Object(ParserOptions), true, true, 2276)
  9. 8 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<analytics uacc...', Object(Title), true, true)
  10. 9 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<analytics uacc...', Object(Title), true)
  11. 10 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<analytics uacc...')
  12. 11 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  13. 12 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  14. 13 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  15. 14 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  16. 15 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  17. 16 {main}| Edit pathway]]

[edit]

Description

[edit]

Bibliography

Download files

Image

Data

To obtain the a pathway file that can be used in GenMAPP, open the pathway in PathVisio (by clicking Edit pathway below the image) and go to File->export to save the pathway as .mapp file.

Pathway Info

This information is generated from the GPML file

Comments

Error: exception 'Exception' with message 'Couldn't parse pathway identifier from title PathwayPage' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:300 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/pathwayInfo.php(26): Pathway::newFromTitle('PathwayPage')
  2. 1 [internal function]: getPathwayInfoText(Object(Parser), 'PathwayPage', 'comments')
  3. 2 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getPathwayInfoT...', Array)
  4. 3 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  5. 4 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(1239): PPFrame_DOM->expand(Object(DOMElement), 4)
  6. 5 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(1247): PPTemplateFrame_DOM->getNamedArgument('data')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(3201): PPTemplateFrame_DOM->getArgument('data')
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(934): Parser->argSubstitution(Array, Object(PPTemplateFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2760): PPFrame_DOM->expand(Object(PPNode_DOM))
  10. 9 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPTemplateFrame_DOM))
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(2986): PPFrame_DOM->expand(Object(PPNode_DOM))
  12. 11 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  13. 12 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  14. 13 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('<analytics uacc...')
  15. 14 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('<analytics uacc...')
  16. 15 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<analytics uacc...', Object(Title), Object(ParserOptions), true, true, 2276)
  17. 16 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<analytics uacc...', Object(Title), true, true)
  18. 17 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<analytics uacc...', Object(Title), true)
  19. 18 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<analytics uacc...')
  20. 19 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  21. 20 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  22. 21 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  23. 22 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  24. 23 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  25. 24 {main}

DataNodes

Error: exception 'Exception' with message 'Couldn't parse pathway identifier from title PathwayPage' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:300 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/pathwayInfo.php(26): Pathway::newFromTitle('PathwayPage')
  2. 1 [internal function]: getPathwayInfoText(Object(Parser), 'PathwayPage', 'datanodes')
  3. 2 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getPathwayInfoT...', Array)
  4. 3 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  5. 4 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(1239): PPFrame_DOM->expand(Object(DOMElement), 4)
  6. 5 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(1247): PPTemplateFrame_DOM->getNamedArgument('data')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(3201): PPTemplateFrame_DOM->getArgument('data')
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(934): Parser->argSubstitution(Array, Object(PPTemplateFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2760): PPFrame_DOM->expand(Object(PPNode_DOM))
  10. 9 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPTemplateFrame_DOM))
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(2986): PPFrame_DOM->expand(Object(PPNode_DOM))
  12. 11 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  13. 12 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  14. 13 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('<analytics uacc...')
  15. 14 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('<analytics uacc...')
  16. 15 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('<analytics uacc...', Object(Title), Object(ParserOptions), true, true, 2276)
  17. 16 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('<analytics uacc...', Object(Title), true, true)
  18. 17 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('<analytics uacc...', Object(Title), true)
  19. 18 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('<analytics uacc...')
  20. 19 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  21. 20 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  22. 21 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  23. 22 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  24. 23 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  25. 24 {main}
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