Template:PathwayPage

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[[{{{imagePage}}}|none|thumb|Error: exception 'MWException' with message 'LocalFile constructor given bogus title.' in /var/www/wikipathways/includes/filerepo/LocalFile.php:125

Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/imageSize.php(26): LocalFile->__construct(NULL, Object(LocalRepo))
  2. 1 [internal function]: getSize(Object(Parser), '{{{imagePage}}}', '800')
  3. 2 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getSize', Array)
  4. 3 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  5. 4 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  6. 5 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('<analytics uacc...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('<analytics uacc...')
  8. 7 /var/www/wikipathways/includes/Article.php(3406): Parser->parse('<analytics uacc...', Object(Title), Object(ParserOptions), true, true, 2590)
  9. 8 /var/www/wikipathways/includes/Article.php(865): Article->outputWikiText('<analytics uacc...')
  10. 9 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  11. 10 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  12. 11 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  13. 12 {main}| Edit pathway]]

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Description

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Bibliography

For help on adding bibliography see Help:LiteratureReferences

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Image

Data

To obtain the a pathway file that can be used in GenMAPP, open the pathway in PathVisio (by clicking Edit pathway below the image) and go to File->export to save the pathway as .mapp file.

Pathway Info

This information is generated from the GPML file

Comments

Error: exception 'Exception' with message 'Couldn't parse pathway identifier from title PathwayPage' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:300 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/pathwayInfo.php(26): Pathway::newFromTitle('PathwayPage')
  2. 1 [internal function]: getPathwayInfoText(Object(Parser), 'PathwayPage', 'comments')
  3. 2 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getPathwayInfoT...', Array)
  4. 3 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  5. 4 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(1239): PPFrame_DOM->expand(Object(DOMElement), 4)
  6. 5 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(1247): PPTemplateFrame_DOM->getNamedArgument('data')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(3201): PPTemplateFrame_DOM->getArgument('data')
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(934): Parser->argSubstitution(Array, Object(PPTemplateFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2760): PPFrame_DOM->expand(Object(PPNode_DOM))
  10. 9 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPTemplateFrame_DOM))
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(2986): PPFrame_DOM->expand(Object(PPNode_DOM))
  12. 11 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  13. 12 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  14. 13 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('<analytics uacc...')
  15. 14 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('<analytics uacc...')
  16. 15 /var/www/wikipathways/includes/Article.php(3406): Parser->parse('<analytics uacc...', Object(Title), Object(ParserOptions), true, true, 2590)
  17. 16 /var/www/wikipathways/includes/Article.php(865): Article->outputWikiText('<analytics uacc...')
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}

DataNodes

Error: exception 'Exception' with message 'Couldn't parse pathway identifier from title PathwayPage' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:300 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/pathwayInfo.php(26): Pathway::newFromTitle('PathwayPage')
  2. 1 [internal function]: getPathwayInfoText(Object(Parser), 'PathwayPage', 'datanodes')
  3. 2 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getPathwayInfoT...', Array)
  4. 3 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  5. 4 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(1239): PPFrame_DOM->expand(Object(DOMElement), 4)
  6. 5 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(1247): PPTemplateFrame_DOM->getNamedArgument('data')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(3201): PPTemplateFrame_DOM->getArgument('data')
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(934): Parser->argSubstitution(Array, Object(PPTemplateFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2760): PPFrame_DOM->expand(Object(PPNode_DOM))
  10. 9 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPTemplateFrame_DOM))
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(2986): PPFrame_DOM->expand(Object(PPNode_DOM))
  12. 11 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  13. 12 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  14. 13 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('<analytics uacc...')
  15. 14 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('<analytics uacc...')
  16. 15 /var/www/wikipathways/includes/Article.php(3406): Parser->parse('<analytics uacc...', Object(Title), Object(ParserOptions), true, true, 2590)
  17. 16 /var/www/wikipathways/includes/Article.php(865): Article->outputWikiText('<analytics uacc...')
  18. 17 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  19. 18 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  20. 19 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  21. 20 {main}
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