Class I peroxisomal membrane protein import (Homo sapiens)

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2-4, 8, 9, 11...1, 5, 8, 10-13, 16...5, 7-9, 11...1, 29, 374, 8, 9, 13, 22peroxisomal membranecytosolperoxisomal matrixALDH3A2-2 PEX11B PEX3ABCD2 ABCD3 FIS1 PEX2 ALDH3A2-2 ABCD2 PXMP2 PEX19:PEX3PEX12 PXMP4 PEX26 PXMP4 PEX2 ATAD1 ABCD2 ACBD5 GDAP1 PEX19 PEX11B PXMP4 PEX26 PXMP2 PEX11B PEX14 PEX12 PEX14 PEX3 PEX26 SLC25A17 PEX13 PEX19:class I PMPPEX19 PEX3:PEX19:class IPMPPEX16 ATAD1 SLC25A17 ABCD1 PEX14 ABCD1 ABCD3 ATAD1 PEX11B GDAP1 PEX3GDAP1 PEX16 FIS1 GDAP1 PEX12 ALDH3A2-2 PEX13 PEX19 SLC25A17 ATAD1 ACBD5 PXMP4 ABCD2 PEX3 PEX19FIS1 PXMP2 PEX26 ACBD5 FIS1 PEX2 ALDH3A2-2 Class I PeroxisomalMembrane ProteinsABCD1 PEX3 ABCD3 ACBD5 PEX12 PEX19 PEX13 PEX16PEX14 PEX16:PEX19:PEX3PEX2 PEX16 ABCD1 ABCD3 PEX16 SLC25A17 PXMP2 PEX16 Class I PeroxisomalMembrane ProteinsPEX13 1, 5, 8, 10-13, 16...1, 5, 8, 10-13, 16...346


Description

Most peroxisomal membrane proteins (PMPs) are inserted into the peroxisomal membrane by the receptor-chaperone PEX19 and the docking receptor PEX3 (Soukupova et al. 1999, Muntau et al. 2003, Fang et al. 2004, Fujiki et al. 2006, Matsuzono and Fujiki 2006, Matsuzono et al. 2006, Pinto et al. 2006, Sato et al. 2008, Sato et al. 2010, Schmidt et al. 2010, Hattula et al. 2014, reviewed in Fujiki et al. 2014, Mayerhofer 2016). PEX19 binds the PMP as it is translated in the cytosol. Recognition of the PMP by PEX 19 appears to depend on positively charged residues in the transmembrane domain of the PMP (Costello et al. 2017). The PEX19:PMP complex then interacts with PEX3 located in the peroxisomal membrane. Through a mechanism that is not yet clear, the PMP is inserted into the peroxisomal membrane and PEX19 dissociates from PEX3. A current model involves transfer of the PMP from PEX19 to a hydrophobic region of PEX3 followed by insertion of the PMP into the membrane (Chen et al. 2014, reviewed by Giannopoulou et al. 2016). The process does not appear to require hydrolysis of ATP or GTP (Pinto et al. 2006).
Unlike other PMPs, PEX3 is inserted into the peroxisomal membrane by binding PEX19 and then docking with PEX16 (Matsuzaki and Fujiki 2008). Both PEX3 and PEX16 can also be co-translationally inserted into the endoplasmic reticulum membrane (Kim et al. 2006, Yonekawa et al. 2011, Aranovich et al. 2014, Hua et al. 2015, Mayerhofer et al. 2016). This region of the ER membrane then buds to contribute to new peroxisomes. PEX3 is also observed to insert into the mitochondrial outer membrane (Sugiura et al. 2017). Regions of the ER membrane and mitochondrial outer membrane are then released to form pre-peroxisomal vesicles which fuse to form new peroxisomes (Sugiura et al. 2017). Peroxisomes therefore appear to arise from fission of existing peroxisomes and production of new peroxisomes from precursors derived from mitochondria and the ER (Sugiura et al. 2017, reviewed in Fujiki et al. 2014, Hua and Kim 2016). View original pathway at Reactome.

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Pathway is converted from Reactome ID: 9603798
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Reactome version: 74
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Reactome Author: May, Bruce

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Bibliography

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History

CompareRevisionActionTimeUserComment
114795view16:29, 25 January 2021ReactomeTeamReactome version 75
113239view11:30, 2 November 2020ReactomeTeamReactome version 74
112803view17:59, 9 October 2020DeSlOntology Term : 'cellular trafficking cycle pathway' added !
112753view16:15, 9 October 2020ReactomeTeamNew pathway

External references

DataNodes

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NameTypeDatabase referenceComment
ABCD1 ProteinP33897 (Uniprot-TrEMBL)
ABCD2 ProteinQ9UBJ2 (Uniprot-TrEMBL)
ABCD3 ProteinP28288 (Uniprot-TrEMBL)
ACBD5 ProteinQ5T8D3 (Uniprot-TrEMBL)
ALDH3A2-2 ProteinP51648-2 (Uniprot-TrEMBL)
ATAD1 ProteinQ8NBU5 (Uniprot-TrEMBL)
Class I Peroxisomal Membrane ProteinsComplexR-HSA-9603783 (Reactome)
Class I Peroxisomal Membrane ProteinsComplexR-HSA-9603802 (Reactome)
FIS1 ProteinQ9Y3D6 (Uniprot-TrEMBL)
GDAP1 ProteinQ8TB36 (Uniprot-TrEMBL)
PEX11B ProteinO96011 (Uniprot-TrEMBL)
PEX12 ProteinO00623 (Uniprot-TrEMBL)
PEX13 ProteinQ92968 (Uniprot-TrEMBL)
PEX14 ProteinO75381 (Uniprot-TrEMBL)
PEX16 ProteinQ9Y5Y5 (Uniprot-TrEMBL)
PEX16:PEX19:PEX3ComplexR-HSA-9603800 (Reactome)
PEX16ProteinQ9Y5Y5 (Uniprot-TrEMBL)
PEX19 ProteinP40855 (Uniprot-TrEMBL)
PEX19:PEX3ComplexR-HSA-9603799 (Reactome)
PEX19:class I PMPComplexR-HSA-9603787 (Reactome)
PEX19ProteinP40855 (Uniprot-TrEMBL)
PEX2 ProteinP28328 (Uniprot-TrEMBL)
PEX26 ProteinQ7Z412 (Uniprot-TrEMBL)
PEX3 ProteinP56589 (Uniprot-TrEMBL)
PEX3:PEX19:class I PMPComplexR-HSA-9603793 (Reactome)
PEX3ProteinP56589 (Uniprot-TrEMBL)
PXMP2 ProteinQ9NR77 (Uniprot-TrEMBL)
PXMP4 ProteinQ9Y6I8 (Uniprot-TrEMBL)
SLC25A17 ProteinO43808 (Uniprot-TrEMBL)

Annotated Interactions

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SourceTargetTypeDatabase referenceComment
Class I Peroxisomal Membrane ProteinsArrowR-HSA-9603775 (Reactome)
Class I Peroxisomal Membrane ProteinsR-HSA-9603804 (Reactome)
PEX16:PEX19:PEX3ArrowR-HSA-9603797 (Reactome)
PEX16:PEX19:PEX3R-HSA-9603791 (Reactome)
PEX16ArrowR-HSA-9603791 (Reactome)
PEX16R-HSA-9603797 (Reactome)
PEX19:PEX3ArrowR-HSA-9603801 (Reactome)
PEX19:PEX3R-HSA-9603797 (Reactome)
PEX19:class I PMPArrowR-HSA-9603804 (Reactome)
PEX19:class I PMPR-HSA-9603784 (Reactome)
PEX19ArrowR-HSA-9603775 (Reactome)
PEX19ArrowR-HSA-9603791 (Reactome)
PEX19R-HSA-9603801 (Reactome)
PEX19R-HSA-9603804 (Reactome)
PEX3:PEX19:class I PMPArrowR-HSA-9603784 (Reactome)
PEX3:PEX19:class I PMPR-HSA-9603775 (Reactome)
PEX3ArrowR-HSA-9603775 (Reactome)
PEX3ArrowR-HSA-9603791 (Reactome)
PEX3R-HSA-9603784 (Reactome)
PEX3R-HSA-9603801 (Reactome)
R-HSA-9603775 (Reactome) The PEX19:PEX3:peroxisomal membrane protein complex dissociates, yielding cytosolic PEX19, membrane-bound PEX3, and the peroxisomal membrane protein inserted in the peroxisomal membrane (Fang et al. 2004, Matsuzono and Fujiki 2006, Schueller et al. 2010, Chen et al. 2014, reviewed in Fujiki et al. 2006). The mechanism of the reaction is not fully characterized. One current model posits the transfer of the peroxisomal membrane protein from a hydrophobic region of PEX19 to a hydrophobic region of PEX3 followed by intervention in the membrane layer to release the peroxisomal membrane protein into the membrane bilayer (Chen et al. 2014). An amphipathic helical segment in the N-terminal region of PEX19 may compete with the peroxisomal membrane protein for a binding site in the C-terminal region of PEX19 and thereby participate in the release of the peroxisomal membrane protein from PEX19 (Schueller et al. 2010).
R-HSA-9603784 (Reactome) Cytosolic PEX19 bound to a peroxisomal membrane protein binds PEX3 which is located in the peroxisomal membrane and serves as a docking receptor for PEX19 (Soukupova et al. 1999, Muntau et al. 2003, Fang et al. 2004, Matsuzono and Fujiki 2006, Matsuzono et al. 2006, Pinto et al. 2006, Sato et al. 2008, Sato et al. 2010, Schmidt et al. 2010, Hattula et al. 2014, reviewed in Fujiki et al. 2006). PEX19 bound to a cargo protein has much higher affinity for PEX3 than PEX19 alone does (Pinto et al. 2006). The insertion of the peroxisomal membrane protein into the membrane does not require ATP hydrolysis or GTP hydrolysis (Pinto et al. 2006). The N-terminal region of PEX19 binds a hydrophobic groove and acidic cluster on the surface of PEX3 (Schmidt et al. 2010, Schmidt et al. 2012) at the cytosolic apex of the PEX3 spheroid (Sato et al. 2010).
R-HSA-9603791 (Reactome) The PEX16:PEX19:PEX3 complex dissociates, yielding cytosolic PEX19 and PEX3 and PEX16 inserted in the membrane (inferred from human PEX16, human PEX19, and rat PEX3).
R-HSA-9603797 (Reactome) The cytosolic PEX19:PEX3 complex binds PEX16 located in the peroxisomal membrane (inferred from human PEX19, human PEX16, and rat Pex3). Thus PEX16 serves as a docking factor. PEX3 is believed to be inserted in the peroxisomal membrane by this pathway and by direct co-translational insertion in the membrane of the endoplasmic reticulum that then buds to generate peroxisomes.
R-HSA-9603801 (Reactome) In the cytosol, PEX19 binds to newly translated PEX3 (inferred from human PEX19 binding rat Pex3). PEX19 binds the C-terminal region of PEX3 and the membrane targeting signal of PEX3 is located in the N-terminal region (Soukupova et al. 1999, Fransen et al. 2001, Fransen et al. 2005).
R-HSA-9603804 (Reactome) In the cytosol, PEX19 binds newly synthesized class I peroxisomal membrane proteins (Sacksteder et al. 2000, Fransen et al. 2001, Jones et al. 2004, reviewed in Fujiki et al. 2006). The C-terminal region and a conserved N-terminal helical segment of PEX19 bind to peroxisomal membrane proteins (Fransen et al. 2005, Schueller et al. 2010) and PEX19 acts both as a chaperone and as an import receptor (Jones et al. 2004). PEX19 is farnesylated (Götte et al. 1998, Sacksteder et al. 2000, Vastiau et al. 2006) and the farnesyl group is buried in a hydrophobic cavity which alters the conformation of PEX19 to yield two hydrophobic pockets involved in binding peroxisomal membrane proteins (Emmanouilidis et al. 2017). The number of positively charged amino acid residues in the transmembrane domain of the PMP appears to determine binding by PEX19 and, hence, targeting to the peroxisomal membrane protein (Costello et al. 2017).
Class I membrane proteins are inserted into the peroxisomal membrane after peroxisomal progenitors have budded from the endoplasmic reticulum (Jones et al. 2004). Human class I peroxisomal membrane proteins that are bound by PEX19 include PEX10 (Sacksteder et al. 2000), PEX11B (Fransen et al. 2005), PEX12 (Sacksteder et al. 2000, Fransen et al. 2001, Fransen et al. 2005), PEX13 (Sacksteder et al. 2000, Fransen et al. 2001, Fransen et al. 2005, Vastiau et al. 2006, Liu et al. 2016), PEX14 (Sacksteder et al. 2000, Fransen et al. 2005, Vastiau et al. 2006), PEX16 (Fransen et al. 2001, Fransen et al. 2005, Matsuzono and Fujiki 2006, Schueller et al. 2010, Yagita et al. 2013, Liu et al. 2016), ), PEX26 (Fransen et al. 2005, Matsuzono and Fujiki 2006), ABCD1 (ALDP, Mayerhofer et al. 2002, Halbach et al. 2005), ABCD2 (ALDRP, Mayerhofer et al. 2002), ABCD3 (PMP70, Sacksteder et al. 2000, Mayerhofer et al. 2002), PXMP2 (PMP22, Jones et al. 2001, Brosius et al. 2002), PXMP4 (PMP24, Pinto et al. 2006), SLC25A17 (PMP34, Sacksteder et al. 2000, Liu et al. 2016), ATAD1 (Liu et al. 2016), FIS1 (Delille and Schrader 2008), and GDAP1 (Huber et al. 2013).
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