Acetogenesis (Acetobacterium woodii)

From WikiPathways

Description

Quality Tags

Ontology Terms

Bibliography

1. Diender M, Stams AJ, Sousa DZ; ''Pathways and Bioenergetics of Anaerobic Carbon Monoxide Fermentation.''; Front Microbiol, 2015 PubMed Europe PMC Scholia

History

View all...

Compare	Revision	Action	Time	User	Comment
	120854	view	14:18, 20 January 2022	DeSl	Ontology Term : 'carbon fixation pathway' added !
	120853	view	14:16, 20 January 2022	DeSl	Added ref, updated description
	113882	view	02:17, 6 December 2020	Khanspers	Ontology Term : 'classic metabolic pathway' added !
	113587	view	12:24, 3 November 2020	Larsgw	Clarify pathway branches
	113580	view	01:11, 3 November 2020	Larsgw	Add enzymes, update acetyl-CoA->acetate reaction
	113458	view	11:53, 2 November 2020	Larsgw
	113056	view	14:43, 1 November 2020	Larsgw	Add ATP synthase
	113055	view	12:58, 1 November 2020	Larsgw	Add some protein complexes
	113054	view	23:43, 31 October 2020	Larsgw	Add main pathway metabolites
	113052	view	17:21, 31 October 2020	Larsgw	New pathway

External references

DataNodes

View all...

Name	Type	Database reference	Comment
10-Formyltetrahydrofolate	Metabolite	CHEBI:15637 (ChEBI)
5,10-Methenyltetrahydrofolate	Metabolite	CHEBI:15638 (ChEBI)
5,10-Methylenetetrahydrofolate	Metabolite	CHEBI:1989 (ChEBI)
5-Methyltetrahydrofolate	Metabolite	CHEBI:15641 (ChEBI)
ADP	Metabolite	CHEBI:456216 (ChEBI)
ATP	Metabolite	CHEBI:30616 (ChEBI)
AckA	Protein	H6LBE7 (Uniprot-TrEMBL)	acetate kinase
AcsA	Protein	H6LD21 (Uniprot-TrEMBL)	CO dehydrogenase
AcsB1	Protein	H6LD23 (Uniprot-TrEMBL)	Acetyl-CoA synthase
AcsC	Protein	H6LD19 (Uniprot-TrEMBL)	Large subunit
AcsD	Protein	H6LD18 (Uniprot-TrEMBL)	Small subunit
AcsE	Protein	H6LD20 (Uniprot-TrEMBL)	Methyl-transferase
AtpA	Protein	P50000 (Uniprot-TrEMBL)	Subunit alpha
AtpB	Protein	Q9RMB6 (Uniprot-TrEMBL)	Subunit a
AtpC	Protein	P50009 (Uniprot-TrEMBL)	Subunit epsilon
AtpD	Protein	P50002 (Uniprot-TrEMBL)	Subunit beta
AtpE	Protein	Q9RMB5 (Uniprot-TrEMBL)	Subunit c
AtpF	Protein	Q9RMB4 (Uniprot-TrEMBL)	Subunit b
AtpG	Protein	P50005 (Uniprot-TrEMBL)	Subunit gamma
AtpH	Protein	Q9RMB3 (Uniprot-TrEMBL)	Subunit delta
FchA	Protein	H6LBX5 (Uniprot-TrEMBL)	Methenyl-THF cyclohydrolase
FdhF1	Protein	H6LB59 (Uniprot-TrEMBL)
FdhF2	Protein	H6LB61 (Uniprot-TrEMBL)
Fhs1	Protein	H6LBX4 (Uniprot-TrEMBL)	Formate--tetrahydrofolate ligase
FolD	Protein	H6LBX6 (Uniprot-TrEMBL)
HSCoA	Metabolite	CHEBI:15346 (ChEBI)
HycB1	Protein	H6LB60 (Uniprot-TrEMBL)
HycB2	Protein	H6LB62 (Uniprot-TrEMBL)
HycB3	Protein	H6LB64 (Uniprot-TrEMBL)
HydA1	Protein	H6LFG3 (Uniprot-TrEMBL)
HydA2	Protein	H6LB65 (Uniprot-TrEMBL)
HydB	Protein	H6LFG4 (Uniprot-TrEMBL)
HydC	Protein	H6LFG7 (Uniprot-TrEMBL)
HydD	Protein	H6LFG5 (Uniprot-TrEMBL)
MetF	Protein	H6LBX9 (Uniprot-TrEMBL)
MetV	Protein	H6LBX8 (Uniprot-TrEMBL)
NAD(1-)	Metabolite	CHEBI:57540 (ChEBI)
NADH	Metabolite	CHEBI:16908 (ChEBI)
Oxidised ferredoxin	Metabolite	CHEBI:17908 (ChEBI)
Pta	Protein	H6LJY6 (Uniprot-TrEMBL)
Reduced ferredoxin	Metabolite	CHEBI:17513 (ChEBI)
RnfA	Protein	H6LC28 (Uniprot-TrEMBL)
RnfB	Protein	H6LC27 (Uniprot-TrEMBL)
RnfC2	Protein	H6LBX7 (Uniprot-TrEMBL)
RnfC	Protein	H6LC32 (Uniprot-TrEMBL)
RnfD	Protein	H6LC31 (Uniprot-TrEMBL)
RnfE	Protein	H6LC29 (Uniprot-TrEMBL)
RnfG	Protein	H6LC30 (Uniprot-TrEMBL)
Tetrahydrofolate	Metabolite	CHEBI:20506 (ChEBI)
acetate	Metabolite	CHEBI:30089 (ChEBI)
acetyl-CoA	Metabolite	CHEBI:15351 (ChEBI)
acetyl-phosphate	Metabolite	CHEBI:15350 (ChEBI)
carbon dioxide	Metabolite	CHEBI:16526 (ChEBI)
carbon monooxide	Metabolite	CHEBI:17245 (ChEBI)
dihydrogen	Metabolite	CHEBI:18276 (ChEBI)
formate	Metabolite	CHEBI:15740 (ChEBI)
hydrogenphosphate	Metabolite	CHEBI:43474 (ChEBI)
hydron	Metabolite	CHEBI:15378 (ChEBI)
methyl	Metabolite	CHEBI:32875 (ChEBI)

Annotated Interactions

Source	Target	Type	Database reference	Comment
acetyl-CoA	acetyl-phosphate	mim-conversion	19521 (Rhea)
acetyl-phosphate	acetate	mim-conversion	11352 (Rhea)
carbon dioxide	carbon monooxide	mim-conversion	21040 (Rhea)