Geranylgeranyldiphosphate biosynthesis II (plastidic) (Oryza sativa)

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1-7LOC_Os06g46450Dimethylallyl-PPGeranylgeranyl diphosphateEC:2.5.1.1 (Geranyl-diphosphate synthase)trans, trans-farnesyl diphosphateGeranyl-PPLOC_Os02g44780Methylerythritol phosphate pathwayEC:2.5.1.29 (Geranylgeranyl pyrophosphate synthase)LOC_Os12g17320LOC_Os08g09370Delta3-isopentenyl-PPLOC_OS01G14630LOC_Os09g33930LOC_Os07g39270EC:2.5.1.10 (Farnesyl pyrophosphate synthetase)LOC_Os01g53600LOC_Os05g50550DiphosphateDelta3-isopentenyl-PPDiphosphateDelta3-isopentenyl-PPDiphosphateLOC_Os04g56230LOC_Os01g50760 (FPPS)7LOC_Os04g56210LOC_Os01g50050


Description

In plants the geranyl-geranyl diphosphate (GGPP) as a precursor molecule that feeds in the biosynthesis of essential compounds such as chlorophylls, carotenoids, plastoquinones, growth hormone gibberellin and other secondary metabolites. Occurs in plastids.

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Quality Tags

Ontology Terms

 

Bibliography

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  1. Hayashi Y, Toyomasu T, Hirose Y, Onodera Y, Mitsuhashi W, Yamane H, Sassa T, Dairi T; ''Comparison of the enzymatic properties of ent-copalyl diphosphate synthases in the biosynthesis of phytoalexins and gibberellins in rice.''; Biosci Biotechnol Biochem, 2008 PubMed Europe PMC Scholia
  2. Nah J, Song SJ, Back K; ''Partial characterization of farnesyl and geranylgeranyl diphosphatases induced in rice seedlings by UV-C irradiation.''; Plant Cell Physiol, 2001 PubMed Europe PMC Scholia
  3. Sanmiya K, Ueno O, Matsuoka M, Yamamoto N; ''Localization of farnesyl diphosphate synthase in chloroplasts.''; Plant Cell Physiol, 1999 PubMed Europe PMC Scholia
  4. Ohara K, Yamamoto K, Hamamoto M, Sasaki K, Yazaki K; ''Functional characterization of OsPPT1, which encodes p-hydroxybenzoate polyprenyltransferase involved in ubiquinone biosynthesis in Oryza sativa.''; Plant Cell Physiol, 2006 PubMed Europe PMC Scholia
  5. Sanmiya K, Iwasaki T, Matsuoka M, Miyao M, Yamamoto N; ''Cloning of a cDNA that encodes farnesyl diphosphate synthase and the blue-light-induced expression of the corresponding gene in the leaves of rice plants.''; Biochim Biophys Acta, 1997 PubMed Europe PMC Scholia
  6. Wickham KA, West CA; ''Biosynthesis of rice phytoalexins: identification of putative diterpene hydrocarbon precursors.''; Arch Biochem Biophys, 1992 PubMed Europe PMC Scholia
  7. Shimura K, Okada A, Okada K, Jikumaru Y, Ko KW, Toyomasu T, Sassa T, Hasegawa M, Kodama O, Shibuya N, Koga J, Nojiri H, Yamane H; ''Identification of a biosynthetic gene cluster in rice for momilactones.''; J Biol Chem, 2007 PubMed Europe PMC Scholia

History

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CompareRevisionActionTimeUserComment
123063view04:00, 23 June 2022EgonwMade a pathway clickable
107218view14:31, 17 September 2019MaintBotChEBI identifier normalization
71653view19:35, 17 October 2013MaintBotAutomated update of data sources
70137view20:54, 12 July 2013MaintBotupdated to 2013 schem
48986view22:51, 2 July 2012PjaiswalModified categories
48631view21:43, 7 June 2012Pjaiswaladded WP2212 xref to MEP pathway
48629view20:14, 7 June 2012PjaiswalModified description
48628view20:11, 7 June 2012Pjaiswalchanged alignments
48627view20:10, 7 June 2012PjaiswalPeriodical save, work in progress
48626view19:42, 7 June 2012PjaiswalModified description
48625view19:40, 7 June 2012PjaiswalOntology Term : 'plant cell' added !
48624view19:39, 7 June 2012PjaiswalOntology Term : 'diterpenoid biosynthetic pathway' added !
48623view19:37, 7 June 2012Pjaiswalmoved positions
48622view19:36, 7 June 2012Pjaiswaladded xref for Geranylgeranyl diphosphate and fixed gene ids
48621view19:33, 7 June 2012PjaiswalNew pathway

External references

DataNodes

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NameTypeDatabase referenceComment
Delta3-isopentenyl-PPMetaboliteC00129 (KEGG Compound)
Dimethylallyl-PPMetabolite358-71-4 (CAS)
DiphosphateMetabolite2466-09-3 (CAS)
EC:2.5.1.1 (Geranyl-diphosphate synthase)GeneProduct2.5.1.1 (Enzyme Nomenclature)
EC:2.5.1.10 (Farnesyl pyrophosphate synthetase)GeneProduct2.5.1.10 (Enzyme Nomenclature)
EC:2.5.1.29 (Geranylgeranyl pyrophosphate synthase)GeneProduct2.5.1.29 (Enzyme Nomenclature)
Geranyl-PPMetaboliteC00341 (KEGG Compound)
Geranylgeranyl diphosphateMetabolite15831 (ChEBI)
LOC_OS01G14630GeneProductLOC_OS01G14630 (Gramene Rice) polyprenyl synthetase, putative, expressed//diterpene phytoalexin metabolic process
LOC_Os01g50050GeneProductLOC_Os01g50050 (Gramene Rice) polyprenyl synthetase, putative, expressed
LOC_Os01g50760 (FPPS)GeneProductLOC_Os01g50760 (Gramene Rice) polyprenyl synthetase, putative, expressed
LOC_Os01g53600GeneProductLOC_Os01g53600 (Gramene Rice) farnesyltransferase subunit beta, putative, expressed//farnesyltranstransferase//protein farnesyltransferase
LOC_Os02g44780GeneProductLOC_Os02g44780 (Gramene Rice) polyprenyl synthetase, putative, expressed//isoprenoid biosynthetic process//diterpene phytoalexin metabolic process//farnesyltranstransferase
LOC_Os04g56210GeneProductLOC_Os04g56210 (Gramene Rice) polyprenyl synthetase, putative, expressed
LOC_Os04g56230GeneProductLOC_Os04g56230 (Gramene Rice) TRAF-type zinc finger family protein
LOC_Os05g50550GeneProductLOC_Os05g50550 (Gramene Rice) polyprenyl synthetase, putative, expressed
LOC_Os06g46450GeneProductLOC_Os06g46450 (Gramene Rice) polyprenyl synthetase, putative, expressed
LOC_Os07g39270GeneProductLOC_Os07g39270 (Gramene Rice) polyprenyl synthetase, putative, expressed//isoprenoid biosynthetic process//diterpene phytoalexin metabolic process//farnesyltranstransferase
LOC_Os08g09370GeneProductLOC_Os08g09370 (Gramene Rice) polyprenyl synthetase, putative, expressed
LOC_Os09g33930GeneProductLOC_Os09g33930 (Gramene Rice) farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed//farnesyltranstransferase
LOC_Os12g17320GeneProductLOC_Os12g17320 (Gramene Rice) polyprenyl synthetase, putative, expressed
Methylerythritol phosphate pathwayPathwayWP2212 (WikiPathways)
trans, trans-farnesyl diphosphateMetabolite13058-04-3 (CAS)

Annotated Interactions

No annotated interactions

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