Calvin cycle (Populus trichocarpa)

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carbonic acidRuBisCOsedoheptulose-1,7-bisphosphatasefructose-1,6-bisphosphatecarbon dioxideribulose-5-phosphate-3-epimeraseRuBisCO subunit bindingxylulose-5-phosphatesedoheptulose-1,7-bisphosphatasefructose-6-phosphatephosphoglycerate kinasetransketolasecarbonic anhydrasefructose-1,6-bisphosphataseRuBisCO activaseerythrose-4-phosphateglyceraldehyde-3-phosphate dehydrogenasedihydroxy-acetone phosphatephosphoribulokinase3-phosphoglycerateglyceraldehyde-3-phosphateribose-5-phosphatealdolaseribulose-1,5-bisphosphateribulose-5-phosphateCHOLOROPLAST1,3-bisphosphoglyceratetransketolasealdolasesedoheptulose-7-bisphosphataseribulose-5-phosphate epimeraseADPATPNADP+NADPHADPATP


Description

This plant pathway represents the Calvin cycle (chloroplast). The pathway was inspired from the book Plant Physiology (Third edition) by Taiz and Zeiger and by Bohler et al (Differential impact of chronic ozone exposure on expanding and fully expanded poplar leaves. Tree Physiol 2010, 30, (11), 1415-1432.) Figures 8 + 9.

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Quality Tags

Ontology Terms

 

Bibliography

  1. Bohler S, Sergeant K, Lefèvre I, Jolivet Y, Hoffmann L, Renaut J, Dizengremel P, Hausman JF; ''Differential impact of chronic ozone exposure on expanding and fully expanded poplar leaves.''; Tree Physiol, 2010 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
102771view21:10, 23 January 2019EgonwFixed the casing of two ChEBI identifiers (prefix should be CHEBI: instead of ChEBI:)
86996view14:39, 15 July 2016MkutmonOntology Term : 'photosynthesis pathway' added !
78143view13:17, 5 December 2014AnweshaFixed metabolite annotation
78141view12:58, 5 December 2014AnweshaAnnotated enzymes
78140view12:54, 5 December 2014AnweshaFixed Mmetabolite labels, annotations, and protein annotations
77740view12:59, 16 October 2014SbohlerModified description
77739view12:58, 16 October 2014SbohlerModified description
77731view12:39, 16 October 2014AnweshaAdded literature reference
77724view12:25, 16 October 2014SbohlerModified description
77720view12:16, 16 October 2014AnweshaNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
1,3-bisphosphoglycerateMetaboliteC00236 (KEGG Compound)
3-phosphoglycerateMetaboliteCHEBI:17050 (ChEBI)
ADPMetaboliteCHEBI:16761 (ChEBI)
ATPMetaboliteCHEBI:15422 (ChEBI)
NADP+MetaboliteCHEBI:18009 (ChEBI)
NADPHMetaboliteCHEBI:16474 (ChEBI)
RuBisCO activaseProteinA9PFQ2 (Uniprot-TrEMBL)
RuBisCO subunit bindingProteinB9HQD5 (Uniprot-TrEMBL)
RuBisCOProteinB9GXY0 (Uniprot-TrEMBL)
aldolaseProteinA9PJC9 (Uniprot-TrEMBL)
carbon dioxideMetaboliteCHEBI:16526 (ChEBI)
carbonic acidMetaboliteCHEBI:28976 (ChEBI)
carbonic anhydraseProteinQ41088 (Uniprot-TrEMBL)
dihydroxy-acetone phosphateMetabolite
erythrose-4-phosphateMetabolite
fructose-1,6-bisphosphataseProtein
fructose-1,6-bisphosphateMetabolite
fructose-6-phosphateMetabolite
glyceraldehyde-3-phosphate dehydrogenaseProteinQ9SNX8 (Uniprot-TrEMBL)
glyceraldehyde-3-phosphateMetaboliteCHEBI:17050 (ChEBI)
phosphoglycerate kinaseProteinB9HY29 (Uniprot-TrEMBL)
phosphoribulokinaseProtein
ribose-5-phosphateMetaboliteCHEBI:17050 (ChEBI)
ribulose-1,5-bisphosphateMetaboliteCHEBI:17050 (ChEBI)
ribulose-5-phosphate epimeraseProtein
ribulose-5-phosphate-3-epimeraseProtein
ribulose-5-phosphateMetaboliteCHEBI:17050 (ChEBI)
sedoheptulose-1,7-bisphosphataseProtein
sedoheptulose-7-bisphosphataseMetabolite
transketolaseProteinB9GPE7 (Uniprot-TrEMBL)
xylulose-5-phosphateMetabolite

Annotated Interactions

No annotated interactions

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