TCA cycle (Saccharomyces cerevisiae)

GenMAPP notes 

Based on Glycolysis and Gluconeogenesis Pathways at SGD and on Kruckeberg, AL and Dickinson, JR (2004) Carbon Metabolism in The Metabolism and Molecular Physiology of Saccharomyces cerevisiae, Dickinson, JR and Schweizer, M, eds, CRC Press.

GenMAPP remarks 

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Bibliography

1. J. Richard Dickinson, Michael Schweizer; ''Metabolism and Molecular Physiology of Saccharomyces Cerevisiae''; CRC Press (book); ISBN-10: 0415299004, 2004

History

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Compare	Revision	Action	Time	User	Comment
	134390	view	19:22, 21 July 2024	Eweitz	Remove template comments
	127618	view	20:12, 8 November 2023	Larsgw	Fix reference bp:DB
	124735	view	20:27, 7 December 2022	Mkutmon	fix publication ref
	117346	view	11:53, 20 May 2021	Eweitz	Modified title
	114000	view	21:47, 16 December 2020	Egonw	Another pathway clickable
	107027	view	13:48, 17 September 2019	MaintBot	HMDB identifier normalization
	102523	view	19:28, 3 January 2019	Khanspers	removed GenMAPP comments
	102428	view	12:53, 23 December 2018	DeSl	Removed "last modified" item
	102427	view	12:52, 23 December 2018	DeSl	Modified description
	102426	view	12:51, 23 December 2018	DeSl	Added lit. ref
	102420	view	10:05, 23 December 2018	Egonw	Replaced a deleted CAS number with the active one.
	87407	view	11:05, 22 July 2016	MaintBot	added missing graphids
	79804	view	16:25, 16 April 2015	Mkutmon	changed interaction in legend to graphical line
	78394	view	10:25, 7 January 2015	MaintBot	added missing graphIds
	78137	view	00:50, 5 December 2014	AlexanderPico	Finished cleanup
	78136	view	00:29, 5 December 2014	AlexanderPico	Fixing cycle and catalytic reactions
	78135	view	00:16, 5 December 2014	AlexanderPico	Added link to pathway WP515
	78134	view	00:11, 5 December 2014	AlexanderPico	Fixing metabolites, cell shapes and interactions
	69885	view	18:34, 11 July 2013	Egonw	Marked a few DataNodes with CAS registry numbers as metabolites.
	69620	view	20:34, 8 July 2013	MaintBot	Updated to 2013 gpml schema
	67687	view	11:49, 26 June 2013	Ddigles	Ontology Term : 'citrate cycle pathway' added !
	58986	view	19:34, 21 February 2013	MaintBot	Updated Ensembl and UniProt data source
	41854	view	04:51, 2 March 2011	MaintBot	Removed redundant pathway information and comments
	29899	view	12:03, 9 June 2009	Thomas
	21710	view	11:32, 14 November 2008	MaintBot	[[Pathway:Saccharomyces cerevisiae:Krebs-TCA Cycle]] moved to [[Pathway:WP490]]: Moved to stable identifier
	12760	view	08:01, 17 May 2008	MaintBot	automated metabolite conversion
	10996	view	20:21, 2 March 2008	MaintBot	yeast id converter
	10477	view	18:41, 30 January 2008	Khanspers	Modified categories
	10264	view	23:24, 18 January 2008	AlexanderPico	minor touch-ups and initial attempt to fix gene IDs
	8801	view	14:09, 7 January 2008	MaintBot	Added to category $category
	8799	view	14:09, 7 January 2008	Kdahlquist	Uploaded new pathway

External references

DataNodes

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Name	Type	Database reference	Comment
ACO1	GeneProduct	YLR304C (Ensembl)
ACO2	GeneProduct	YJL200C (Ensembl)
Acetyl-CoA	Metabolite	72-89-9 (CAS)
CIT1	GeneProduct	YNR001C (Ensembl)
CIT2	GeneProduct	YCR005C (Ensembl)
CIT3	GeneProduct	YPR001W (Ensembl)
DAL7	GeneProduct	YIR031C (Ensembl)
FUM1	GeneProduct	YPL262W (Ensembl)
ICL1 (peroxisome)	GeneProduct	YER065C (Ensembl)
IDH1	GeneProduct	YNL037C (Ensembl)
IDH2	GeneProduct	YOR136W (Ensembl)
IDP1	GeneProduct	YDL066W (Ensembl)
IDP2	GeneProduct	YLR174W (Ensembl)
KGD1	GeneProduct	YIL125W (Ensembl)
KGD2	GeneProduct	YDR148C (Ensembl)
LAT1	GeneProduct	YNL071W (Ensembl)
LPD1	GeneProduct	YFL018C (Ensembl)
LSC1	GeneProduct	YOR142W (Ensembl)
LSC2	GeneProduct	YGR244C (Ensembl)
MAE1	GeneProduct	YKL029C (Ensembl)
MDH1 (mt)	GeneProduct	YKL085W (Ensembl)
MDH2	GeneProduct	YOL126C (Ensembl)
MDH3	GeneProduct	YDL078C (Ensembl)
MLS1 (peroxisome)	GeneProduct	YNL117W (Ensembl)
Malate	Metabolite	617-48-1 (CAS)
Oxaloacetate	Metabolite	HMDB00223 (HMDB)
PDA1	GeneProduct	YER178W (Ensembl)
PDB1	GeneProduct	YBR221C (Ensembl)
PDX1	GeneProduct	YGR193C (Ensembl)
PYC1	GeneProduct	YGL062W (Ensembl)
PYC2	GeneProduct	YBR218C (Ensembl)
Pyruvate	Metabolite	HMDB00243 (HMDB)
SDH1	GeneProduct	YKL148C (Ensembl)
SDH2	GeneProduct	YLL041C (Ensembl)
SDH3	GeneProduct	YKL141W (Ensembl)
SDH4	GeneProduct	YDR178W (Ensembl)
Succinyl-CoA	Metabolite	604-98-8 (CAS)

Annotated Interactions

No annotated interactions