Flowering time pathway (Arabidopsis thaliana)

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NF-YA6NF-YA5NF-YA10NF-YA9NF-YA8NF-YA1NF-YA3NF-YA2NF-YA7NF-YA441, 559086FLOWERINGPR COMPLEXVNF-YA subunitAutonomous PathwayGENE BASKETSDPfrCIRCADIAN CLOCKVVSDGo ahead! Help us move these interactors into the pathway459, 74KEYBindingInhibition; Down-regulationTo be moved into PathwayParalogsAffects mRNA stability VernalizationComplexCo-regulationShort DayTranscript to ProteinActivation; Up-regulationNF-YB13VIN3PHPCALSOC1HFR1CDF2VEL1FDABF2RFI2PEPPCFS4GID1BCOCOP1ATCCDF5DCAF1AGL18VRN5TPS1NF-YC12FLXNF-YB4ABF4HRB1SPL3VEL2VRN1AP1CRY1SMZCLFSEFAGL17SDG26NF-YB10GIPIN1ATPRR9VRN2FCAABI5AGL19LHCB3GILDL1PAF2MSI1COL2PIF3AGL6SPA3TEM1FLDMFTBRMNF-YB7LHYMAF4CUL4ELF5SPA2HOS1COL4ARP6CAM4PIF4JMJ14TOE1PHYEGRF4PRR3NF-YB6NF-YB8FLKFIE1TFL1MAF1NF-YB9NF-YC7TEM2NF-YC10NF-YC6ATMYB33VIP4NF-YC8GRF2RGL2COP1ABF1ATH1SUF4NF-YC9FDPFIO1CIB1FYPP3ELF4NF-YB5EARLI1AGL16COL1SLY1TSFLDL2SEFAGL79AGL21GRF1DDB1ACHEESD4PRR5CKA1CCA1CDF3SVPDDB2FIE2GA1GRF9FULTFL2DDB1BGID1CFYLUXDPBF2LWD1FTCKB2CSD2GBF4CDF1VIP3ATX1SPL9SEP3RGL1PIE1RGA1NF-YC11PKDM7CCOL3CK2alphaCNF-YC4FKF1GRF6CRY2ELF7PKDM7DESP4FUS9FWAMAF5SEP1VEL3JMJ13EFSFWAFRIGRF5RAV1TFL2TFL2TOC1SPA4COL9SPYAP2ZTLmiRNA156PHYBFPAPHYDPIF7VEL1GASRR1FVEEDF3SPA1NF-YC1AREB3SPL5NF-YC3PHYCMAF2ZTLDDF1PIE1NF-YB12CK2alphaCpDET1ABF3GID1AHUA2LWD2ATbZIP15FRL2COAGL14VIN3PIE1COL5FLCELF9PHYAFRL1SKB1DNFTT16SDG25COL5NF-YC2GAINF-YB2TICCKB4ELF3LFYPIF6NF-YB1ARP6RBX1CKB3ARP6PIL6ELF8GRF8ABH1PRR7LUXDDF2AGL24FKF1SPL4LDCKB1GRF7WNK8LKP2EDM2miRNA172PFT1SRT2NDPK2FPF1AGL74FES1NF-YC5EBSPAF1BFTCKA2MAF3NF-YB3EMF2SWNSINAT5NF-YB11GRF3NF-YC13451645, 6145458972, 993170, 73154545454572, 99304545454519453345245, 59454511, 7045445456369GI454545824574542, 45994513, 46, 494592, 9924999459945, 7045454545453745, 741387454545, 9445, 7413, 4978, 97457245451799154511, 704533, 362956, 57, 9997314510, 100459945457245454556, 57, 9945454545, 661314510654524, 39, 8092, 9956, 57, 9911, 7091454515, 45, 97799927, 32, 45, 748545, 709945774545454554, 994522, 45, 62, 9645454572459985984527, 4793337745451445838996, 8123, 45451044545, 705, 38, 899945459941, 454545454567454544454545791845454545454568451245994528, 62454510459622, 45, 62, 964545994527454589453345994545204530454592, 994545, 1014513, 4945, 7077109945453145993, 71, 95453645, 746458454521ZTL4545FACFTFDGRF345COFLCSOC1FTWER43Altered expressionGibberellic Acid BrassinosteroidVernalization Photoperiod ARP453F3L24.684AGAL251SFR6SAL110251WNK595ELF4-L1ELF4-L24545ELF4-L445ELF4-L3FRI-LP145DOF1.54545RAVL345bZIP1345RAVL245COR15aCRP5025WNK176PRR345RVE848, 60, 75U2AF35A26MBD940, 88ELF635, 103BES1REF63535, 103ESD790TFL2ICU2FAS23490NUCSUS452?5252Sugar MetabolismESD790EMF234CLF34B3H7I245EEL45TOE3TOE245EEC4545AtDOF1.3AtDOF2.34545NF-YB subunitNF-YC subunitSNZ24, 45


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  137. Rieu I, Ruiz-Rivero O, Fernandez-Garcia N, Griffiths J, Powers SJ, Gong F, Linhartova T, Eriksson S, Nilsson O, Thomas SG, Phillips AL, Hedden P; ''The gibberellin biosynthetic genes AtGA20ox1 and AtGA20ox2 act, partially redundantly, to promote growth and development throughout the Arabidopsis life cycle.''; Plant J, 2008 PubMed Europe PMC Scholia
  138. Levy YY, Mesnage S, Mylne JS, Gendall AR, Dean C; ''Multiple roles of Arabidopsis VRN1 in vernalization and flowering time control.''; Science, 2002 PubMed Europe PMC Scholia
  139. Khanna R, Kronmiller B, Maszle DR, Coupland G, Holm M, Mizuno T, Wu SH; ''The Arabidopsis B-box zinc finger family.''; Plant Cell, 2009 PubMed Europe PMC Scholia
  140. Blázquez MA, Ahn JH, Weigel D; ''A thermosensory pathway controlling flowering time in Arabidopsis thaliana.''; Nat Genet, 2003 PubMed Europe PMC Scholia
  141. Farinas B, Mas P; ''Functional implication of the MYB transcription factor RVE8/LCL5 in the circadian control of histone acetylation.''; Plant J, 2011 PubMed Europe PMC Scholia
  142. Tsuchiya T, Eulgem T; ''The Arabidopsis defense component EDM2 affects the floral transition in an FLC-dependent manner.''; Plant J, 2010 PubMed Europe PMC Scholia
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  150. Choi K, Park C, Lee J, Oh M, Noh B, Lee I; ''Arabidopsis homologs of components of the SWR1 complex regulate flowering and plant development.''; Development, 2007 PubMed Europe PMC Scholia
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  158. Yu X, Michaels SD; ''The Arabidopsis Paf1c complex component CDC73 participates in the modification of FLOWERING LOCUS C chromatin.''; Plant Physiol, 2010 PubMed Europe PMC Scholia
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  160. Herr AJ, Monlàr A, Jones A, Baulcombe DC; ''Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis.''; Proc Natl Acad Sci U S A, 2006 PubMed Europe PMC Scholia
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History

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CompareRevisionActionTimeUserComment
124574view01:01, 12 November 2022KhanspersModified title
124573view21:34, 11 November 2022KhanspersModified title
124533view15:46, 5 November 2022CernModified title
119567view10:21, 16 July 2021FinterlyAdded DOI to PublicationXref
118345view13:27, 27 May 2021Mkutmonupdate metadata
118342view13:25, 27 May 2021Mkutmonfix publication refs
117235view09:47, 19 May 2021EweitzModified title
109365view14:12, 16 March 2020L DupuisConverted interactions to graphical lines in legend
102412view08:34, 23 December 2018EgonwRemoved a link which was used as PubMed ID.
102083view19:42, 28 November 2018EgonwRemoved whitespace in PubMed identifiers.
87502view01:47, 25 July 2016AlexanderPicoOntology Term : 'signaling pathway' added !
87353view09:27, 22 July 2016MaintBotadded missing graphids
86924view12:08, 15 July 2016Mkutmonfixed publication references
85987view19:13, 22 June 2016Khanspersremove comment with weird format
85827view15:07, 16 June 2016Mbluemelupdated literature, added SYP22, removed TT16, CAM4, AGL79, ABF4 (no known function in flowering time regulation)
85634view13:47, 4 June 2016EgonwReplaced a mim-conversion with mim-stimulation.
85623view13:32, 3 June 2016Mbluemelupdated circadian clock pathway, updated references
85570view15:36, 1 June 2016Mbluemelintegrated AtSWC2, SWR1 complex, updated literature
83022view16:23, 17 November 2015Mbluemelintegrated ambient temperature pathway, updated literature
82930view15:10, 13 November 2015Mbluemelintegrated new genes BBX19, BBX32, updated literature
82844view14:35, 6 November 2015Mbluemelupdated and corrected gibberellin pathway, updated literature, added genes: SNE, GA20ox1,2 SIZ1, GNC, GNL corrected position of ABI5 as positive regulator of FLC, removed GA1 (no role in flowering time control)
82834view16:52, 5 November 2015Mbluemelupdated literature and connections for SMZ,SNZ,TEM, added SWI/SNF ATPase genes, moved Gibberellin pathway, added RGL3, AGL42/FYF, AGL71, AGL72
82639view13:25, 16 October 2015Mbluemeladded AtBMI1a, AtRING1a, corrected PRC2 complex, removed duplicate of LHP1/TFL2, updated literature
82612view09:30, 14 October 2015Mbluemelrenamed CK2 genes following Salinas et al. 2006, updated literature, updated connections and literature for AGL6 and AGL14, deleted AGL21, SEP1, SEP3, AREB3, DPBF2 because no proven role in flowering time control
82207view16:33, 14 September 2015Mbluemeladded age pathway, added SPL10, integrated TOE2, updated literature, updated connections
81135view13:33, 27 July 2015MbluemelModified description
78910view17:21, 12 February 2015Mbluemel
78898view14:57, 11 February 2015Mbluemelinserted TPS1 as regulator of miRNA156 and SPL3-5 according to Wahl et al. 2013
78387view10:22, 7 January 2015MaintBotadded missing graphIds
74448view05:15, 21 April 2014EgonwFixed PubMed IDs.
74065view11:00, 27 March 2014AnweshaImproved Layout
70199view04:46, 13 July 2013MaintBotupdated to 2013 schema
68755view14:40, 7 July 2013EgonwFixed the data source to Wikipedia.
58393view21:45, 12 February 2013MaintBotModified categories
51896view22:54, 24 September 2012MamathaNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
?
ABF1GeneProductAT1G49720 (TAIR) Related to flowering; no pathway found.
ABF2GeneProductAT1G45249 (TAIR) Related to flowering; no pathway found.
ABF3GeneProductAT4G34000 (TAIR) Related to flowering; no pathway found.
ABF4GeneProductAT3G19290 (TAIR)
ABH1GeneProductAT2G13540 (TAIR)
ABI5GeneProductAT2G36270 (TAIR)
AGAL2GeneProductAT5G08370 (TAIR) MA Related to flowering; no pathway found.
AGL14GeneProductAT4G11880 (TAIR)
AGL16GeneProductAT3G57230 (TAIR)
AGL17GeneProductAT2G22630 (TAIR)
AGL18GeneProductAT3G57390 (TAIR)
AGL19GeneProductAT4G22950 (TAIR)
AGL21GeneProductAT4G37940 (TAIR)
AGL24GeneProductAT4G24540 (TAIR)
AGL6GeneProductAT2G45650 (TAIR)
AGL74GeneProductAT1G48150 (TAIR)
AGL79GeneProductAT3G30260 (TAIR)
AP1GeneProductAT1G69120 (TAIR)
AP2GeneProductAT4G36920 (TAIR)
AREB3GeneProductAT3G56850 (TAIR)
ARP4GeneProductAT1G18450 (TAIR) Related to flowering; no pathway found.
ARP6GeneProductAT3G33520 (TAIR) Denotes the SWR1 complex consisting of PIE1,SEF1 and ARP6
ATCGeneProductAT2G27550 (TAIR)
ATH1GeneProductAT4G32980 (TAIR)
ATMYB33GeneProductAT5G06100 (TAIR)
ATX1GeneProductAT2G31650 (TAIR)
ATbZIP15GeneProductAT5G42910 (TAIR) Related to flowering; no pathway found.
AtDOF1.3 GeneProductAT1G26790 (TAIR)
AtDOF2.3 GeneProductAT2G34140 (TAIR) DL4430C
B3H7I2 GeneProductAT4G16810 (TAIR) DL4430C
BES1GeneProductAT1G19350 (TAIR) BES1 recruits other transcriptional regulators such as ELF6 and REF6 to regulate target gene expression and coordinate BR responses with other developmental processes such as control of flowering time
BFTGeneProductAT5G62040 (TAIR)
BRMGeneProductAT2G46020 (TAIR) Partially redundant with autonomous pathway; acts through photoperiod pathway to suppress the floral promoters CO, FT and SOC1 and the floral repressor FLC.
CALGeneProductAT1G26310 (TAIR)
CAM4GeneProductAT1G66410 (TAIR)
CCA1GeneProductAT2G46830 (TAIR)
CDF1GeneProductAT5G62430 (TAIR)
CDF2GeneProductAT5G39660 (TAIR)
CDF3GeneProductAT3G47500 (TAIR)
CDF5GeneProductAt1g69570 (TAIR)
CHEGeneProductAT5G08330 (TAIR)
CIB1GeneProductAT4G34530 (TAIR)
CK2alphaCGeneProductAT2G23080 (TAIR) Symbol assigned by Mamatha Hanumappa, 16-Nov-2011
CK2alphaCpGeneProductAT2G23070 (TAIR) Symbol assigned by Mamatha Hanumappa, 16-Nov-2011
CKA1GeneProductAT5G67380 (TAIR)
CKA2GeneProductAT3G50000 (TAIR)
CKB1GeneProductAT5G47080 (TAIR)
CKB2GeneProductAT4G17640 (TAIR)
CKB3GeneProductAT3G60250 (TAIR)
CKB4GeneProductAT2G44680 (TAIR)
CLFProteinAT2G23380 (TAIR) Polycomb group protein
COGeneProductAT5G15840 (TAIR)
COGeneProductAT5G15840 (TAIR)
COL1GeneProductAT5G15850 (TAIR)
COL2GeneProductAT3G02380 (TAIR)
COL3GeneProductAT2G24790 (TAIR)
COL4GeneProductAT5G24930 (TAIR)
COL5GeneProductAT5G57660 (TAIR)
COL9GeneProductAT3G07650 (TAIR)
COP1GeneProductAT2G32950 (TAIR)
COR15a GeneProductAT2G42540 (TAIR)
CRPGeneProductAT4G00450 (TAIR) Related to flowering; no pathway found.
CRY1GeneProductAT4G08920 (TAIR)
CRY2GeneProductAT1G04400 (TAIR)
CSD2GeneProductAT2G28190 (TAIR)
CUL4GeneProductAT5G46210 (TAIR)
DCAF1GeneProductAT4G31160 (TAIR)
DDB1AGeneProductAT4G05420 (TAIR)
DDB1BGeneProductAT4G21100 (TAIR)
DDB2GeneProductAT5G58760 (TAIR)
DDF1GeneProductAT1G12610 (TAIR)
DDF2GeneProductAT1G63030 (TAIR)
DET1GeneProductAT4G10180 (TAIR)
DNFGeneProductAT3G19140 (TAIR)
DOF1.5 GeneProductAT1G29160 (TAIR)
DPBF2GeneProductAT3G44460 (TAIR)
EARLI1GeneProductAT4G12480 (TAIR) bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein; Represses FLC, activates SOC1 and FT.
EBSGeneProductAT4G22140 (TAIR)
EDF3GeneProductAT3G25730 (TAIR) Related to flowering; no pathway found.
EDM2GeneProductAT5G55390 (TAIR)
EEC GeneProductAT3G21320 (TAIR) DL4430C
EEL GeneProductAT2G41070 (TAIR) DL4430C
EFSGeneProductAT1G77300 (TAIR)
ELF3GeneProductAT2G25930 (TAIR)
ELF4-L1 GeneProductAT2G29950 (TAIR)
ELF4-L2 GeneProductAT1G72630 (TAIR)
ELF4-L3 GeneProductAT2G06255 (TAIR)
ELF4-L4 GeneProductAT1G17455 (TAIR)
ELF4GeneProductAT2G40080 (TAIR)
ELF5GeneProductAT5G62640 (TAIR)
ELF6GeneProductAT5G04240 (TAIR) ELF6 does not function in the same pathway as the FLC-dependent pathway but rather functions as an upstream repressor of the photoperiodic flowering pathway (PMID 15377760). BES1 recruits ELF6 and REF6, among others, to coordinate BR responses with other developmental processes such as control of flowering time
ELF7GeneProductAT1G79730 (TAIR)
ELF8GeneProductAT2G06210 (TAIR)
ELF9GeneProductAT5G16260 (TAIR)
EMF2GeneProductAT5G51230 (TAIR) Polycomb group protein EMBRYONIC FLOWER2 was found to be epistatic to ICU2
ESD4GeneProductAT4G15880 (TAIR)
ESD7GeneProductAT1G08260 (TAIR)
ESP4GeneProductAT5G01400 (TAIR) Forms a complex with FY
F3L24.6GeneProductAT3G09190 (TAIR) Regulates flowering time in Ws ecotype. Putative Lectin.
FAS2GeneProductAT5G64630 (TAIR) FAS2 may function downstream of ESD7 FAS2 and ICU2 interact with ESD7 in the control of flowering time
FCAGeneProductAT4G16280 (TAIR)
FDGeneProductAT4G35900 (TAIR)
  • Rice ortholog FD1 binds to promoter of MADS15, the arabidopsis AP1 ortholog, to activate transcription.
FDGeneProductAT4G35900 (TAIR)
FDPGeneProductAT2G17770 (TAIR)
FES1GeneProductAT2G33835 (TAIR)
FIE1GeneProductAT3G20740 (TAIR)
FIE2GeneProductAT2G35670 (TAIR) Similar to EMF2
FIO1GeneProductAT2G21070 (TAIR)
FKF1GeneProductAT1G68050 (TAIR)
FKF1GeneProductAT1G68050 (TAIR)
FLC GeneProductAT5G10140 (TAIR)
FLCGeneProductAT5G10140 (TAIR)
FLDGeneProductAT3G10390 (TAIR)
FLKGeneProductAT3G04610 (TAIR)
FLXGeneProductAT2G30120 (TAIR)
FPAGeneProductAT2G43410 (TAIR)
FPF1GeneProductAT5G24860 (TAIR)
FRI-LP1 GeneProductAT5G27220 (TAIR)
  • A_TM021B04.7
  • FRI-LP1 assigned by Mamatha Hanumappa, 18-Nov-2011
FRIGeneProductAT4G00650 (TAIR)
FRL1GeneProductAT5G16320 (TAIR)
FRL2GeneProductAT1G31814 (TAIR)
FTGeneProductAT1G65480 (TAIR)
  • Ortholog of rice florigen Hd3a
FTGeneProductAT1G65480 (TAIR)
FTGeneProductAT1G65480 (TAIR)
FULGeneProductAT5G60910 (TAIR)
FUS9GeneProductAT3G13550 (TAIR)
FVEGeneProductAT2G19520 (TAIR)
FWAGeneProductAT4G25530 (TAIR)
FYGeneProductAT5G13480 (TAIR)
FYPP3GeneProductAT1G50370 (TAIR)
GA1GeneProductAT4G02780 (TAIR)
GAMetaboliteGibberellic Acid (Wikipedia) GA1 catalyzes conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) in gibberellin biosynthesis.
GAIGeneProductAT1G14920 (TAIR)
GBF4GeneProductAT1G03970 (TAIR) Related to flowering; no pathway found.
GIGeneProductAT1G22770 (TAIR)
GID1A GeneProductAT3G05120 (TAIR) AFFINITY TO GA4; ASSOCIATED WITH GID1B AND C WHICH ARE FUNCTIONALLY REDUNDANT
GID1BGeneProductAT3G63010 (TAIR) ASSOCIATED WITH GID1A AND C WHICH ARE FUNCTIONALLY REDUNDANT
GID1CGeneProductAT5G27320 (TAIR) FUNCTIONALLY REDUNDANT TO GID1A AND B
GRF1GeneProductAT4G09000 (TAIR)
GRF2GeneProductAT1G78300 (TAIR)
GRF3GeneProductAT5G38480 (TAIR)
  • Rice ortholog GF14c bridges Hd3a and FD1 in rice.
GRF3GeneProductAT5G38480 (TAIR)
GRF4GeneProductAT1G35160 (TAIR)
GRF5GeneProductAT5G16050 (TAIR)
GRF6GeneProductAT5G10450 (TAIR)
GRF7GeneProductAT3G02520 (TAIR)
GRF8GeneProductAT5G65430 (TAIR)
GRF9GeneProductAT2G42590 (TAIR)
HFR1GeneProductAT1G02340 (TAIR)
HOS1GeneProductAT2G39810 (TAIR)
HRB1GeneProductAT5G49230 (TAIR)
HUA2GeneProductAT5G23150 (TAIR)
ICU2GeneProductAT5G67100 (TAIR)
JMJ13GeneProductAT5G46910 (TAIR) Based on Rice. Assigned based on PMID:18765808 by Mamatha Hanumappa, 18-Nov-2011
JMJ14GeneProductAT4G20400 (TAIR) PKDM7B
LDGeneProductAT4G02560 (TAIR)
LDL1GeneProductAT1G62830 (TAIR)
LDL2GeneProductAT3G13682 (TAIR)
LFYGeneProductAT5G61850 (TAIR)
LHCB3GeneProductAT5G54270 (TAIR) LHCB*3
LHYGeneProductAT1G01060 (TAIR)
LKP2GeneProductAT2G18915 (TAIR)
LUXGeneProductAT3G46640 (TAIR)
LWD1GeneProductAT1G12910 (TAIR)
LWD2GeneProductAT3G26640 (TAIR)
MAF1GeneProductAT1G77080 (TAIR)
MAF2GeneProductAT5G65050 (TAIR)
MAF3GeneProductAT5G65060 (TAIR) Considered "FLC-related"
MAF4GeneProductAT5G65070 (TAIR) Considered "FLC-related"
MAF5GeneProductAT5G65080 (TAIR) Considered "FLC-related"
MBD9GeneProductAT3G01460 (TAIR)
MFTGeneProductAT1G18100 (TAIR)
MSI1GeneProductAT5G58230 (TAIR)
NDPK2GeneProductAT5G63310 (TAIR) INTERACTS WITH PRMT5 TO PROMOTE VEGETATIVE GROWTH
NF-YA10GeneProductAT5G06510 (TAIR)
NF-YA1GeneProductAT5G12840 (TAIR)
NF-YA2GeneProductAT3G05690 (TAIR)
NF-YA3GeneProductAT1G72830 (TAIR)
NF-YA4GeneProductAT2G34720 (TAIR)
NF-YA5GeneProductAT1G54160 (TAIR)
NF-YA6GeneProductAT3G14020 (TAIR)
NF-YA7GeneProductAT1G30500 (TAIR)
NF-YA8GeneProductAT1G17590 (TAIR)
NF-YA9GeneProductAT3G20910 (TAIR)
NF-YB10GeneProductAT3G53340 (TAIR)
NF-YB11GeneProductAT2G27470 (TAIR)
NF-YB12GeneProductAT5G08190 (TAIR)
NF-YB13GeneProductAT5G23090 (TAIR)
NF-YB1GeneProductAT2G38880 (TAIR)
NF-YB2GeneProductAT5G47640 (TAIR)
NF-YB3GeneProductAT4G14540 (TAIR)
NF-YB4GeneProductAT1G09030 (TAIR)
NF-YB5GeneProductAT2G47810 (TAIR)
NF-YB6GeneProductAT5G47670 (TAIR)
NF-YB7GeneProductAT2G13570 (TAIR)
NF-YB8GeneProductAT2G37060 (TAIR)
NF-YB9GeneProductAT1G21970 (TAIR)
NF-YC10GeneProductAT1G07980 (TAIR)
NF-YC11GeneProductAT3G12480 (TAIR)
NF-YC12GeneProductAT5G38140 (TAIR)
NF-YC13GeneProductAT5G43250 (TAIR)
NF-YC1GeneProductAT3G48590 (TAIR)
NF-YC2GeneProductAT1G56170 (TAIR)
NF-YC3GeneProductAT1G54830 (TAIR)
NF-YC4GeneProductAT5G63470 (TAIR)
NF-YC5GeneProductAT5G50490 (TAIR)
NF-YC6GeneProductAT5G50480 (TAIR)
NF-YC7GeneProductAT5G50470 (TAIR)
NF-YC8GeneProductAT5G27910 (TAIR)
NF-YC9GeneProductAT1G08970 (TAIR)
NUCGeneProductAT5G44160 (TAIR) Reciprocal BLAST showed that NUC/IDD8 is homologous to rice ID1
PAF1GeneProductAT5G42790 (TAIR)
PAF2GeneProductAT1G47250 (TAIR) Related to flowering; no pathway found.
PCFS4GeneProductAT4G04885 (TAIR) Forms a complex with FY
PEPGeneProductAT4G26000 (TAIR)
PFT1GeneProductAT1G25540 (TAIR)
PHPGeneProductAT3G22590 (TAIR)
PHYAGeneProductAT1G09570 (TAIR)
PHYBGeneProductAT2G18790 (TAIR)
PHYCGeneProductAT5G35840 (TAIR)
PHYDGeneProductAT4G16250 (TAIR)
PHYEGeneProductAT4G18130 (TAIR)
PIE1GeneProductAT3G12810 (TAIR) This denotes the SWR1 complex consisting of PIE1,SEF1 and ARP6
PIF3GeneProductAT1G09530 (TAIR)
PIF4GeneProductAT2G43010 (TAIR)
PIF6GeneProductAT3G62090 (TAIR)
PIF7GeneProductAT5G61270 (TAIR)
PIL6GeneProductAT3G59060 (TAIR)
PIN1ATGeneProductAT2G18040 (TAIR)
PKDM7CGeneProductAT2G34880 (TAIR) Due to high homology with PKDM7B, may also be involved with downregulation of FT/TSF
PKDM7DGeneProductAT1G08620 (TAIR) PKDM7D. Due to high homology with PKDM7B, may also be involved with downregulation of FT/TSF
PRR3GeneProductAT5G60100 (TAIR)
PRR5GeneProductAT5G24470 (TAIR)
PRR7GeneProductAT5G02810 (TAIR)
PRR9GeneProductAT2G46790 (TAIR)
RAV1GeneProductAT1G13260 (TAIR) RAV1 is an orthologue of TEM1 and TEM2
RAVL2 GeneProductAT1G50680 (TAIR) Assigned by Mamatha Hanumappa, 18-Nov-2011
RAVL3 GeneProductAT1G51120 (TAIR) Assigned by Mamatha Hanumappa, 18-Nov-2011
RBX1GeneProductAT5G20570 (TAIR)
REF6GeneProductAT3G48430 (TAIR) In other pathway REF6 is listed as interacting with FT - please edit BES1 recruits other transcriptional regulators such as ELF6 and REF6 to regulate target gene expression and coordinate BR responses with other developmental processes such as control of flowering time
RFI2GeneProductAT2G47700 (TAIR)
RGA1GeneProductAT2G01570 (TAIR)
RGL1GeneProductAT1G66350 (TAIR)
RGL2GeneProductAT3G03450 (TAIR)
RVE8GeneProductAT3G09600 (TAIR)
  • Evidence is for binding to the evening element (EE) in the TOC1 promoter
  • Regulation of circadian clock by modulating the pattern of histone 3 (H3) acetylation
SAL1GeneProductAT5G63980 (TAIR) Related to flowering; no pathway found.

ExP; MA Bifunctional protein – regulates flowering time via its 3'(2'),5'-bisphosphate nucleotidase activity

promotes flowering, possibly in the photoperiod pathway upstream of FT but downstream of phyB
SDG25GeneProductAT5G42400 (TAIR)
SDG26GeneProductAT1G76710 (TAIR)
SEFGeneProductAT5G37055 (TAIR) Denotes the SWR1 complex consisting of PIE1,SEF1 and ARP6
SEP1GeneProductAT5G15800 (TAIR)
SEP3GeneProductAT1G24260 (TAIR)
SFR6GeneProductAT4G04920 (TAIR) Related to flowering. SFR6 acts upstream of CCA1 GI and TOC1
SINAT5GeneProductAT5G53360 (TAIR)
SKB1GeneProductAT4G31120 (TAIR) SKB1;Represses FLC by H4R3sme2 histone demethylation of promoter
SLY1GeneProductAT4G24210 (TAIR)
SMZGeneProductAT3G54990 (TAIR)
SNZGeneProductAT2G39250 (TAIR) RAV1 is an orthologue of TEM1 and TEM2
SOC1GeneProductAT2G45660 (TAIR)
SOC1GeneProductAT2G45660 (TAIR) AGL20
SPA1GeneProductAT2G46340 (TAIR)
SPA2GeneProductAT4G11110 (TAIR)
SPA3GeneProductAT3G15354 (TAIR)
SPA4GeneProductAT1G53090 (TAIR)
SPL3GeneProductAT2G33810 (TAIR)
SPL4GeneProductAT1G53160 (TAIR) Most likely has overlapping roles with SPL3
SPL5GeneProductAT3G15270 (TAIR) Most likely has overlapping roles with SPL3
SPL9GeneProductAT2G42200 (TAIR)
SPYGeneProductAT3G11540 (TAIR)
SRR1GeneProductAT5G59560 (TAIR)
SRT2GeneProductAT5G09230 (TAIR)
SUF4GeneProductAT1G30970 (TAIR)
SUS4GeneProductAT3G43190 (TAIR)
SVPGeneProductAT2G22540 (TAIR)
SWNGeneProductAT4G02020 (TAIR)
TEM1GeneProductAT1G25560 (TAIR)
TEM2GeneProductAT1G68840 (TAIR) TEM2 is synonomous with RAV2
TFL1GeneProductAT5G03840 (TAIR)
TFL2GeneProductAT5G17690 (TAIR)
TFL2GeneProductAT5G17690 (TAIR)
TICGeneProductAT3G22380 (TAIR)
TOC1GeneProductAT5G61380 (TAIR) PRR1
TOE1GeneProductAT2G28550 (TAIR)
TOE2GeneProductAT5G60120 (TAIR) DL4430C
TOE3 GeneProductAT5G67180 (TAIR) DL4430C
TPS1GeneProductAT1G78580 (TAIR)
TSFGeneProductAT4G20370 (TAIR) Partially redundant paralog of FT
TT16GeneProductAT5G23260 (TAIR)
U2AF35AGeneProductAT1G27650 (TAIR) Splicing factor
VEL1GeneProductAT4G30200 (TAIR)
VEL2GeneProductAT2G18880 (TAIR)
VEL3GeneProductAT2G18870 (TAIR)
VIN3GeneProductAT5G57380 (TAIR)
VIP3GeneProductAT4G29830 (TAIR)
VIP4GeneProductAT5G61150 (TAIR)
VRN1GeneProductAT3G18990 (TAIR)
VRN2GeneProductAT4G16845 (TAIR)
VRN5GeneProductAT3G24440 (TAIR)
WERGeneProductAT5G14750 (TAIR) Regulates/maintains FT mRNA stability in long days. Not co-localized with FT; controls flowering through photoperiod pathway.
WNK1GeneProductAT3G04910 (TAIR)
WNK5GeneProductAT3G51630 (TAIR) mutant is late flowering (see TAIR entry): Involved in flowering: non-traceable author statement: Pavel Lizal et al 2004 Related to flowering; no pathway found.
WNK8GeneProductAT5G41990 (TAIR)
ZTLGeneProductAT5G57360 (TAIR)
bZIP13 GeneProductAT5G44080 (TAIR)
miRNA156RnaAJ493620 (EMBL)
miRNA172RnaAJ496802 (EMBL)

Annotated Interactions

No annotated interactions

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