Fatty acid beta-oxidation (Rattus norvegicus)

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Myristoyl-CoATrans-Hex-2-enoyl-CoA3-trans-decenoyl-CoATrans-Hexadecanoyl-CoA(S)-3-Hydroxyoctanoyl-CoA4-cis-dexeboyl-CoALipasesSaturated fatty acidsOctaoyl-CoA(S)-HydrocyhexanoylSee TCA Cycle pathwaySee TCA Cycle pathwayTrans-Dec-2-enoyl-CoAHexanoyl-CoASee TCA Cycle pathway(S)-3-Hydroxybutanoyl-CoA2-trans-4-cis-decadienoyl-CoA2-trans-dodecenoyl-CoASee TCA Cycle pathwayGlutarateTrans-Oct-2-enoyl-CoAFatty Acid3-Oxopalmitoyl-CoASee TCA Cycle pathwaytrans,cis-Lauro-2,6-dienoyl-CoATrans-Tetradex-2-enoyl-CoA3-Oxo-octanoyl-CoADxotetradecanoyl-CoA3-Oxododexanoyl-CoASee TCA Cycle pathwaySee Glycolysis pathway(S)-3-Hydroxytetradecanoyl-CoACronoyl-CoAButanoyl-CoA(S)-3-Hydroxydecanoyl-CoASee TCA Cycle pathway3-Oxohexanoyl-CoAcis,cis-3,6-Dodecadienoyl-CoAPalmitoyl-CoA(S)-3-Hydroxydodexanonyl-CoA(S)-3-Hydroxyhexadecanoyl-CoADecanoyl-CoA3-Oxocanoyl-CoAUnsaturated fatty acidsChkbLplAcetyl-CoAEchs1Cpt2DldHadhaGlycerolHadhaLipfHadhbHadhAcadmAcadmAcetyl-CoAAcetyl-CoADecr1DciHadhaHadhbHadhaAcadlLipeAcat1HadhaHadhbEchs1HadhHadhbAcadmLauroyl-CoAHadhaHadhaDciSlc25a20Glyceraldehyde-3-PhosphateAcetyl-CoAHadhaCratCpt1bEchs1Acsl6HadhaLipcAcsl4Gpd2HadhbHadhbL-glycerol-3-phosphateAcadsGkAcsl1HadhbDihydroxyacetone phosphateHadhAcyl-CoALinoleoyl-CoAHadhbHadhbEchs1AcadsTriacylglycerolHadhaPnpla2Acetoacetyl-CoAHadhHadhbHadhbAcetyl-CoAGk2MetaboliteAcadlAcadlHadhaAcsl5GcdhHadhbAcetyl-CoAHadhbGlutaryl-CoAAcetyl-CoAAcadlHadhaAcsl3Acss2Cpt1aAcetyl-CoAHadhHadhaEchs1AcadvlTPI1Acetyl-CoA


Description

Complete fatty acid beta-oxidation pathway for saturated and unsaturated fatty acids, developed and curated internally by BiGCaT Bioinformatics. This pathway was previously split into three parts plus a meta file for statistics. If you still have these you can replace all four with this single pathway.

Comments

HomologyConvert 
This pathway was inferred from Homo sapiens pathway WP143(r20983) with a 80% conversion rate.

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Quality Tags

Ontology Terms

 

Bibliography

No bibliography


History

View all...
CompareRevisionActionTimeUserComment
116494view10:28, 7 May 2021EweitzModified title
106960view13:42, 17 September 2019MaintBotHMDB identifier normalization
97044view15:04, 26 April 2018AdoBioInfoConnected ONE line. I'm such a good person. #makingtheworldabetterplace
93220view14:18, 4 August 2017DeSlChanged ID of 3-Oxododexanoyl-CoA to more stereospecific one.
79801view16:20, 16 April 2015Mkutmonfixed unconnected lines
70701view19:19, 28 August 2013EgonwConverted a label into a DataNode and added a Chemspider ID.
68414view17:19, 5 July 2013EgonwRemoved HMDB as data source where no identifier was given, and added a ChEBI identifier.
67228view10:23, 26 June 2013Christine ChichesterOntology Term : 'fatty acid beta degradation pathway' added !
62191view20:42, 25 April 2013Cizarmyristoyl was wrongly spelled and was not a primary name. changed to Tetradecanoyl-CoA
60547view13:29, 21 March 2013Cizarannotated crotonoyl-CoA
60483view13:28, 20 March 2013Cizarprimary names and annotated metabolite
60482view13:21, 20 March 2013Cizarchanged primary name (S)-Hydroxyoctanoyl-CoA
60481view13:16, 20 March 2013Cizarannotated Acetyl-CoA
60480view13:12, 20 March 2013CizarAnnotated Acetoacetyl-CoA
60479view12:56, 20 March 2013Cizarannotated glutaryl-CoA
60478view12:49, 20 March 2013Cizarchanged Trans-Dec-2-enoyl-CoA and (S)-3-hydroxydecanoyl-CoA
60477view12:31, 20 March 2013CizarRestored last few changes
60476view12:16, 20 March 2013Cizarchanged Trans-Dec-2-enoyl-CoA to Trans-octadec-2-enoyl-CoA
60475view12:13, 20 March 2013Cizarchanged 3-oxocanoyl-CoA to 3-oxooctadecanoyl-CoA and (s)-3-hydroxydecanoyl-CoA to (s)-3-hydroxyoctadecanoyl-CoA
60472view12:01, 20 March 2013Cizaradded 3-Oxocanoyl-CoA to 3-Oxododecanoyl-CoA
60471view11:36, 20 March 2013CizarPeriodical save, work in progress
60470view11:26, 20 March 2013Cizaradded Acetyl-CoA
60469view11:25, 20 March 2013Cizar(S)-3-Hydroxydodecanoyl-CoA
60468view11:15, 20 March 2013Cizaradded Triacylglycerol
60467view11:04, 20 March 2013CizarAdded metabolite annotation
60195view13:07, 14 March 2013SusanAdd meta ids
60186view09:20, 14 March 2013SusanAdd meta ids
60185view09:09, 14 March 2013SusanAdd meta id
60150view17:13, 13 March 2013SusanAdding meta ids
60147view16:49, 13 March 2013SusanAdding metabolite IDs
60146view16:27, 13 March 2013SusanPeriodical save, work in progress
60145view16:15, 13 March 2013SusanPeriodical save, work in progress
59684view21:06, 5 March 2013SusanPeriodical save, work in progress
41765view02:41, 2 March 2011MaintBotRemoved redundant pathway information and comments
34133view19:30, 9 December 2009MaintBotAutomatic update of empty xrefs
31903view12:47, 14 August 2009MaintBotFixed group labels
31002view01:01, 30 July 2009MaintBotNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
AcadlGeneProduct25287 (Entrez Gene)
AcadmGeneProduct24158 (Entrez Gene)
AcadsGeneProduct64304 (Entrez Gene)
AcadvlGeneProduct25363 (Entrez Gene)
Acat1GeneProduct25014 (Entrez Gene)
Acetoacetyl-CoAMetabolite
Acetyl-CoAMetabolite
Acsl1GeneProduct25288 (Entrez Gene)
Acsl3GeneProduct114024 (Entrez Gene)
Acsl4GeneProduct113976 (Entrez Gene)
Acsl5GeneProduct94340 (Entrez Gene)
Acsl6GeneProduct117243 (Entrez Gene)
Acss2GeneProduct311569 (Entrez Gene)
Acyl-CoAMetabolite9029-97-4 (CAS)
ChkbGeneProduct29367 (Entrez Gene)
Cpt1aGeneProduct25757 (Entrez Gene)
Cpt1bGeneProduct25756 (Entrez Gene)
Cpt2GeneProduct25413 (Entrez Gene)
CratGeneProduct311849 (Entrez Gene)
DciGeneProduct29740 (Entrez Gene)
Decr1GeneProduct117543 (Entrez Gene)
Dihydroxyacetone phosphateMetaboliteHMDB01473 (HMDB)
DldGeneProduct298942 (Entrez Gene)
Echs1GeneProduct140547 (Entrez Gene)
GcdhGeneProduct364975 (Entrez Gene)
Gk2GeneProduct289481 (Entrez Gene)
GkGeneProduct79223 (Entrez Gene)
Glutaryl-CoAMetabolite
Glyceraldehyde-3-PhosphateMetabolite
GlycerolMetaboliteHMDB00131 (HMDB)
Gpd2GeneProduct25062 (Entrez Gene)
HadhGeneProduct113965 (Entrez Gene)
HadhaGeneProduct170670 (Entrez Gene)
HadhbGeneProduct171155 (Entrez Gene)
L-glycerol-3-phosphateMetabolite
Lauroyl-CoAMetabolite
Linoleoyl-CoAMetabolite
LipcGeneProduct24538 (Entrez Gene)
LipeGeneProduct25330 (Entrez Gene)
LipfGeneProduct50682 (Entrez Gene)
LplGeneProduct24539 (Entrez Gene)
MetaboliteMetabolite
Pnpla2GeneProduct361676 (Entrez Gene)
Slc25a20GeneProduct117035 (Entrez Gene)
TPI1GeneProduct24849 (Entrez Gene)
TriacylglycerolMetabolite

Annotated Interactions

No annotated interactions
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