Calvin cycle (Populus trichocarpa)

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1transketolaseRuBisCO subunit bindingphosphoglycerate kinasedihydroxy-acetone phosphatecarbon dioxideRuBisCOfructose-6-phosphatefructose-1,6-bisphosphataseglyceraldehyde-3-phosphate dehydrogenasecarbonic acidribulose-5-phosphate-3-epimerasesedoheptulose-1,7-bisphosphatasefructose-1,6-bisphosphatesedoheptulose-1,7-bisphosphatasecarbonic anhydrasephosphoribulokinaseerythrose-4-phosphatexylulose-5-phosphateRuBisCO activase3-phosphoglycerateglyceraldehyde-3-phosphateribose-5-phosphatealdolaseribulose-1,5-bisphosphateribulose-5-phosphateCHOLOROPLAST1,3-bisphosphoglyceratetransketolasealdolasesedoheptulose-7-bisphosphataseribulose-5-phosphate epimeraseADPATPNADP+NADPHADPATP


Description

This plant pathway represents the Calvin cycle (chloroplast). The primary site of CO2 fixation in C3 plants. CO2 is fixated onto ribulose-1,5-bishosphate to produce 3-phosphoglycerate. Part of the 3-phosphoglycerate is exported to the glycolysis (WP2862) while the rest is regenerated into ribulose-1,5-bisphosphate. The process uses NADPH and ATP that have been generated by the photosynthetic electon transport chain.

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Quality Tags

Ontology Terms

 

Bibliography

  1. Bohler S, Sergeant K, Lefèvre I, Jolivet Y, Hoffmann L, Renaut J, Dizengremel P, Hausman JF; ''Differential impact of chronic ozone exposure on expanding and fully expanded poplar leaves.''; Tree Physiol, 2010 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
102771view21:10, 23 January 2019EgonwFixed the casing of two ChEBI identifiers (prefix should be CHEBI: instead of ChEBI:)
86996view14:39, 15 July 2016MkutmonOntology Term : 'photosynthesis pathway' added !
78143view13:17, 5 December 2014AnweshaFixed metabolite annotation
78141view12:58, 5 December 2014AnweshaAnnotated enzymes
78140view12:54, 5 December 2014AnweshaFixed Mmetabolite labels, annotations, and protein annotations
77740view12:59, 16 October 2014SbohlerModified description
77739view12:58, 16 October 2014SbohlerModified description
77731view12:39, 16 October 2014AnweshaAdded literature reference
77724view12:25, 16 October 2014SbohlerModified description
77720view12:16, 16 October 2014AnweshaNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
1,3-bisphosphoglycerateMetaboliteC00236 (KEGG Compound)
3-phosphoglycerateMetaboliteCHEBI:17050 (ChEBI)
ADPMetaboliteCHEBI:16761 (ChEBI)
ATPMetaboliteCHEBI:15422 (ChEBI)
NADP+MetaboliteCHEBI:18009 (ChEBI)
NADPHMetaboliteCHEBI:16474 (ChEBI)
RuBisCO activaseProteinA9PFQ2 (Uniprot-TrEMBL)
RuBisCO subunit bindingProteinB9HQD5 (Uniprot-TrEMBL)
RuBisCOProteinB9GXY0 (Uniprot-TrEMBL)
aldolaseProteinA9PJC9 (Uniprot-TrEMBL)
carbon dioxideMetaboliteCHEBI:16526 (ChEBI)
carbonic acidMetaboliteCHEBI:28976 (ChEBI)
carbonic anhydraseProteinQ41088 (Uniprot-TrEMBL)
dihydroxy-acetone phosphateMetabolite
erythrose-4-phosphateMetabolite
fructose-1,6-bisphosphataseProtein
fructose-1,6-bisphosphateMetabolite
fructose-6-phosphateMetabolite
glyceraldehyde-3-phosphate dehydrogenaseProteinQ9SNX8 (Uniprot-TrEMBL)
glyceraldehyde-3-phosphateMetaboliteCHEBI:17050 (ChEBI)
phosphoglycerate kinaseProteinB9HY29 (Uniprot-TrEMBL)
phosphoribulokinaseProtein
ribose-5-phosphateMetaboliteCHEBI:17050 (ChEBI)
ribulose-1,5-bisphosphateMetaboliteCHEBI:17050 (ChEBI)
ribulose-5-phosphate epimeraseProtein
ribulose-5-phosphate-3-epimeraseProtein
ribulose-5-phosphateMetaboliteCHEBI:17050 (ChEBI)
sedoheptulose-1,7-bisphosphataseProtein
sedoheptulose-7-bisphosphataseMetabolite
transketolaseProteinB9GPE7 (Uniprot-TrEMBL)
xylulose-5-phosphateMetabolite

Annotated Interactions

No annotated interactions

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