Biocrates metabolites overview (Homo sapiens)

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1C0AspD-form L-form DL-formAmino acids & biogenic aminesAlaCarnitineL-alanineD-alanineL-arginineD-arginineL-asparagineD-asparagineDL-asparganineL-Aspartic AcidD-Aspartic AcidDL-aspartic acidL-citrullineD-citrullineL-glutamineD-glutamineL-glutamic acidD-glutamic acidDL-glutamic acidglycineL-histidineD-histidineL-isoleucineD-isoleucineL-leucineD-leucineL-lysineD-lysineDL-lysineL-methionineD-methionineDL-methionineL-ornithineD-ornithineL-phenylalanineD-phenylalanineL-prolineD-prolineDL-prolineL-serineD-serineDL-serineL-thereonieD-threonineL-tryptophanD-tryptophanL-tyrosineD-tyrosineDL-tyrosineL-valineD-valineAcetyl-OrnithineN,N-dimethylarginineDL-alpha-Aminoadipic acid4-hydroxyprolineCarnosineCreatinineL-DOPAD-DOPADopamineHistamineKynureninemethionine S-oxide3-nitro-L-tyrosine3-nitro-D-tyrosinephenethylaminePutrescineSarcosineSerotoninSpermidineSperminetrans-4-hydroxyprolineTaurinesymmetric dimethylarginineAcylcarnitineslevocarnitineAcetylcarnitine(+/-)-acetylcarnitine(+)-acetylcarnitineL-PropionylcarnitineO-propenoyl-D-carnitine(R)-3-hydroxybutyrylcarnitinehydroxypropionyl-L-carnitineO-butanoylcarnitineO-butanoyl-L-carnitineButenyl-L-carnitineO-valeroyl-L-carnitineO-tiglyl-L-carnitineO-glutaconyl-R-carnitineO-glutaconyl-L-carnitineO-glutarylcarnitineO-glutaroyl-L-carnitineO-3-methylglutaryl-L-carnitineO-(3-hydroxyvaleryl)-L-carnitineO-hexanoyl-DL-carnitine2-Hexenoyl-L-carnitineO-pimelyl-L-carnitineO-PimelylcarnitineOctanoylcarnitine (uncharged)O-octanoyl-L-carnitine(charged)O-octanoylcarnitineO-Nonaylcarnitine(+/-)DecanoylcarnitineO-[(4Z)-decenoyl]carnitine9-DecenoylcarnitineO-linoleyl-L-carnitine(aka Decadienylcarnitine)(+/-)-lauroylcarnitine(aka Dodecanoylcarnitine)O-[(5Z)-dodecenoyl]carnitinetrans-2-DodecenoylcarnitineO-Dodecanedioylcarnitine(5E)-tetradecenoyl-L-carnitine (Q27225323)(+/-)-myristoylcarnitine(aka Tetradecanoylcarnitine)O-[(9Z)-tetradecenoyl]-L-carnitinetrans-2-Tetradecenoylcarnitine(5Z)-tetradecenoylcarnitineO-[(5Z)-tetradecenoyl]-L-carnitine3-Hydroxy-cis-5-tetradecenoylcarnitineTetradecadienylcarnitineMetaboliteHydroxytetradecadienylcarnitine(-)-palmitoyl carnitine(+/-)-palmitoyl carnitine9-HexadecenoylcarnitineO-palmitoleoylcarnitine(2E)-hexadecenoylcarnitineHydroxyhexadecenoylcarnitineO-(hydroxyhexadecenoyl)carnitine9,12-Hexadecadienoyl-L-carnitine(9Z,12Z)-3-hydroxyhexadecadienoylcarnitine3-Hydroxyhexadecadienoylcarnitine3-hydroxyhexadecanoylcarnitineO-stearoylcarnitineO-octadecanoyl-L-carnitine11Z-Octadecenylcarnitine(9Z)-3-hydroxyoctadecenoylcarnitineO-linoleyl-L-carnitineD-form L-form DL-formGlnArgGlyAsnHisCitIleGluOrnLeuProLysThrMetValPheAc-OrnSerCarnosineADMADOPAalpha-AAAHistaminec4-OH-ProKynurenineCreatinineMet-SODopamineSarcosineNitro-TyrSpermidinePEAt4-OH-ProPutrescineTaurineSerotoninSDMASpermineTrpTyrAbbreviationsC2C3C3:1C3-DC (C4-OH)C3-OHC4C4:1C5C5:1C5:1-DCC5-DC (C6-OH)C5-M-DCC5-OH (C3-DC-M)C6 (C4:1-DC)C6:1C7-DCC8C9C10C10:1C10:2C12C12:1C12-DCC14C14:1C14:1-OHC14:2C14:2-OHC16C16:1C16:1-OHC16:2C16:2-OHC16-OHC18C18:1C18:1-OHC18:2Abbreviations


Description

This pathway contains metabolites which can be measured by the Biocrates lab (http://www.biocrates.com/).

All nodes are annotated with Wikidata identifiers, to take the different stereo-isomers which could exist in other pathways into account. With help of BridgeDb, the annotations in this pathway are linked to several other databases (such a HMDB, ChEBI, Pubchem etc.).

This pathway can be used to annotate your own Biocrates data-set, as well as being a starting point to visualise statistical analysis in one go.

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View approved pathways at the new wikipathways.org.

Quality Tags

Ontology Terms

 

Bibliography

  1. Griffiths WJ, Koal T, Wang Y, Kohl M, Enot DP, Deigner HP; ''Targeted metabolomics for biomarker discovery.''; Angew Chem Int Ed Engl, 2010 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
127472view13:10, 8 October 2023EgonwOntology Term : 'classic metabolic pathway' added !
124678view12:21, 22 November 2022EgonwReplaced outdated Wikidata identifiers with better identifiers
117664view11:55, 22 May 2021EweitzModified title
100065view16:27, 31 October 2018DeSlConnected abbreviations for steorids to annotated datanodes by grouping.
100043view16:25, 31 October 2018DeSlAdded and annotated steroids group.
99975view16:15, 31 October 2018DeSlAnnotated and grouped hexose Datanode to abbr.
99965view16:14, 31 October 2018DeSlConnected sphingomeyelin abbreviations to annotated nodes with groups.
99958view16:13, 31 October 2018DeSlAnnotated Sphingomeylins
99912view16:06, 31 October 2018DeSlConnected abbreviations and annotated DataNodes in groups for lysophosphatidylcholines.
99901view16:05, 31 October 2018DeSlAnnotated Lysophosphatidylcholines.
99823view15:48, 31 October 2018DeSlChanged layout, added three more groups (as text labels).
99782view15:18, 31 October 2018DeSlAdded Acylcarnitines to comments for group.
99743view15:13, 31 October 2018DeSlAdded Amino Acids & Biogenic Amines group to comment.
99664view15:06, 31 October 2018DeSlAdded lit. ref
96710view06:09, 29 March 2018EgonwFixed a data source typo.
96709view15:35, 28 March 2018DeSlAdded specific labels for acylcarnitines
96708view14:27, 28 March 2018DeSlAdded specific text labels for the amino acid nodes
96706view08:24, 28 March 2018DeSlModified description
96705view08:19, 28 March 2018DeSlChanged positioning of Abbreviation to match metabolite nodes
96704view08:19, 28 March 2018DeSlFinalised acylcarnitines IDs
96702view07:55, 28 March 2018DeSlAdded even more IDs for acylcarnitines
96701view07:51, 28 March 2018DeSlAdded more IDs for acylcarnitine
96700view07:37, 28 March 2018DeSlStarted adding Acylcarnitines-group
96567view11:08, 20 March 2018DeSlNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
(+)-acetylcarnitineMetaboliteQ27074154 (Wikidata)
(+/-)-acetylcarnitineMetaboliteQ27140241 (Wikidata)
(+/-)-lauroylcarnitine(aka Dodecanoylcarnitine)MetaboliteQ27140264 (Wikidata)
(+/-)-myristoylcarnitine(aka Tetradecanoylcarnitine)MetaboliteQ27140270 (Wikidata)
(+/-)-palmitoyl carnitineMetaboliteQ7128408 (Wikidata)
(+/-)DecanoylcarnitineMetaboliteQ27137205 (Wikidata)
(-)-palmitoyl carnitineMetaboliteQ27102424 (Wikidata)
(2E)-hexadecenoylcarnitineMetaboliteQ27158854 (Wikidata)
(5E)-tetradecenoyl-L-carnitine (Q27225323)MetaboliteQ27225323 (Wikidata)
(5Z)-tetradecenoylcarnitineMetaboliteQ27140269 (Wikidata)
(9Z)-3-hydroxyoctadecenoylcarnitineMetaboliteQ27140283 (Wikidata)
(9Z,12Z)-3-hydroxyhexadecadienoylcarnitineMetaboliteQ27140311 (Wikidata)
(R)-3-hydroxybutyrylcarnitineMetaboliteQ27158110 (Wikidata)
11Z-OctadecenylcarnitineMetaboliteQ27161932 (Wikidata)
2-Hexenoyl-L-carnitineMetaboliteQ27160712 (Wikidata)
3-Hydroxy-cis-5-tetradecenoylcarnitineMetaboliteQ27161937 (Wikidata)
3-HydroxyhexadecadienoylcarnitineMetaboliteQ46006671 (Wikidata)
3-hydroxyhexadecanoylcarnitineMetaboliteQ27140278 (Wikidata)
3-nitro-D-tyrosineMetaboliteQ27159043 (Wikidata)
3-nitro-L-tyrosineMetaboliteQ412383 (Wikidata)
4-hydroxyprolineMetaboliteQ411237 (Wikidata)
9,12-Hexadecadienoyl-L-carnitineMetaboliteQ27161934 (Wikidata)
9-DecenoylcarnitineMetaboliteQ27160433 (Wikidata)
9-HexadecenoylcarnitineMetaboliteQ27160434 (Wikidata)
Acetyl-OrnithineMetaboliteQ26690116 (Wikidata)
AcetylcarnitineMetaboliteQ311992 (Wikidata)
Butenyl-L-carnitineMetaboliteQ27160747 (Wikidata)
CarnitineMetaboliteQ243309 (Wikidata)
Carnosine MetaboliteQ413822 (Wikidata)
CreatinineMetaboliteQ426660 (Wikidata)
D-Aspartic AcidMetaboliteQ27076990 (Wikidata)
D-DOPAMetaboliteQ3738328 (Wikidata)
D-alanineMetaboliteQ27076975 (Wikidata)
D-arginineMetaboliteQ27076987 (Wikidata)
D-asparagineMetaboliteQ27094804 (Wikidata)
D-citrullineMetaboliteQ27077003 (Wikidata)
D-glutamic acidMetaboliteQ27077040 (Wikidata)
D-glutamineMetaboliteQ27102193 (Wikidata)
D-histidineMetaboliteQ27077043 (Wikidata)
D-isoleucineMetaboliteQ27103290 (Wikidata)
D-leucineMetaboliteQ16081973 (Wikidata)
D-lysineMetaboliteQ27077084 (Wikidata)
D-methionineMetaboliteQ27093862 (Wikidata)
D-ornithineMetaboliteQ27077099 (Wikidata)
D-phenylalanineMetaboliteQ26841253 (Wikidata)
D-prolineMetaboliteQ20035962 (Wikidata)
D-serineMetaboliteQ27077119 (Wikidata)
D-threonineMetaboliteQ44073885 (Wikidata)
D-tryptophanMetaboliteQ27077125 (Wikidata)
D-tyrosineMetaboliteQ16082044 (Wikidata)
D-valine MetaboliteQ27103152 (Wikidata)
DL-alpha-Aminoadipic acidMetaboliteQ44075060 (Wikidata)
DL-asparganineMetaboliteQ185906 (Wikidata)
DL-aspartic acidMetaboliteQ27109481 (Wikidata)
DL-glutamic acidMetaboliteQ181136 (Wikidata)
DL-lysineMetaboliteQ178430 (Wikidata)
DL-methionineMetaboliteQ180341 (Wikidata)
DL-prolineMetaboliteQ484583 (Wikidata)
DL-serineMetaboliteQ26997410 (Wikidata)
DL-tyrosineMetaboliteQ27102882 (Wikidata)
DopamineMetaboliteQ170304 (Wikidata)
HistamineMetaboliteQ61233 (Wikidata)
HydroxyhexadecenoylcarnitineMetaboliteQ46005889 (Wikidata)
KynurenineMetaboliteQ32908783 (Wikidata)
L-Aspartic AcidMetaboliteQ178450 (Wikidata)
L-DOPA MetaboliteQ300989 (Wikidata)
L-PropionylcarnitineMetaboliteQ27103933 (Wikidata)
L-alanineMetaboliteQ218642 (Wikidata)
L-arginineMetaboliteQ173670 (Wikidata)
L-asparagineMetaboliteQ29519883 (Wikidata)
L-citrullineMetaboliteQ408641 (Wikidata)
L-glutamic acidMetaboliteQ44065455 (Wikidata)
L-glutamineMetaboliteQ181619 (Wikidata)
L-histidineMetaboliteQ485277 (Wikidata)
L-isoleucineMetaboliteQ484940 (Wikidata)
L-leucineMetaboliteQ483745 (Wikidata)
L-lysineMetaboliteQ20816880 (Wikidata)
L-methionineMetaboliteQ22124685 (Wikidata)
L-ornithineMetaboliteQ44067342 (Wikidata)
L-phenylalanineMetaboliteQ170545 (Wikidata)
L-prolineMetaboliteQ20035886 (Wikidata)
L-serineMetaboliteQ183290 (Wikidata)
L-thereonieMetaboliteQ186521 (Wikidata)
L-tryptophanMetaboliteQ181003 (Wikidata)
L-tyrosineMetaboliteQ188017 (Wikidata)
L-valineMetaboliteQ483752 (Wikidata)
MetaboliteHydroxytetradecadienylcarnitineMetaboliteQ46005542 (Wikidata)
N,N-dimethylarginineMetaboliteQ752685 (Wikidata)
O-(3-hydroxyvaleryl)-L-carnitineMetaboliteQ27162521 (Wikidata)
O-(hydroxyhexadecenoyl)carnitineMetaboliteQ46006075 (Wikidata)
O-3-methylglutaryl-L-carnitineMetaboliteQ27139149 (Wikidata)
O-DodecanedioylcarnitineMetaboliteQ27144433 (Wikidata)
O-NonaylcarnitineMetaboliteQ27139241 (Wikidata)
O-PimelylcarnitineMetaboliteQ27158882 (Wikidata)
O-[(4Z)-decenoyl]carnitineMetaboliteQ27140258 (Wikidata)
O-[(5Z)-dodecenoyl]carnitineMetaboliteQ27140263 (Wikidata)
O-[(5Z)-tetradecenoyl]-L-carnitineMetaboliteQ27157963 (Wikidata)
O-[(9Z)-tetradecenoyl]-L-carnitineMetaboliteQ27157962 (Wikidata)
O-butanoyl-L-carnitineMetaboliteQ27109418 (Wikidata)
O-butanoylcarnitineMetaboliteQ27107557 (Wikidata)
O-glutaconyl-L-carnitineMetaboliteQ46003628 (Wikidata)
O-glutaconyl-R-carnitineMetaboliteQ27158615 (Wikidata)
O-glutaroyl-L-carnitineMetaboliteQ27156488 (Wikidata)
O-glutarylcarnitineMetaboliteQ27140253 (Wikidata)
O-hexanoyl-DL-carnitineMetaboliteQ27139060 (Wikidata)
O-linoleyl-L-carnitine(aka Decadienylcarnitine)MetaboliteQ27157478 (Wikidata)
O-linoleyl-L-carnitineMetaboliteQ27157478 (Wikidata)
O-octadecanoyl-L-carnitineMetaboliteQ27157960 (Wikidata)
O-octanoyl-L-carnitine (charged)MetaboliteQ27102821 (Wikidata)
O-octanoylcarnitineMetaboliteQ27140252 (Wikidata)
O-palmitoleoylcarnitineMetaboliteQ27140275 (Wikidata)
O-pimelyl-L-carnitineMetaboliteQ27158620 (Wikidata)
O-propenoyl-D-carnitineMetaboliteQ27158876 (Wikidata)
O-stearoylcarnitineMetaboliteQ27140281 (Wikidata)
O-tiglyl-L-carnitineMetaboliteQ27139422 (Wikidata)
O-valeroyl-L-carnitineMetaboliteQ27158330 (Wikidata)
Octanoylcarnitine (uncharged)MetaboliteQ27464087 (Wikidata)
PutrescineMetaboliteQ410190 (Wikidata)
SarcosineMetaboliteQ414157 (Wikidata)
SerotoninMetaboliteQ167934 (Wikidata)
SpermidineMetaboliteQ418834 (Wikidata)
SpermineMetaboliteQ424597 (Wikidata)
TaurineMetaboliteQ207051 (Wikidata)
TetradecadienylcarnitineMetaboliteQ46005334 (Wikidata)
glycineMetaboliteQ620730 (Wikidata)
hydroxypropionyl-L-carnitineMetaboliteQ46002547 (Wikidata)
levocarnitineMetaboliteQ20735709 (Wikidata)
methionine S-oxide MetaboliteQ6823656 (Wikidata)
phenethylamineMetaboliteQ407411 (Wikidata)
symmetric dimethylarginineMetaboliteQ27088766 (Wikidata)
trans-2-DodecenoylcarnitineMetaboliteQ27161908 (Wikidata)
trans-2-TetradecenoylcarnitineMetaboliteQ27161907 (Wikidata)
trans-4-hydroxyprolineMetaboliteQ27089020 (Wikidata)

Annotated Interactions

No annotated interactions

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