Biocrates metabolites overview (Homo sapiens)
From WikiPathways
Description
This pathway contains metabolites which can be measured by the Biocrates lab (http://www.biocrates.com/).
All nodes are annotated with Wikidata identifiers, to take the different stereo-isomers which could exist in other pathways into account. With help of BridgeDb, the annotations in this pathway are linked to several other databases (such a HMDB, ChEBI, Pubchem etc.).
This pathway can be used to annotate your own Biocrates data-set, as well as being a starting point to visualise statistical analysis in one go.Quality Tags
Ontology Terms
Bibliography
- Griffiths WJ, Koal T, Wang Y, Kohl M, Enot DP, Deigner HP; ''Targeted metabolomics for biomarker discovery.''; Angew Chem Int Ed Engl, 2010 PubMed Europe PMC Scholia
History
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External references
DataNodes
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Name | Type | Database reference | Comment |
---|---|---|---|
(+)-acetylcarnitine | Metabolite | Q27074154 (Wikidata) | Acylcarnitines |
(+/-)-acetylcarnitine | Metabolite | Q27140241 (Wikidata) | Acylcarnitines |
(+/-)-lauroylcarnitine(aka Dodecanoylcarnitine) | Metabolite | Q27140264 (Wikidata) | Acylcarnitines |
(+/-)-myristoylcarnitine(aka Tetradecanoylcarnitine) | Metabolite | Q27140270 (Wikidata) | Acylcarnitines |
(+/-)-palmitoyl carnitine | Metabolite | Q7128408 (Wikidata) | Acylcarnitines |
(+/-)Decanoylcarnitine | Metabolite | Q27137205 (Wikidata) | Acylcarnitines |
(-)-palmitoyl carnitine | Metabolite | Q27102424 (Wikidata) | Acylcarnitines |
(2E)-hexadecenoylcarnitine | Metabolite | Q27158854 (Wikidata) | Acylcarnitines |
(5E)-tetradecenoyl-L-carnitine (Q27225323) | Metabolite | Q27225323 (Wikidata) | Acylcarnitines |
(5Z)-tetradecenoylcarnitine | Metabolite | Q27140269 (Wikidata) | Acylcarnitines |
(9Z)-3-hydroxyoctadecenoylcarnitine | Metabolite | Q27140283 (Wikidata) | Acylcarnitines |
(9Z,12Z)-3-hydroxyhexadecadienoylcarnitine | Metabolite | Q27140311 (Wikidata) | Acylcarnitines |
(R)-3-hydroxybutyrylcarnitine | Metabolite | Q27158110 (Wikidata) | Acylcarnitines |
1-[(11Z)-octadecenoyl]-sn-glycero-3-phosphocholine | Metabolite | Q27159034 (Wikidata) | Lysophosphatidylcholines |
1-[(1Z,9Z)-octadecadienyl]-sn-glycero-3-phosphocholine | Metabolite | Q27158041 (Wikidata) | Lysophosphatidylcholines |
1-[(8Z,11Z,14Z)-icosatrienoyl]-sn-glycero-3-phosphocholine | Metabolite | Q27159035 (Wikidata) | Lysophosphatidylcholines |
1-[(8Z,11Z,14Z,17Z)-icosatetraenoyl]-sn-glycero-3-phosphocholine | Metabolite | Q27159037 (Wikidata) | Lysophosphatidylcholines |
1-[(9Z)-hexadecenoyl]-sn-glycero-3-phosphocholine | Metabolite | Q27144179 (Wikidata) | Lysophosphatidylcholines |
1-arachidonoyl-sn-glycero-3-phosphocholine | Metabolite | Q27144625 (Wikidata) | Lysophosphatidylcholines |
1-heptadecanoyl-sn-glycero-3-phosphocholine | Metabolite | Q27144623 (Wikidata) | Lysophosphatidylcholines |
1-hexacosanoyl-2-hydroxy-sn-glycero-3-phosphocholine | Metabolite | Q47012752 (Wikidata) | Lysophosphatidylcholines |
1-hexadecanoyl-sn-glycero-3-phosphocholine | Metabolite | Q27105001 (Wikidata) | Lysophosphatidylcholines |
1-linoleoyl-sn-glycero-3-phosphocholine | Metabolite | Q27103871 (Wikidata) | Lysophosphatidylcholines |
1-meadoyl-sn-glycero-3-phosphocholine | Metabolite | Q27144624 (Wikidata) | Lysophosphatidylcholines |
1-myristoyl-sn-glycero-3-phosphocholine | Metabolite | Q27133313 (Wikidata) | Lysophosphatidylcholines |
1-stearoyl-lysophosphatidylcholine | Metabolite | Q27071327 (Wikidata) | Lysophosphatidylcholines |
1-tetracosanoyl-sn-glycero-3-phosphocholine | Metabolite | Q27159039 (Wikidata) | Lysophosphatidylcholines |
11Z-Octadecenylcarnitine | Metabolite | Q27161932 (Wikidata) | Acylcarnitines |
2-Hexenoyl-L-carnitine | Metabolite | Q27160712 (Wikidata) | Acylcarnitines |
3-Hydroxy-cis-5-tetradecenoylcarnitine | Metabolite | Q27161937 (Wikidata) | Acylcarnitines |
3-Hydroxyhexadecadienoylcarnitine | Metabolite | Q46006671 (Wikidata) | Acylcarnitines |
3-hydroxyhexadecanoylcarnitine | Metabolite | Q27140278 (Wikidata) | Acylcarnitines |
3-nitro-D-tyrosine | Metabolite | Q27159043 (Wikidata) | Amino acids & biogenic amines |
3-nitro-L-tyrosine | Metabolite | Q412383 (Wikidata) | Amino acids & biogenic amines |
4-hydroxyproline | Metabolite | Q411237 (Wikidata) | Amino acids & biogenic amines |
9,12-Hexadecadienoyl-L-carnitine | Metabolite | Q27161934 (Wikidata) | Acylcarnitines |
9-Decenoylcarnitine | Metabolite | Q27160433 (Wikidata) | Acylcarnitines |
9-Hexadecenoylcarnitine | Metabolite | Q27160434 (Wikidata) | Acylcarnitines |
Acetyl-Ornithine | Metabolite | Q26690116 (Wikidata) | Amino acids & biogenic amines |
Acetylcarnitine | Metabolite | Q311992 (Wikidata) | Acylcarnitines |
Butenyl-L-carnitine | Metabolite | Q27160747 (Wikidata) | Acylcarnitines |
Carnitine | Metabolite | Q243309 (Wikidata) | Acylcarnitines |
Carnosine | Metabolite | Q413822 (Wikidata) | Amino acids & biogenic amines |
Creatinine | Metabolite | Q426660 (Wikidata) | Amino acids & biogenic amines |
D-Aspartic Acid | Metabolite | Q27076990 (Wikidata) | Amino acids & biogenic amines |
D-DOPA | Metabolite | Q3738328 (Wikidata) | Amino acids & biogenic amines |
D-alanine | Metabolite | Q27076975 (Wikidata) | Amino acids & biogenic amines |
D-arginine | Metabolite | Q27076987 (Wikidata) | Amino acids & biogenic amines |
D-asparagine | Metabolite | Q27094804 (Wikidata) | Amino acids & biogenic amines |
D-citrulline | Metabolite | Q27077003 (Wikidata) | Amino acids & biogenic amines |
D-glutamic acid | Metabolite | Q27077040 (Wikidata) | Amino acids & biogenic amines |
D-glutamine | Metabolite | Q27102193 (Wikidata) | Amino acids & biogenic amines |
D-histidine | Metabolite | Q27077043 (Wikidata) | Amino acids & biogenic amines |
D-isoleucine | Metabolite | Q27103290 (Wikidata) | Amino acids & biogenic amines |
D-leucine | Metabolite | Q16081973 (Wikidata) | Amino acids & biogenic amines |
D-lysine | Metabolite | Q27077084 (Wikidata) | Amino acids & biogenic amines |
D-methionine | Metabolite | Q27093862 (Wikidata) | Amino acids & biogenic amines |
D-ornithine | Metabolite | Q27077099 (Wikidata) | Amino acids & biogenic amines |
D-phenylalanine | Metabolite | Q26841253 (Wikidata) | Amino acids & biogenic amines |
D-proline | Metabolite | Q20035962 (Wikidata) | Amino acids & biogenic amines |
D-serine | Metabolite | Q27077119 (Wikidata) | Amino acids & biogenic amines |
D-threonine | Metabolite | Q44073885 (Wikidata) | Amino acids & biogenic amines |
D-tryptophan | Metabolite | Q27077125 (Wikidata) | Amino acids & biogenic amines |
D-tyrosine | Metabolite | Q16082044 (Wikidata) | Amino acids & biogenic amines |
D-valine | Metabolite | Q27103152 (Wikidata) | Amino acids & biogenic amines |
DL-alpha-Aminoadipic acid | Metabolite | Q44075060 (Wikidata) | Amino acids & biogenic amines |
DL-asparganine | Metabolite | Q185906 (Wikidata) | Amino acids & biogenic amines |
DL-aspartic acid | Metabolite | Q27109481 (Wikidata) | Amino acids & biogenic amines |
DL-glutamic acid | Metabolite | Q181136 (Wikidata) | Amino acids & biogenic amines |
DL-lysine | Metabolite | Q178430 (Wikidata) | Amino acids & biogenic amines |
DL-methionine | Metabolite | Q180341 (Wikidata) | Amino acids & biogenic amines |
DL-proline | Metabolite | Q484583 (Wikidata) | Amino acids & biogenic amines |
DL-serine | Metabolite | Q26997410 (Wikidata) | Amino acids & biogenic amines |
DL-tyrosine | Metabolite | Q27102882 (Wikidata) | Amino acids & biogenic amines |
Dopamine | Metabolite | Q170304 (Wikidata) | Amino acids & biogenic amines |
Hexose (aka α-D-galactose) | Metabolite | Q181381 (Wikidata) | Hexoses |
Histamine | Metabolite | Q61233 (Wikidata) | Amino acids & biogenic amines |
Hydroxyhexadecenoylcarnitine | Metabolite | Q46005889 (Wikidata) | Acylcarnitines |
Kynurenine | Metabolite | Q32908783 (Wikidata) | Amino acids & biogenic amines |
L-Aspartic Acid | Metabolite | Q178450 (Wikidata) | Amino acids & biogenic amines |
L-DOPA | Metabolite | Q300989 (Wikidata) | Amino acids & biogenic amines |
L-Propionylcarnitine | Metabolite | Q27103933 (Wikidata) | Acylcarnitines |
L-alanine | Metabolite | Q218642 (Wikidata) | Amino acids & biogenic amines |
L-arginine | Metabolite | Q173670 (Wikidata) | Amino acids & biogenic amines |
L-asparagine | Metabolite | Q29519883 (Wikidata) | Amino acids & biogenic amines |
L-citrulline | Metabolite | Q408641 (Wikidata) | Amino acids & biogenic amines |
L-glutamic acid | Metabolite | Q44065455 (Wikidata) | Amino acids & biogenic amines |
L-glutamine | Metabolite | Q181619 (Wikidata) | Amino acids & biogenic amines |
L-histidine | Metabolite | Q485277 (Wikidata) | Amino acids & biogenic amines |
L-isoleucine | Metabolite | Q484940 (Wikidata) | Amino acids & biogenic amines |
L-leucine | Metabolite | Q483745 (Wikidata) | Amino acids & biogenic amines |
L-lysine | Metabolite | Q20816880 (Wikidata) | Amino acids & biogenic amines |
L-methionine | Metabolite | Q22124685 (Wikidata) | Amino acids & biogenic amines |
L-ornithine | Metabolite | Q44067342 (Wikidata) | Amino acids & biogenic amines |
L-phenylalanine | Metabolite | Q170545 (Wikidata) | Amino acids & biogenic amines |
L-proline | Metabolite | Q20035886 (Wikidata) | Amino acids & biogenic amines |
L-serine | Metabolite | Q183290 (Wikidata) | Amino acids & biogenic amines |
L-thereonie | Metabolite | Q186521 (Wikidata) | Amino acids & biogenic amines |
L-tryptophan | Metabolite | Q181003 (Wikidata) | Amino acids & biogenic amines |
L-tyrosine | Metabolite | Q188017 (Wikidata) | Amino acids & biogenic amines |
L-valine | Metabolite | Q483752 (Wikidata) | Amino acids & biogenic amines |
MetaboliteHydroxytetradecadienylcarnitine | Metabolite | Q46005542 (Wikidata) | Acylcarnitines |
Metabolite | Metabolite | Q243309 (Wikidata) | Lysophosphatidylcholines |
N,N-dimethylarginine | Metabolite | Q752685 (Wikidata) | Amino acids & biogenic amines |
N-(17Z-hexacosenoyl)-sphingosine-1-phosphocholine | Metabolite | Q27157791 (Wikidata) | Sphingomyelins |
N-(Octadecanoyl)-sphinganine-1-phosphocholine | Metabolite | Q27161676 (Wikidata) | Sphingomyelins |
N-[(13Z)-3-hydroxydocos-13-enoyl]sphingosine-1-phosphocholine | Metabolite | Q27162236 (Wikidata) | Sphingomyelins |
N-[(13Z,16Z)-3-hydroxydocosa-13,16-enoyl]sphingosine-1-phosphocholine | Metabolite | Q27162228 (Wikidata) | Sphingomyelins |
N-[(15Z)-3-hydroxytetracos-15-enoyl]sphingosine-1-phosphocholine | Metabolite | Q27162232 (Wikidata) | Sphingomyelins |
N-[(15Z)-tetracosenoyl]sphing-4-enine-1-phosphocholine | Metabolite | Q27144714 (Wikidata) | Sphingomyelins |
N-[(9Z)-3-hydroxyhexadec-9-enoyl]sphingosine-1-phosphocholine | Metabolite | Q27162233 (Wikidata) | Sphingomyelins |
N-[(9Z)-3-hydroxytetradec-9-enoyl]sphingosine-1-phosphocholine | Metabolite | Q27162237 (Wikidata) | Sphingomyelins |
N-hexacosanoylsphingosine-1-phosphocholine | Metabolite | Q27105094 (Wikidata) | Sphingomyelins |
N-lignoceroylsphingosine-1-phosphocholine | Metabolite | Q27105093 (Wikidata) | Sphingomyelins |
N-oleoylsphingosine-1-phosphocholine | Metabolite | Q27157798 (Wikidata) | Sphingomyelins |
N-palmitoylsphingomyelin | Metabolite | Q27105084 (Wikidata) | Sphingomyelins |
O-(3-hydroxyvaleryl)-L-carnitine | Metabolite | Q27162521 (Wikidata) | Acylcarnitines |
O-(hydroxyhexadecenoyl)carnitine | Metabolite | Q46006075 (Wikidata) | Acylcarnitines |
O-3-methylglutaryl-L-carnitine | Metabolite | Q27139149 (Wikidata) | Acylcarnitines |
O-Dodecanedioylcarnitine | Metabolite | Q27144433 (Wikidata) | Acylcarnitines |
O-Nonaylcarnitine | Metabolite | Q27139241 (Wikidata) | Acylcarnitines |
O-Pimelylcarnitine | Metabolite | Q27158882 (Wikidata) | Acylcarnitines |
O-[(4Z)-decenoyl]carnitine | Metabolite | Q27140258 (Wikidata) | Acylcarnitines |
O-[(5Z)-dodecenoyl]carnitine | Metabolite | Q27140263 (Wikidata) | Acylcarnitines |
O-[(5Z)-tetradecenoyl]-L-carnitine | Metabolite | Q27157963 (Wikidata) | Acylcarnitines |
O-[(9Z)-tetradecenoyl]-L-carnitine | Metabolite | Q27157962 (Wikidata) | Acylcarnitines |
O-butanoyl-L-carnitine | Metabolite | Q27109418 (Wikidata) | Acylcarnitines |
O-butanoylcarnitine | Metabolite | Q27107557 (Wikidata) | Acylcarnitines |
O-glutaconyl-L-carnitine | Metabolite | Q46003628 (Wikidata) | Acylcarnitines |
O-glutaconyl-R-carnitine | Metabolite | Q27158615 (Wikidata) | Acylcarnitines |
O-glutaroyl-L-carnitine | Metabolite | Q27156488 (Wikidata) | Acylcarnitines |
O-glutarylcarnitine | Metabolite | Q27140253 (Wikidata) | Acylcarnitines |
O-hexanoyl-DL-carnitine | Metabolite | Q27139060 (Wikidata) | Acylcarnitines |
O-linoleyl-L-carnitine(aka Decadienylcarnitine) | Metabolite | Q27157478 (Wikidata) | Acylcarnitines |
O-linoleyl-L-carnitine | Metabolite | Q27157478 (Wikidata) | Acylcarnitines |
O-octadecanoyl-L-carnitine | Metabolite | Q27157960 (Wikidata) | Acylcarnitines |
O-octanoyl-L-carnitine (charged) | Metabolite | Q27102821 (Wikidata) | Acylcarnitines |
O-octanoylcarnitine | Metabolite | Q27140252 (Wikidata) | Acylcarnitines |
O-palmitoleoylcarnitine | Metabolite | Q27140275 (Wikidata) | Acylcarnitines |
O-pimelyl-L-carnitine | Metabolite | Q27158620 (Wikidata) | Acylcarnitines |
O-propenoyl-D-carnitine | Metabolite | Q27158876 (Wikidata) | Acylcarnitines |
O-stearoylcarnitine | Metabolite | Q27140281 (Wikidata) | Acylcarnitines |
O-tiglyl-L-carnitine | Metabolite | Q27139422 (Wikidata) | Acylcarnitines |
O-valeroyl-L-carnitine | Metabolite | Q27158330 (Wikidata) | Acylcarnitines |
Octanoylcarnitine (uncharged) | Metabolite | Q27464087 (Wikidata) | Acylcarnitines |
Putrescine | Metabolite | Q410190 (Wikidata) | Amino acids & biogenic amines |
SM C16:1 | Metabolite | Q27161282 (Wikidata) | Sphingomyelins |
SM(D18:0/22:3(10Z,13Z,16Z)) | Metabolite | Q27162227 (Wikidata) | Sphingomyelins |
SM(d18:0/20:2(11Z,14Z)) | Metabolite | Q27162235 (Wikidata) | Sphingomyelins |
Sarcosine | Metabolite | Q414157 (Wikidata) | Amino acids & biogenic amines |
Serotonin | Metabolite | Q167934 (Wikidata) | Amino acids & biogenic amines |
Spermidine | Metabolite | Q418834 (Wikidata) | Amino acids & biogenic amines |
Spermine | Metabolite | Q424597 (Wikidata) | Amino acids & biogenic amines |
Taurine | Metabolite | Q207051 (Wikidata) | Amino acids & biogenic amines |
Tetradecadienylcarnitine | Metabolite | Q46005334 (Wikidata) | Acylcarnitines |
[(2R)-2-hydroxy-3-[(E)-octacos-5-enoyl]oxypropyl] 2-(trimethylazaniumyl)ethyl phosphate | Metabolite | Q47012765 (Wikidata) | Lysophosphatidylcholines |
[(2R)-2-hydroxy-3-octacosanoyloxypropyl] 2-(trimethylazaniumyl)ethyl phosphate | Metabolite | Q47012764 (Wikidata) | Lysophosphatidylcholines |
[(2R)-3-[(E)-hexacos-5-enoyl]oxy-2-hydroxypropyl] 2-(trimethylazaniumyl)ethyl phosphate | Metabolite | Q47012759 (Wikidata) | Lysophosphatidylcholines |
glycine | Metabolite | Q620730 (Wikidata) | Amino acids & biogenic amines |
hydroxypropionyl-L-carnitine | Metabolite | Q46002547 (Wikidata) | Acylcarnitines |
levocarnitine | Metabolite | Q20735709 (Wikidata) | Acylcarnitines |
methionine S-oxide | Metabolite | Q6823656 (Wikidata) | Amino acids & biogenic amines |
oleoyl-lysophosphatidylcholine | Metabolite | Q27088173 (Wikidata) | Lysophosphatidylcholines |
phenethylamine | Metabolite | Q407411 (Wikidata) | Amino acids & biogenic amines |
symmetric dimethylarginine | Metabolite | Q27088766 (Wikidata) | Amino acids & biogenic amines |
trans-2-Dodecenoylcarnitine | Metabolite | Q27161908 (Wikidata) | Acylcarnitines |
trans-2-Tetradecenoylcarnitine | Metabolite | Q27161907 (Wikidata) | Acylcarnitines |
trans-4-hydroxyproline | Metabolite | Q27089020 (Wikidata) | Amino acids & biogenic amines |
Annotated Interactions
No annotated interactions