Trans-sulfuration, one-carbon metabolism and related pathways (Homo sapiens)

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Cystathionine1PHGDH3P-Glycerate3P-HydroxypyruvatePhosphoserineSerinePSAT1MethionineSAMeSAHHomocysteineMAT2BMAT1AMAT2ADNMT1DNMT3ADNMT3BDNMT3LPSPHAHCYAHCYL1AHCYL2CysteineGlutathioneGlycineTHFdUMP5,10-Methenyl-THF10-Formyl-THF5,10-Methylene-THFDihydrofolatedTMPSHMT1SHMT2AMTTYMSDHFRDHFRL1MTHFD1MTHFD2MTHFD2LMTHFD1LTHF5,10-Methylene-THF5-Methyl-THFMTHFD1LMTHFD1MTHFD2MTHFD2LMTRBHMTSerineGlycineSHMT1SHMT2AMTMTHFRCBSCTHGSSGCLCGCLMGSSPutrescineDecarboxylated SAMBetaineAcetylcholineDimethylglycineGlycineTaurineCysteine sulphinateCholineOrnithineHypotaurineSarcosineSpermineSpermidine


Description

The one carbon donor pathway (WP2190) has been added to this one (conversions are coloured green for clarity of the origin).

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Quality Tags

Ontology Terms

 

Bibliography

  1. Verkerke ARP, Shi X, Abe I, Gerszten RE, Kajimura S; ''Mitochondrial choline import regulates purine nucleotide pools via SLC25A48.''; bioRxiv, 2024 PubMed Europe PMC Scholia
  2. Ducker GS, Rabinowitz JD; ''One-Carbon Metabolism in Health and Disease.''; Cell Metab, 2017 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
135191view16:49, 7 August 2024EgonwMIM translocation across the mitochondrial membrane
135190view16:46, 7 August 2024EgonwSLC25A48 transports choline into the mitochondrion
135189view16:41, 7 August 2024EgonwCholine to betaine is a two-step reaction
123451view15:01, 27 July 2022DeSlAdded bile acid biosynthesis PW link.
123450view14:59, 27 July 2022DeSlUpdated title, removed last modified section
123449view14:58, 27 July 2022DeSlOntology Term : 'folate metabolic pathway' added !
123448view14:56, 27 July 2022DeSlOntology Term : 'folate mediated one-carbon metabolic pathway' added !
123447view14:55, 27 July 2022DeSlUpdate description
123446view14:54, 27 July 2022DeSlCompleted merger
123445view14:36, 27 July 2022DeSlMerging WP2525 with WP3940
116582view11:08, 8 May 2021EweitzModified title
106716view13:15, 17 September 2019MaintBotHMDB identifier normalization
105844view23:13, 15 August 2019KhanspersModified description
101747view05:25, 5 November 2018EgonwEquivalent CID (different protonation) but this CID is approved.
97822view15:27, 9 June 2018EgonwModified description
97786view14:10, 7 June 2018DeSlChanged arrows to catalysis MIM-type where applicable.
97785view14:05, 7 June 2018DeSlModified description
97782view14:00, 7 June 2018DeSlAdded info from One Carbon Donor PW (WP2190) in green.
97737view13:00, 7 June 2018Jessev1993Added literature reference.
97734view12:57, 7 June 2018Jessev1993Modified description
97730view12:51, 7 June 2018Jessev1993Modified description
87802view11:23, 25 July 2016MirellaKalafatiOntology Term : 'classic metabolic pathway' added !
80205view20:49, 22 May 2015KhanspersReverted to version '10:30, 7 January 2015' by Khanspers
80149view18:41, 14 May 2015KhanspersAdded mir29 family targeting and associated lit ref
78541view10:30, 7 January 2015MaintBotadded missing graphIds
72048view16:55, 24 October 2013Mkutmonupdated annotations
72039view13:49, 24 October 2013Mkutmonfixed unconnected lines
71253view20:51, 16 October 2013MaintBotAutomated update of data sources
69727view17:06, 10 July 2013Leonjohn2008Ver 1.3
69726view15:53, 10 July 2013Leonjohn2008Ver 1.2
69725view15:43, 10 July 2013Leonjohn2008Ver 1.2
69724view15:40, 10 July 2013Leonjohn2008Periodical save, work in progress
69723view15:30, 10 July 2013Leonjohn2008Periodical save, work in progress
69722view15:11, 10 July 2013Leonjohn2008Ver 1.1
69721view14:30, 10 July 2013Leonjohn2008Periodical save, work in progress
69720view14:19, 10 July 2013Leonjohn2008Periodical save, work in progress
69719view14:09, 10 July 2013Leonjohn2008Periodical save, work in progress
69718view13:45, 10 July 2013Leonjohn2008Periodical save, work in progress
69717view13:42, 10 July 2013Leonjohn2008Ver 1.1
69716view13:37, 10 July 2013Leonjohn2008V1.1
69715view13:31, 10 July 2013Leonjohn2008Ver1.1
69713view04:28, 10 July 2013Leonjohn2008Ver1.0
69712view03:57, 10 July 2013Leonjohn2008Periodical save, work in progress
69711view03:33, 10 July 2013Leonjohn2008New pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
10-Formyl-THFMetaboliteC00234 (KEGG Compound)
3P-GlycerateMetaboliteC00597 (KEGG Compound)
3P-HydroxypyruvateMetaboliteC03232 (KEGG Compound)
5,10-Methenyl-THFMetaboliteC00445 (KEGG Compound)
5,10-Methylene-THFMetaboliteC00143 (KEGG Compound)
5-Methyl-THFMetaboliteC00440 (KEGG Compound)
AHCYGeneProduct191 (Entrez Gene)
AHCYL1GeneProduct10768 (Entrez Gene)
AHCYL2GeneProduct23382 (Entrez Gene)
AMTGeneProduct275 (Entrez Gene)
AcetylcholineMetaboliteHMDB00895 (HMDB)
BHMTGeneProduct635 (Entrez Gene)
BetaineMetaboliteHMDB00043 (HMDB)
CBSGeneProduct875 (Entrez Gene)
CTHGeneProduct1491 (Entrez Gene)
CholineMetaboliteHMDB00097 (HMDB)
CystathionineMetaboliteC02291 (KEGG Compound)
Cysteine sulphinateMetabolite6409687 (PubChem-compound)
CysteineMetaboliteC00097 (KEGG Compound)
DHFRGeneProduct1719 (Entrez Gene)
DHFRL1GeneProduct200895 (Entrez Gene)
DNMT1GeneProduct1786 (Entrez Gene)
DNMT3AGeneProduct1788 (Entrez Gene)
DNMT3BGeneProduct1789 (Entrez Gene)
DNMT3LGeneProduct29947 (Entrez Gene)
Decarboxylated SAMMetabolite25203490 (PubChem-compound)
DihydrofolateMetaboliteC00415 (KEGG Compound)
DimethylglycineMetaboliteHMDB00092 (HMDB)
GCLCGeneProduct2729 (Entrez Gene)
GCLMGeneProduct2730 (Entrez Gene)
GSSGeneProduct2937 (Entrez Gene)
GlutathioneMetaboliteC00051 (KEGG Compound)
GlycineMetaboliteC00037 (KEGG Compound)
GlycineMetaboliteHMDB00123 (HMDB)
HomocysteineMetaboliteHMDB00742 (HMDB)
HypotaurineMetaboliteHMDB00965 (HMDB)
MAT1AGeneProduct4143 (Entrez Gene)
MAT2AGeneProduct4144 (Entrez Gene)
MAT2BGeneProduct27430 (Entrez Gene)
MTHFD1GeneProduct4522 (Entrez Gene)
MTHFD1LGeneProduct1719 (Entrez Gene)
MTHFD1LGeneProduct25902 (Entrez Gene)
MTHFD2GeneProduct10797 (Entrez Gene)
MTHFD2LGeneProduct441024 (Entrez Gene)
MTHFRGeneProduct4524 (Entrez Gene)
MTRGeneProduct4548 (Entrez Gene)
MethionineMetaboliteC00073 (KEGG Compound)
OrnithineMetaboliteHMDB00214 (HMDB)
PHGDHGeneProduct26227 (Entrez Gene)
PSAT1GeneProduct29968 (Entrez Gene)
PSPHGeneProduct5723 (Entrez Gene)
PhosphoserineMetaboliteC01005 (KEGG Compound)
PutrescineMetaboliteHMDB01414 (HMDB)
SAHMetaboliteC00021 (KEGG Compound)
SAMeMetaboliteC00019 (KEGG Compound)
SHMT1GeneProduct6470 (Entrez Gene)
SHMT2GeneProduct6472 (Entrez Gene)
SarcosineMetaboliteHMDB00271 (HMDB)
SerineMetaboliteC00065 (KEGG Compound)
SpermidineMetaboliteHMDB01257 (HMDB)
SpermineMetaboliteHMDB01256 (HMDB)
THFMetaboliteC00101 (KEGG Compound)
TYMSGeneProduct7298 (Entrez Gene)
TaurineMetaboliteHMDB00251 (HMDB)
dTMPMetaboliteC00364 (KEGG Compound)
dUMPMetaboliteC00365 (KEGG Compound)

Annotated Interactions

No annotated interactions

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