Threonine biosynthesis (Saccharomyces cerevisiae)

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1, 2L-AspartateH2ONADPL-Aspartyl-4-PL-Aspartate-semialdehydeH+O-phospho-L-homoserineNADPADPTHR4NADPHHOM3phosphateATPL-threonineNADPHTHR1HOM6ATPphosphatehomoserineHOM2ADP


Description

Proline is a non-essential amino acid belonging to the glutamate family of amino acids whose biosynthesis depends on the carbon skeleton of glutamic acid. Proline is synthesized from glutamate in the cytoplasm. The P5C reductase enzymatic reaction in this pathway is identical to the one in arginine degradation (CITS:[ 6997271]). Since these two pathways converge at this step, the requirement for proline in pro1 and pro2 mutant strains can be satisfied by arginine. However, these pro-strains cannot grow on rich media because the presence of optimal nitrogen sources causes the repression of genes necessary for arginine degradation (CITS:[2824433]), (CITS:[10640599]). Many of the genes involved in S. cerevisiae amino acid biosynthesis are coregulated by a process known as the general amino acid control system. In response to starvation for any single amino acid, the expression of many biosynthetic enzymes is upregulated (CITS:[3045517]). Mutational studies indicate that both PRO1 and PRO2 expression are regulated by general amino acid control, mediated by the transcriptional activator Gcn4p (CITS:[1350780]). However, expression profiling by microarray analysis shows that only PRO2 is activated by Gcn4p (CITS:[11390663]). In contrast, the expression of PRO3 appears to be constitutively expressed and under no form of regulation. SOURCE: SGD pathways, http://pathway.yeastgenome.org/server.html

Comments

GenMAPP remarks 
Based on http://pathway.yeastgenome.org/biocyc/

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Quality Tags

Ontology Terms

 

Bibliography

  1. Schultes NP, Ellington AD, Cherry JM, Szostak JW; ''Saccharomyces cerevisiae homoserine kinase is homologous to prokaryotic homoserine kinases.''; Gene, 1990 PubMed Europe PMC Scholia
  2. Ramos C, Calderón IL; ''Biochemical evidence that the Saccharomyces cerevisiae THR4 gene encodes threonine synthetase.''; FEBS Lett, 1994 PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
117349view11:54, 20 May 2021EweitzModified title
107019view13:47, 17 September 2019MaintBotHMDB identifier normalization
103636view20:46, 22 March 2019AlexanderPicoModified description
102461view05:47, 24 December 2018EgonwFixed a encoding issue.
102460view05:45, 24 December 2018EgonwReplaced secondary ChEBI IDs with primary IDs.
102445view13:47, 23 December 2018DeSlAnnotated metabolites which where previously text labels.
102444view13:42, 23 December 2018DeSlLayout
102443view13:41, 23 December 2018DeSlConnected side metabolites properly
102442view13:39, 23 December 2018DeSlConnected enzymes with MIMcatalysis
102441view13:37, 23 December 2018DeSlChanged main interactions from arrow to MIMconversion; connected lines to main metabolites
102440view13:36, 23 December 2018DeSlChanged labels to metabolite nodes
89663view05:45, 24 September 2016EgonwReplace the CAS number of the salt with that of just the metabolite.
70271view21:50, 15 July 2013MaintBotupdated to 2013 schema
69854view17:12, 11 July 2013EgonwMarked a few DataNodes with CAS registry numbers as metabolites.
67699view11:51, 26 June 2013DdiglesOntology Term : 'threonine biosynthetic pathway' added !
41857view04:51, 2 March 2011MaintBotRemoved redundant pathway information and comments
36659view22:50, 9 April 2010MaintBot
36619view22:32, 9 April 2010MaintBotDescription and bibliography added from SGD
21375view11:31, 14 November 2008MaintBot[[Pathway:Saccharomyces cerevisiae:Threonine Biosynthesis]] moved to [[Pathway:WP331]]: Moved to stable identifier
12869view08:06, 17 May 2008MaintBotautomated metabolite conversion
8957view14:13, 7 January 2008MaintBotAdded to category $category
8955view14:13, 7 January 2008M.BraymerUploaded new pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
ADPMetabolite58-64-0 (CAS)
ATPMetabolite1927-31-7 (CAS)
H+MetaboliteCHEBI:5584 (ChEBI)
H2OMetaboliteCHEBI:15377 (ChEBI)
HOM2ProteinS000002565 (SGD)
HOM3ProteinS000000854 (SGD)
HOM6ProteinS000003900 (SGD)
L-Aspartate-semialdehydeMetaboliteHMDB12249 (HMDB)
L-AspartateMetaboliteCHEBI:17053 (ChEBI)
L-Aspartyl-4-PMetaboliteCHEBI:15836 (ChEBI)
L-threonineMetabolite72-19-5 (CAS)
NADPHMetabolite53-57-6 (CAS)
NADPMetaboliteHMDB00217 (HMDB)
O-phospho-L-homoserineMetaboliteCHEBI:21965 (ChEBI)
THR1ProteinS000001067 (SGD)
THR4ProteinS000000649 (SGD)
homoserineMetabolite672-15-1 (CAS)
phosphateMetabolite14265-44-2 (CAS)

Annotated Interactions

No annotated interactions
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