Leukotriene metabolic pathway (Homo sapiens)

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3, 29156, 9, 17, 1824-26272724-261, 2, 7, 16, 19...5, 14, 284, 8, 10, 13, 20...2111, 121, 2, 7, 16ProteinLegendMetaboliteLTC4 synthasedeficiency2,4-dienoyl-CoA reductase (peroxisomal)Eicosanoid metabolism via cytochrome P450 monooxygenases pathwayArachidonate epoxygenase / epoxide hydrolase12-Oxo-LTB420-hydroxy-LTE4LTA4HLTA4(C2)-COOH-LTELTC4LTE420-carboxy-LTE420-hydroxy-LTB4GlutathioneArachidonic acid16-carboxy-LTB4N-acetyl-LTE4LTD4PTGR120-COOH-LTB418-carboxy-LTE4GGT5ABCC1CYP4F35-LOAP5-LO20-oxo-LTB4(C2)-COOH-LTB5-HPETELTC4S5-LOleukotriene-E4 20-monooxygenase18-COOH-LTB4DPEP116-carboxy-LTE4LTB4GGT1GlutathionuriaCysteinylglycinasedeficiency DPEP221LTC4DiseaseconversioncatalysisConnection to diseaseProtein2,4-dienoyl-CoA reductase (mitochondrial)


Description

Overview of the leukotrienes biosynthesis and metabolism. Leukotrienes are a group of biologically active lipid mediators who are derived pre-dominantly from arachidonic acid via the 5-lipoxygensea pathways. They pathways splits up into two parts, one include cysteinyl leukotrienes (LTC4, LTD4 and LTE4), and second contains LTB4.

The three disorders in the biosynthesis and metabolism of leukotrienes are caused by hereditary primary defects in enzyme and are indicated with a light red color. The clinical presentation of LTC4 synthase deficiency includes muscular hypotonia, psychomotor retardation, microcephaly and failure to thrive. The other two defects gamma-glutamyl transpeptidase deficiency and membrane-bound dipeptidase deficiency, have been less well studied.

This pathway was inspired by Chapter 41 of the book of Blau (ISBN 3642403360 (978-3642403361)).

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Bibliography

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  8. Mesa J, Alsina C, Oppermann U, Parés X, Farrés J, Porté S; ''Human prostaglandin reductase 1 (PGR1): Substrate specificity, inhibitor analysis and site-directed mutagenesis.''; Chem Biol Interact, 2015 PubMed Europe PMC Scholia
  9. Petrich K, Ludwig P, Kühn H, Schewe T; ''The suppression of 5-lipoxygenation of arachidonic acid in human polymorphonuclear leucocytes by the 15-lipoxygenase product (15S)-hydroxy-(5Z,8Z,11Z,13E)-eicosatetraenoic acid: structure-activity relationship and mechanism of action.''; Biochem J, 1996 PubMed Europe PMC Scholia
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  13. Gupta N, Gresser MJ, Ford-Hutchinson AW; ''Kinetic mechanism of glutathione conjugation to leukotriene A4 by leukotriene C4 synthase.''; Biochim Biophys Acta, 1998 PubMed Europe PMC Scholia
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History

View all...
CompareRevisionActionTimeUserComment
125324view22:15, 31 January 2023LarsgwFix references
122629view10:53, 22 April 2022FehrhartUpdated layout for pathways
122590view10:21, 20 April 2022EweitzModified title
122520view12:55, 13 April 2022DeSlUpdated chapter nr in description
122499view08:17, 13 April 2022DeSlOntology Term : 'brain ischemia' added !
122498view08:16, 13 April 2022DeSlOntology Term : 'cerebrovascular disease' added !
122497view08:13, 13 April 2022DeSlAdded more details to description
122496view07:55, 13 April 2022DeSlUpdated description of PW
122495view07:50, 13 April 2022DeSlUpdated info for DPEP1 disorder; added link to other relevant PW
122494view07:42, 13 April 2022DeSlOntology Term : 'gamma-glutamyl transpeptidase deficiency' added !
122257view13:36, 16 March 2022PeterSwanenbergadded references
122173view21:26, 14 March 2022PeterSwanenbergOntology Term : 'cerebral infarction' added !
122172view21:24, 14 March 2022PeterSwanenbergOntology Term : 'autosomal dominant nonsyndromic deafness' added !
122171view21:18, 14 March 2022PeterSwanenbergtried making the RHEA and reactome IDs functional

some small layout changes

added 2 new diseases
122098view22:39, 10 March 2022DeSlConnected unconnected line
122097view22:27, 10 March 2022DeSlAdded comments on 16-carboxy-LTB4
122096view22:08, 10 March 2022DeSlAdded some more IDs for metabolites
122090view16:34, 10 March 2022DeSlAdded LTE3 metabolite node (no ID found yet)
122089view16:23, 10 March 2022DeSlAdded additonal ref for not annotated metabolites bottom right corner, added two protein annotations
122000view08:34, 9 March 2022PeterSwanenbergOntology Term : 'glutathionuria disease pathway' added !
121999view08:33, 9 March 2022PeterSwanenbergOntology Term : 'leukotriene C4 synthase deficiency pathway' added !
121650view11:17, 23 February 2022PeterSwanenbergLayout changes
121647view11:07, 23 February 2022PeterSwanenbergLayout changes
121642view10:05, 23 February 2022PeterSwanenbergAdded literature and some layout changes
121635view16:24, 22 February 2022PeterSwanenbergChanged one identifier
121599view18:10, 21 February 2022AndraOntology Term : 'leukotriene metabolic pathway' added !
121544view10:13, 21 February 2022PeterSwanenbergModified description
121540view10:10, 21 February 2022PeterSwanenbergAdded Legend
121534view09:07, 21 February 2022PeterSwanenbergForgot an arrow
121533view09:06, 21 February 2022PeterSwanenbergChange layout and addes some Pahtway nodes
121374view19:30, 16 February 2022PeterSwanenbergAdded enzymes and changed the layout
121344view18:15, 15 February 2022PeterSwanenbergCorrected the Rhea pathways

added extra found enzymes

applied OMIM numbers to disease
121188view22:06, 10 February 2022PeterSwanenbergAdded rhea pathways
121129view14:06, 9 February 2022PeterSwanenberg
121120view10:13, 9 February 2022PeterSwanenberg
121119view10:00, 9 February 2022PeterSwanenbergNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
(C2)-COOH-LTBMetabolite
(C2)-COOH-LTEMetabolite
12-Oxo-LTB4MetaboliteCHEBI:27814 (ChEBI) Found in reactome reaction: arachidonic acid metabolism
16-carboxy-LTB4Metabolite
16-carboxy-LTE4Metabolite
18-COOH-LTB4MetaboliteCHEBI:63980 (ChEBI)
  • Found in reactome reaction: arachidonic acid metabolism
  • Full name: 18-hydroxy-18-oxo-dinorleukotriene B4
18-carboxy-LTE4MetaboliteCHEBI:74017 (ChEBI) aka 18-COOH-LTE4,PMID: 2174886. Structural depiction in PMID:2174886 is exact match with 18-carboxy-19,20-dinor-leukotriene E4 (CHEBI:74017)
2,4-dienoyl-CoA reductase (mitochondrial)ProteinQ16698 (Uniprot-TrEMBL) PMID: 2174886; localization info not provided
2,4-dienoyl-CoA reductase (peroxisomal)ProteinQ9NUI1 (Uniprot-TrEMBL) PMID: 2174886; localization info not provided
20-COOH-LTB4MetaboliteCHEBI:27562 (ChEBI)
  • CHEBI id lead to20-hydroxy-20-oxoleukotriene but according to Rhea is the same as 20-carboxy-LTB4
  • have both CHEBI: 27562 and 90722 who are very similair
20-carboxy-LTE4MetaboliteCHEBI:134517 (ChEBI) PMID: 2174886
20-hydroxy-LTB4MetaboliteCHEBI:15646 (ChEBI)
20-hydroxy-LTE4MetaboliteCHEBI:28700 (ChEBI)
20-oxo-LTB4MetaboliteCHEBI:63979 (ChEBI)
  • looks firs like a conversion from hydroxy to oxo (RHEA:48668) and then from oxo to carboxy (RHEA:48672)
  • found by RHE reactions described above
5-HPETEMetaboliteCHEBI:15632 (ChEBI) 5-HPETE: 5-Hydroperoxyeicosatetraenoic acid
5-LOAPGeneProductENSG00000132965 (Ensembl) 5-LOAP: 5-lipoxygenase-activating protein found as ALOX5AP
5-LOGeneProductENSG00000012779 (Ensembl)
  • 5-LO: 5-lipoxygenase
  • Found as gene ALOX5
ABCC1GeneProductENSG00000103222 (Ensembl) Found in reactome reaction: arachidonic acid metabolism
Arachidonate epoxygenase / epoxide hydrolasePathwayWP678 (WikiPathways)
Arachidonic acidMetaboliteCHEBI:15843 (ChEBI)
CYP4F3GeneProductENSG00000186529 (Ensembl) CYP4F3 or LTB4H
DPEP1GeneProductENSG00000015413 (Ensembl) DPEP1: membrane-bound dipeptidase
DPEP2GeneProductENSG00000167261 (Ensembl)
  • Full name: Dipeptidase 1
  • Found in RHEA reaction with uniprot
Eicosanoid metabolism via cytochrome P450 monooxygenases pathwayPathwayWP4720 (WikiPathways)
GGT1GeneProductENSG00000100031 (Ensembl) GGT1: Gamma-glutamyl transpeptidase
GGT5GeneProductENSG00000099998 (Ensembl)
  • GGT5 or GGTLA1
  • Founde by rhea reaction and than the uniprot search
GlutathioneMetaboliteCHEBI:16856 (ChEBI)
LTA4MetaboliteCHEBI:15651 (ChEBI)
LTA4HGeneProductENSG00000111144 (Ensembl)
LTB4MetaboliteCHEBI:15647 (ChEBI)
LTC4MetaboliteCHEBI:16978 (ChEBI)
LTC4SGeneProductENSG00000213316 (Ensembl) LTC4S: LTC4 synthase
LTD4MetaboliteCHEBI:28666 (ChEBI)
LTE4MetaboliteCHEBI:15650 (ChEBI) PMID: 2174886
N-acetyl-LTE4MetaboliteCHEBI:7210 (ChEBI) PMID: 2174886
PTGR1GeneProductENSG00000106853 (Ensembl) Found in reactome reaction: arachidonic acid metabolism
leukotriene-E4 20-monooxygenaseGeneProduct1.14.13.34 (Enzyme Nomenclature)
  • Found on Rhea in the cross-references section in MetaCyc that leukotriene-E4 20-monooxygenase is involved in this reaction

    https://biocyc.org/META/NEW-IMAGE?type=REACTION&object=LEUKOTRIENE-E4-20-MONOOXYGENASE-RXN

  • BRENDA site: https://www.brenda-enzymes.org/enzyme.php?ecno=1.14.13.34#SYSTEMATIC%20NAME
  • PMID: 2174886 N-acyetyl transferase

Annotated Interactions

View all...
SourceTargetTypeDatabase referenceComment
20-COOH-LTB418-COOH-LTB4mim-conversionId: R-HSA-2161790.2 (Reactome) found in reactome pathway: arachidonic acid metabolism
20-hydroxy-LTB420-oxo-LTB4mim-conversionRHEA:48669 (Rhea)
20-oxo-LTB420-COOH-LTB4mim-conversionRHEA:48673 (Rhea) looks firs like a conversion from hydroxy to oxo (RHEA:48668) and then from oxo to carboxy (RHEA:48672)
5-HPETELTA4mim-conversionRHEA:17962 (Rhea)
Arachidonic acid5-HPETEmim-conversionRHEA:17486 (Rhea)
LTA4LTB4mim-conversionRHEA:22325 (Rhea)
LTA4LTC4mim-conversionRHEA:17619 (Rhea)
LTB412-Oxo-LTB4mim-conversionRHEA:50609 (Rhea) Found in reactome reaction: arachidonic acid metabolism
LTB420-hydroxy-LTB4mim-conversionRHEA:22177 (Rhea)
LTC4LTC4ArrowId: R-HSA-266070.1 (Reactome) Transport activity of ABCC1
LTC4LTD4mim-conversionRHEA:31564 (Rhea)
LTD4LTE4mim-conversionRHEA:48616 (Rhea)
  • DPEP1 is in the undefined reaction direction in RHEA:48616, but not from left-to-right
  • Reactome Id does say conversion to LTE4 ID:R-HSA-266012.3
LTD4LTE4mim-conversionRHEA:48617 (Rhea)
LTE420-hydroxy-LTE4mim-conversionRHEA:24121 (Rhea) No human literature, only found in rats
Retrieved from "https://classic.wikipathways.org/index.php/Pathway:WP5171"
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