Assembly of collagen fibrils and other multimeric structures (Homo sapiens)

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30, 32295, 263523, 31282, 9, 342311, 1512, 2010, 2516, 1622, 3121165, 264, 24, 27187, 13, 33293, 1919817Collagen type I,IIXII,XIV fibrils Collagen type VII hexamer BPAG1ePlectin Tropocollagen type III Tropocollagen type VI dimer Collagen alpha-1Collagen alpha-1Integrin alpha6beta4 Collagen alpha-6Laminin-332 Collagen alpha-1Collagen type I fibrils with deH-HLNL cross-links Collagen type XV Collagen type VII -NC2 hexamer Collagen type VII -NC2 trimer Tropocollagen type VIII Lysyl oxidasesCu2+ Laminin-332 Integrin alpha6beta4 Network forming tropocollagens Fibril forming tropocollagens Collagen alpha-2Collagen type I fibrils with lysyl-pyrrole cross-links Tropocollagen type VI tetramer Collagen alpha-3Collagen type IItype IX fibril Collagen type I fibrils with hydroxylysyl-pyridinoline cross-links Collagen type 1 fibrils cross-linked by dehydro-lysinonorleucine crosslinks Collagen alpha-1Collagen type I fibrils with hydroxylysyl-pyrrole cross-links Collagen alpha-2Tropocollagen alpha-1Collagen type XII, XIV fibrils cytosolCollagen type XVII fibrilIntegrin alpha6beta4 Collagen type Xtype II fibrils Collagen type I fibrils with lysino-5-ketonorleucine cross-links Collagen type VII fibrilLaminin-332 Tropocollagen type II Collagen alpha-2Collagen type I fibrils with histidino-hydroxylysinoleucine cross-links Laminin-332 Collagen type VII fibrilLaminin-332 Tropocollagen alpha-1-3Collagen alpha-1Laminin-332 Collagen alpha-1Collagen alpha-1Tropocollagen type X Collagen alpha-5Type I hemidesmosome complex Collagen alpha-2Collagen alpha-4Collagen alpha-1BPAG1ePlectin Collagen type IV networks Collagen alpha-1Tropocollagen type IV Collagen alpha-2Collagen alpha-1Tropocollagen alpha-3Tropocollagen type XI Collagen alpha-1Collagen alpha-1Collagen alpha-1Tropocollagen type V Tropocollagen type VI Collagen type I, II fibrils Tropocollagen type XXIV Collagen alpha-3Collagen alpha-1Collagen type I fibrils with hydroxylysino-5-ketonorleucine crosslinks Tropocollagen alpha-5Tropocollagen alpha-1Collagen type XVII fibrilIntegrin alpha6beta4 Collagen type I fibrils with lysyl-pyridinoline cross-links Tropocollagen alpha-3Tropocollagen type I Collagen alpha-1Collagen alpha-1Collagen alpha-2Collagen type XI fibrilCollagen type II fibril Collagen type XVIII Anchoring fibril complex Tropocollagen type XXVII Collagen alpha-1Collagen alpha-1LAMA3 3x4Hyp-GalHyl-COL1A2 3x4Hyp-GalHyl-COL6A2 Collagen type I fibrils with hydroxylysyl-pyridinoline cross-links3x4Hyp-3Hyp-COL2A13x4Hyp-GlcGalHyl-COL6A1 ITGA63x4Hyp-GlcGalHyl-COL1A2 Collagen type VII NC2 proteinasesCollagen type I fibrils with lysyl-pyridinoline cross-linksGlcGalHyl-COL4A34-Hyp 5-Gal-Hyl-collagen alpha-13x4Hyp-GalHyl-COL2A13x4Hyp-3Hyp-5Hyl-COL6A2 3,4-Hyp 5-Gal-Hyl collagen alpha-3GlcGalHyl-COL2A1LAMA3 3x4Hyp-COL8A13x4Hyp-3Hyp-GlcGalHyl-COL1A1 3x4Hyp-COL15A13x4Hyp-3Hyp-COL4A4 5Hyl-COL4A6 5-Gal-Hyl collagen alpha-2COL2A13,4-hydroxyprolyl collagen alpha-3PLEC Collagen type XII, XIV fibrils3x4Hyp-3Hyp-GlcGalHyl-COL1A2 Collagen alpha-1ITGB4 3,4-hydroxyprolyl collagen alpha-1Glu-Gal-Hyl-collagen alpha-1GalHyl-COL4A33x4Hyp-3Hyp-GalHyl-COL24A13x4Hyp-3Hyp-GalHyl-COL4A4 LAMC2 3x4Hyp-COL4A33x4Hyp-5Hyl-COL4A33x4Hyp-GlcGalHyl-COL4A34-Hyp Glu-Gal-Hyl collagen alpha-2Glu-Gal-Hyl collagen alpha-1COL8A2 3,4-Hyp 5-Hyl collagen alpha-1GalHyl-COL1A1 Collagen fibres3x4Hyp-3Hyp-GlcGalHyl-COL4A1GlcGalHyl-COL24A1LAMA3 3x4Hyp-COL18A13x4Hyp-GlcGalHyl-COL27A1 COL18A15Hyl-COL4A4 COL7A13x4Hyp-3Hyp-GalHyl-COL7A1 Collagen type I, II fibrilsProlysyl oxidasesCollagen type IV networksGalHyl-COL3A1 GalHyl-COL24A1GalHyl-COL4A23x4Hyp-GlcGalHyl-COL4A13x4Hyp-3Hyp-COL15A1COL4A33x4Hyp-3Hyp-COL24A13x4Hyp-3Hyp-GalHyl-COL4A5 COL7A1 3x4Hyp-COL24A1Endostatin releasing proteases3x4Hyp-3Hyp-GalHyl-COL4A2Collagen type VII hexamerCollagen alpha-13x4Hyp-GlcGalHyl-COL4A2H2O25Hyl-COL4A13x4Hyp-GalHyl-COL7A13x4Hyp-5Hyl-COL8A2 LAMB3 3x4Hyp-COL6A1 3x4Hyp-3Hyp-GalHyl-COL4A13,4-Hyp 5-Gal-Hyl-collagen alpha-2Collagen alpha-33,4-Hyp Glu-Gal-Hyl collagen alpha-23x4Hyp-3Hyp-COL4A6 4-hydroxyprolyl collagen alpha-33x4Hyp-3Hyp-GlcGalHyl-COL4A5 Glu-Gal-Hyl collagen alpha-34-Hyp 5-Hyl collagen alpha-13x4Hyp-3Hyp-GalHyl-COL8A2 DST-3 3x4Hyp-3Hyp-GlcGalHyl-COL18A13x4Hyp-GlcGalHyl-COL2A15Hyl-COL3A1 3x4Hyp-3Hyp-COL18A13x4Hyp-GlcGalHyl-COL6A2 Collagen alpha-13x4Hyp-5Hyl-COL3A1 Lysyl oxidase propeptidesCOL15A14-hydroxyprolyl collagen alpha-13x4Hyp-3Hyp-COL4A14-Hyp 5-Gal-Hyl collagen alpha-23x4Hyp-3Hyp-5Hyl-COL7A1 GlcGalHyl-COL15A1GalHyl-COL6A1 5-hydroxylysyl-collagen alpha-13x4Hyp-3Hyp-COL7A1 5Hyl-COL24A1GlcGalHyl-COL4A23x4Hyp-3Hyp-5Hyl-COL8A2 GalHyl-COL18A1COL4A5 Collagen type XI fibrilCollagen type II fibril3x4Hyp-COL4A4 3x4Hyp-3Hyp-GalHyl-COL2A15Hyl-COL6A1 Cu2+ 3x4Hyp-COL3A1 3x4Hyp-5Hyl-COL4A5 3x4Hyp-3Hyp-5Hyl-COL15A1Laminin-332Anchoring fibril complex3x4Hyp-5Hyl-COL5A2GlcGalHyl-COL7A1 5Hyl-COL18A14-Hyp Glu-Gal-Hyl collagen alpha-2COL24A13x4Hyp-3Hyp-5Hyl-COL4A3GlcGalHyl-COL3A13x4Hyp-5Hyl-COL27A1 3x4Hyp-GalHyl-COL18A14-hydroxyprolyl collagen alpha-13x4Hyp-5Hyl-COL1A2 GlcGalHyl-COL4A6 3x4Hyp-COL4A6 5Hyl-COL8A2 COL4A24-Hyp 5-Hyl-collagen alpha-15Hyl-COL4A33x4Hyp-3Hyp-GalHyl-COL4A6 GlcGalHyl-COL7A1GalHyl-COL4A4 5-hydroxylysyl collagen alpha-33x4Hyp-3Hyp-5Hyl-COL4A5 3x4Hyp-GalHyl-COL10A1 GlcGalHyl-COL10A1 3x4Hyp-5Hyl-COL4A23x4Hyp-3Hyp-COL1A1 5Hyl-COL7A1 3x4Hyp-COL4A2Collagen type VII -NC2 hexamer3x4Hyp-3Hyp-5Hyl-COL4A4 3x4Hyp-GalHyl-COL4A4 Glu-Gal-Hyl collagen alpha-23x4Hyp-3Hyp-GlcGalHyl-COL8A2 GalHyl-COL27A1 3,4-Hyp Glu-Gal-Hyl collagen alpha-1H2OGlcGalHyl-COL1A2 3,4-hydroxyprolyl collagen alpha-2LAMB3 3x4Hyp-3Hyp-5Hyl-COL27A1 5-Gal-Hyl-collagen alpha-1Collagen type XI fibril3x4Hyp-3Hyp-5Hyl-COL1A1 GlcGalHyl-COL6A2 3x4Hyp-3Hyp-5Hyl-COL4A1Collagen type VII fibrilGlcGalHyl-COL6A1 3x4Hyp-5Hyl-COL6A1 3x4Hyp-3Hyp-5Hyl-COL10A1 3x4Hyp-5Hyl-COL6A2 Glu-Gal-Hyl collagen alpha-23x4Hyp-3Hyp-GlcGalHyl-COL6A2 Procollagen C-proteinases4-Hyp Glu-Gal-Hyl collagen alpha-1COL18A13x4Hyp-3Hyp-GlcGalHyl-COL27A1 3x4Hyp-3Hyp-5Hyl-COL3A1 3x4Hyp-3Hyp-GalHyl-COL7A1GalHyl-COL7A1 3x4Hyp-COL7A1 Lysyl oxidasesBPAG1ePlectin3x4Hyp-GlcGalHyl-COL8A2 3,4-Hyp 5-Gal-Hyl collagen alpha-2Collagen type I fibrils with lysyl-pyrrole cross-links3,4-Hyp 5-Gal-Hyl-collagen alpha-1GalHyl-COL6A2 5Hyl-COL8A13,4-Hyp Glu-Gal-Hyl-collagen alpha-25Hyl-COL27A1 3x4Hyp-GlcGalHyl-COL1A1 3x4Hyp-3Hyp-GalHyl-COL10A1 3x4Hyp-COL8A2 3x4Hyp-GalHyl-COL4A5 3x4Hyp-5Hyl-COL4A6 GlcGalHyl-COL27A1 3x4Hyp-COL4A5 3x4Hyp-3Hyp-5Hyl-COL1A2 3x4Hyp-GlcGalHyl-COL4A6 COL15A1Collagen fibrils3x4Hyp-GalHyl-COL8A13,4-Hyp 5-Hyl collagen alpha-33x4Hyp-5Hyl-COL7A1 4-hydroxyprolyl collagen alpha-23x4Hyp-COL7A1 LAMB3 GlcGalHyl-COL18A13x4Hyp-3Hyp-COL6A1 3x4Hyp-3Hyp-COL1A2 Collagen type II fibril3x4Hyp-3Hyp-GlcGalHyl-COL8A15Hyl-COL4A5 3x4Hyp-GalHyl-COL7A1 3x4Hyp-5Hyl-COL4A4 3x4Hyp-GlcGalHyl-COL7A13x4Hyp-3Hyp-5Hyl-COL8A13x4Hyp-GlcGalHyl-COL4A5 COL6A2 3x4Hyp-3Hyp-COL4A3GlcGalHyl-COL7A1 LAMC2 3x4Hyp-3Hyp-GalHyl-COL18A13x4Hyp-3Hyp-GlcGalHyl-COL4A4 3,4-Hyp Glu-Gal-Hyl-collagen alpha-13x4Hyp-3Hyp-GlcGalHyl-COL7A1 3x4Hyp-3Hyp-GalHyl-COL8A1DST-3 GlcGalHyl-COL8A2 5Hyl-COL10A1 5Hyl-COL6A2 3x4Hyp-3Hyp-GlcGalHyl-COL7A1 4-hydroxyprolyl collagen alpha-23x4Hyp-3Hyp-GlcGalHyl-COL4A23x4Hyp-5Hyl-COL7A13x4Hyp-GalHyl-COL27A1 Collagen type 1 fibrils cross-linked by dehydro-lysinonorleucine crosslinks5Hyl-COL4A2GalHyl-COL10A1 COL3A1 GalHyl-COL2A15Hyl-COL1A1 5-hydroxylysyl-collagen alpha-2Collagen type XVII fibrilIntegrin alpha6beta43x4Hyp-COL10A1 3x4Hyp-3Hyp-5Hyl-COL6A1 3x4Hyp-GlcGalHyl-COL7A1 LAMB3 3x4Hyp-COL1A1 3x4Hyp-5Hyl-COL4A13x4Hyp-GalHyl-COL24A1GlcGalHyl-COL4A4 3x4Hyp-3Hyp-5Hyl-COL24A1LAMA3 3x4Hyp-3Hyp-GalHyl-COL7A1 3x4Hyp-COL2A13x4Hyp-3Hyp-GalHyl-COL4A33x4Hyp-3Hyp-COL3A1 3x4Hyp-3Hyp-COL8A2 3x4Hyp-COL27A1 3x4Hyp-GalHyl-COL4A1Collagen type I fibrils with lysino-5-ketonorleucine cross-linksGalHyl-COL4A13,4-Hyp 5-Hyl-collagen alpha-2Collagen type I fibril with hydroxyallysines3x4Hyp-3Hyp-5Hyl-COL18A13x4Hyp-5Hyl-COL10A1 3x4Hyp-3Hyp-COL27A1 3x4Hyp-3Hyp-GlcGalHyl-COL10A1 4-Hyp 5-Hyl collagen alpha-2Lysyl oxidasesCu2+PLEC 3x4Hyp-3Hyp-5Hyl-COL7A1 Collagen type VII fibrilLaminin-3323x4Hyp-GlcGalHyl-COL10A1 O2COL1A1 3x4Hyp-3Hyp-GalHyl-COL6A2 5-hydroxylysyl collagen alpha-2CD151 Collagen type XV3x4Hyp-3Hyp-5Hyl-COL2A13x4Hyp-3Hyp-GalHyl-COL1A2 3x4Hyp-3Hyp-GlcGalHyl-COL4A6 Collagen type XVIII3x4Hyp-GalHyl-COL1A1 3x4Hyp-GalHyl-COL4A23x4Hyp-GalHyl-COL8A2 3x4Hyp-3Hyp-COL4A25Hyl-COL2A1GalHyl-COL15A15Hyl-COL7A13x4Hyp-3Hyp-COL7A1Network forming tropocollagens3x4Hyp-3Hyp-GalHyl-COL15A13x4Hyp-GalHyl-COL3A1 ITGB4 3x4Hyp-3Hyp-COL10A1 COL4A1COL10A1 3x4Hyp-COL6A2 3x4Hyp-3Hyp-GalHyl-COL1A1 5-Gal-Hyl collagen alpha-33x4Hyp-GalHyl-COL4A3Collagen type X network3,4-hydroxyprolyl-collagen alpha-13x4Hyp-5Hyl-COL24A13x4Hyp-GlcGalHyl-COL18A13x4Hyp-3Hyp-5Hyl-COL4A23x4Hyp-5Hyl-COL8A1Collagen alpha-1COL1A2 3x4Hyp-GlcGalHyl-COL15A1GalHyl-COL4A6 4-Hyp 5-Hyl collagen alpha-3COL27A1 Collagen type I fibril with allysines3x4Hyp-GalHyl-COL7A1 Type I hemidesmosome complexCOL6A1 4-Hyp Glu-Gal-Hyl collagen alpha-3GalHyl-COL8A2 5Hyl-COL15A13x4Hyp-5Hyl-COL15A1GalHyl-COL7A13x4Hyp-3Hyp-GalHyl-COL27A1 3x4Hyp-GlcGalHyl-COL8A13x4Hyp-GalHyl-COL15A1Collagen type I fibrils with hydroxylysyl-pyrrole cross-linksLAMC2 3x4Hyp-3Hyp-COL7A1 5-Gal-Hyl collagen alpha-2Collagen type I fibril with free hydroxylysinesCD1513x4Hyp-5Hyl-COL18A1GalHyl-COL8A13x4Hyp-GlcGalHyl-COL24A1COL7A1 3x4Hyp-3Hyp-5Hyl-COL4A6 3,4-hydroxyprolyl collagen alpha-23x4Hyp-3Hyp-GalHyl-COL3A1 Fibril forming tropocollagensGalHyl-COL1A2 Collagen type IItype IX fibril3x4Hyp-GlcGalHyl-COL3A1 3x4Hyp-GalHyl-COL6A1 4-Hyp Glu-Gal-Hyl-collagen alpha-13x4Hyp-3Hyp-GalHyl-COL6A1 3,4-Hyp Glu-Gal-Hyl collagen alpha-33x4Hyp-5Hyl-COL1A1 3x4Hyp-GalHyl-COL4A4 GlcGalHyl-COL4A5 3x4Hyp-3Hyp-COL8A1Collagen alpha-23x4Hyp-GalHyl-COL4A6 3x4Hyp-3Hyp-COL4A5 4-Hyp 5-Gal-Hyl collagen alpha-15Hyl-COL1A2 COL4A6 LAMC2 NH34-Hyp 5-Gal-Hyl collagen alpha-3GlcGalHyl-COL1A1 Collagen type I fibrils with histidino-hydroxylysinoleucine cross-links3x4Hyp-COL4A13x4Hyp-3Hyp-COL6A2 3x4Hyp-GlcGalHyl-COL7A1 Collagen type I,IIXII,XIV fibrils3x4Hyp-5Hyl-COL2A13x4Hyp-3Hyp-5Hyl-COL7A15Hyl-COL7A1 3x4Hyp-3Hyp-GlcGalHyl-COL15A13,4-Hyp 5-Gal-Hyl collagen alpha-1Collagen type Xtype II fibrilsCOL8A13x4Hyp-3Hyp-GlcGalHyl-COL6A1 Collagen alpha-23,4-Hyp 5-Hyl collagen alpha-23x4Hyp-3Hyp-GlcGalHyl-COL7A1COL18A1ITGA63x4Hyp-3Hyp-GlcGalHyl-COL3A1 Collagen networksCollagen type I fibrils with hydroxylysino-5-ketonorleucine crosslinksCOL4A4 3,4-Hyp 5-Hyl-collagen alpha-14-Hyp 5-Gal-Hyl collagen alpha-23x4Hyp-COL1A2 5-Gal-Hyl collagen alpha-1H2O3x4Hyp-3Hyp-GlcGalHyl-COL2A1Collagen type I fibril3x4Hyp-3Hyp-GlcGalHyl-COL4A3Collagen type I fibrils with deH-HLNL cross-linksGalHyl-COL4A5 GalHyl-COL7A1 3x4Hyp-3Hyp-GlcGalHyl-COL24A13x4Hyp-5Hyl-COL7A1 COL15A1GlcGalHyl-COL8A1GlcGalHyl-COL4A15-hydroxylysyl collagen alpha-13x4Hyp-COL7A114


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Collagen trimers in triple-helical form, referred to as procollagen or collagen molecules, are exported from the ER and trafficked through the Golgi network before secretion into the extracellular space. For fibrillar collagens namely types I, II, III, V, XI, XXIV and XXVII (Gordon & Hahn 2010, Ricard-Blum 2011) secretion is concomitant with processing of the N and C terminal collagen propeptides. These processed molecules are known as tropocollagens, considered to be the units of higher order collagen structures. They form within the extracellular space via a process that can proceed spontaneously, but in the cellular environment is regulated by many collagen binding proteins such as the FACIT (Fibril Associated Collagens with Interrupted Triple helices) family collagens and Small Leucine-Rich Proteoglycans (SLRPs). The architecture formed ultimately depends on the collagen subtype and the cellular conditions. Structures include the well-known fibrils and fibres formed by the major structural collagens type I and II plus several different types of supramolecular assembly (Bruckner 2010). The mechanical and physical properties of tissues depend on the spatial arrangement and composition of these collagen-containing structures (Kadler et al. 1996, Shoulders & Raines 2009, Birk & Bruckner 2011).

Fibrillar collagen structures are frequently heterotypic, composed of a major collagen type in association with smaller amounts of other types, e.g. type I collagen fibrils are associated with types III and V, while type II fibrils frequently contain types IX and XI (Wess 2005). Fibres composed exclusively of a single collagen type probably do not exist, as type I and II fibrils require collagens V and XI respectively as nucleators (Kadler et al. 2008, Wenstrup et al. 2011). Much of the structural understanding of collagen fibrils has been obtained with fibril-forming collagens, particularly type I, but some central features are believed to apply to at least the other fibrillar collagen subtypes (Wess 2005). Fibril diameter and length varies considerably, depending on the tissue and collagen types (Fang et al. 2012). The reasons for this are poorly understood (Wess 2005).

Some tissues such as skin have fibres that are approximately the same diameter while others such as tendon or cartilage have a bimodal distribution of thick and thin fibrils. Mature type I collagen fibrils in tendon are up to 1 cm in length, with a diameter of approx. 500 nm. An individual fibrillar collagen triple helix is less than 1.5 nm in diameter and around 300 nm long; collagen molecules must assemble to give rise to the higher-order fibril structure, a process known as fibrillogenesis, prevented by the presence of C-terminal propeptides (Kadler et al. 1987). In electron micrographs, fibrils have a banded appearance, due to regular gaps where fewer collagen molecules overlap, which occur because the fibrils are aligned in a quarter-stagger arrangement (Hodge & Petruska 1963). Collagen microfibrils are believed to have a quasi-hexagonal unit cell, with tropocollagen arranged to form supertwisted, right-handed microfibrils that interdigitate with neighbouring microfibrils, leading to a spiral-like structure for the mature collagen fibril (Orgel et al. 2006, Holmes & Kadler 2006).

Neighbouring tropocollagen monomers interact with each other and are cross-linked covalently by lysyl oxidase (Orgel et al. 2000, Mäki 2006). Mature collagen fibrils are stabilized by lysyl oxidase-mediated cross-links. Hydroxylysyl pyridinoline and lysyl pyridinoline cross-links form between (hydroxy) lysine and hydroxylysine residues in bone and cartilage (Eyre et al. 1984). Arginoline cross-links can form in cartilage (Eyre et al. 2010); mature bovine articular cartilage contains roughly equimolar amounts of arginoline and hydroxylysyl pyridinoline based on peptide yields. Mature collagen fibrils in skin are stabilized by the lysyl oxidase-mediated cross-link histidinohydroxylysinonorleucine (Yamauch et al. 1987). Due to the quarter-staggered arrangement of collagen molecules in a fibril, telopeptides most often interact with the triple helix of a neighbouring collagen molecule in the fibril, except for collagen molecules in register staggered by 4D from another collagen molecule. Fibril aggregation in vitro can be unipolar or bipolar, influenced by temperature and levels of C-proteinase, suggesting a role for the N- and C- propeptides in regulation of the aggregation process (Kadler et al. 1996). In vivo, collagen molecules at the fibril surface may retain their N-propeptides, suggesting that this may limit further accretion, or alternatively represents a transient stage in a model whereby fibrils grow in diameter through a cycle of deposition, cleavage and further deposition (Chapman 1989).

In vivo, fibrils are often composed from more than one type of collagen. Type III collagen is found associated with type I collagen in dermal fibrils, with the collagen III on the periphery, suggesting a regulatory role (Fleischmajer et al. 1990). Type V collagen associates with type I collagen fibrils, where it may limit fibril diameter (Birk et al. 1990, White et al. 1997). Type IX associates with the surface of narrow diameter collagen II fibrils in cartilage and the cornea (Wu et al. 1992, Eyre et al. 2004). Highly specific patterns of crosslinking sites suggest that collagen IX functions in interfibrillar networking (Wess 2005). Type XII and XIV collagens are localized near the surface of banded collagen I fibrils (Nishiyama et al. 1994). Certain fibril-associated collagens with interrupted triple helices (FACITs) associate with the surface of collagen fibrils, where they may serve to limit fibril fusion and thereby regulate fibril diameter (Gordon & Hahn 2010). Collagen XV, a member of the multiplexin family, is almost exclusively associated with the fibrillar collagen network, in very close proximity to the basement membrane. In human tissues collagen XV is seen linking banded collagen fibers subjacent to the basement membrane (Amenta et al. 2005). Type XIV collagen, SLRPs and discoidin domain receptors also regulate fibrillogenesis (Ansorge et al. 2009, Kalamajski et al. 2010, Flynn et al. 2010).

Collagen IX is cross-linked to the surface of collagen type II fibrils (Eyre et al. 1987). Type XII and XIV collagens are found in association with type I (Walchli et al. 1994) and type II (Watt et al. 1992, Eyre 2002) fibrils in cartilage. They are thought to associate non-covalently via their COL1/NC1 domains (Watt et al. 1992, Eyre 2002).

Some non-fibrillar collagens form supramolecular assemblies that are distinct from typical fibrils. Collagen VII forms anchoring fibrils, composed of antiparallel dimers that connect the dermis to the epidermis (Bruckner-Tuderman 2009). During fibrillogenesis, the nascent type VII procollagen molecules dimerize in an antiparallel manner. The C-propeptides are then removed by Bone morphogenetic protein 1 (Rattenholl et al. 2002) and the processed antiparallel dimers aggregate laterally. Collagens VIII and X form hexagonal networks and collagen VI forms beaded filament (Gordon & Hahn 2010, Ricard-Blum et al. 2011).

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  25. Orgel JP, San Antonio JD, Antipova O.; ''Molecular and structural mapping of collagen fibril interactions.''; PubMed Europe PMC Scholia
  26. Stone PJ, Bryan-Rhadfi J, Shaw HA, Franzblau C.; ''Isolation of hydroxylysyl pyridinoline, a mature collagen crosslink from neonatal rat aorta smooth muscle cell cultures.''; PubMed Europe PMC Scholia
  27. Robins SP, Bailey AJ.; ''The chemistry of the collagen cross-links. The mechanism of stabilization of the reducible intermediate cross-links.''; PubMed Europe PMC Scholia
  28. Lehto M, Sims TJ, Bailey AJ.; ''Skeletal muscle injury--molecular changes in the collagen during healing.''; PubMed Europe PMC Scholia
  29. Banse X, Sims TJ, Bailey AJ.; ''Mechanical properties of adult vertebral cancellous bone: correlation with collagen intermolecular cross-links.''; PubMed Europe PMC Scholia
  30. Uzel MI, Scott IC, Babakhanlou-Chase H, Palamakumbura AH, Pappano WN, Hong HH, Greenspan DS, Trackman PC.; ''Multiple bone morphogenetic protein 1-related mammalian metalloproteinases process pro-lysyl oxidase at the correct physiological site and control lysyl oxidase activation in mouse embryo fibroblast cultures.''; PubMed Europe PMC Scholia
  31. Siegel RC, Fu JC, Uto N, Horiuchi K, Fujimoto D.; ''Collagen cross-linking: lysyl oxidase dependent synthesis of pyridinoline in vitro: confirmation that pyridinoline is derived from collagen.''; PubMed Europe PMC Scholia
  32. Kuypers R, Tyler M, Kurth LB, Jenkins ID, Horgan DJ.; ''Identification of the loci of the collagen-associated Ehrlich chromogen in type I collagen confirms its role as a trivalent cross-link.''; PubMed Europe PMC Scholia
  33. Pinnell SR, Martin GR.; ''The cross-linking of collagen and elastin: enzymatic conversion of lysine in peptide linkage to alpha-aminoadipic-delta-semialdehyde (allysine) by an extract from bone.''; PubMed Europe PMC Scholia
  34. Kadler KE, Holmes DF, Trotter JA, Chapman JA.; ''Collagen fibril formation.''; PubMed Europe PMC Scholia
  35. Huber S, van der Rest M, Bruckner P, Rodriguez E, Winterhalter KH, Vaughan L.; ''Identification of the type IX collagen polypeptide chains. The alpha 2(IX) polypeptide carries the chondroitin sulfate chain(s).''; PubMed Europe PMC Scholia
  36. O'Reilly MS, Boehm T, Shing Y, Fukai N, Vasios G, Lane WS, Flynn E, Birkhead JR, Olsen BR, Folkman J.; ''Endostatin: an endogenous inhibitor of angiogenesis and tumor growth.''; PubMed Europe PMC Scholia
  37. Nakashima Y, Kariya Y, Yasuda C, Miyazaki K.; ''Regulation of cell adhesion and type VII collagen binding by the beta3 chain short arm of laminin-5: effect of its proteolytic cleavage.''; PubMed Europe PMC Scholia
  38. Schmid TM, Linsenmayer TF.; ''Immunoelectron microscopy of type X collagen: supramolecular forms within embryonic chick cartilage.''; PubMed Europe PMC Scholia
  39. Vanacore R, Ham AJ, Voehler M, Sanders CR, Conrads TP, Veenstra TD, Sharpless KB, Dawson PE, Hudson BG.; ''A sulfilimine bond identified in collagen IV.''; PubMed Europe PMC Scholia

History

View all...
CompareRevisionActionTimeUserComment
118517view09:58, 28 May 2021EweitzOntology Term : 'peptide and protein metabolic pathway' added !
114642view16:10, 25 January 2021ReactomeTeamReactome version 75
113090view11:15, 2 November 2020ReactomeTeamReactome version 74
112324view15:24, 9 October 2020ReactomeTeamReactome version 73
101223view11:11, 1 November 2018ReactomeTeamreactome version 66
100761view20:37, 31 October 2018ReactomeTeamreactome version 65
100305view19:14, 31 October 2018ReactomeTeamreactome version 64
99852view15:58, 31 October 2018ReactomeTeamreactome version 63
99409view14:34, 31 October 2018ReactomeTeamreactome version 62 (2nd attempt)
93410view11:22, 9 August 2017ReactomeTeamreactome version 61
86500view09:19, 11 July 2016ReactomeTeamreactome version 56
83231view10:26, 18 November 2015ReactomeTeamVersion54
81628view13:10, 21 August 2015ReactomeTeamVersion53
77089view08:38, 17 July 2014ReactomeTeamFixed remaining interactions
76795view12:17, 16 July 2014ReactomeTeamFixed remaining interactions
76118view10:18, 11 June 2014ReactomeTeamRe-fixing comment source
75830view11:39, 10 June 2014ReactomeTeamReactome 48 Update
75191view09:40, 9 May 2014Anwesha
74835view10:06, 30 April 2014ReactomeTeamNew pathway

External references

DataNodes

View all...
NameTypeDatabase referenceComment
3,4-Hyp 5-Gal-Hyl collagen alpha-1ProteinP20908 (Uniprot-TrEMBL)
3,4-Hyp 5-Gal-Hyl collagen alpha-2ProteinP05997 (Uniprot-TrEMBL)
3,4-Hyp 5-Gal-Hyl collagen alpha-3ProteinP25940 (Uniprot-TrEMBL)
3,4-Hyp 5-Gal-Hyl-collagen alpha-1ProteinP12107 (Uniprot-TrEMBL)
3,4-Hyp 5-Gal-Hyl-collagen alpha-2ProteinP13942 (Uniprot-TrEMBL)
3,4-Hyp 5-Hyl collagen alpha-1ProteinP20908 (Uniprot-TrEMBL)
3,4-Hyp 5-Hyl collagen alpha-2ProteinP05997 (Uniprot-TrEMBL)
3,4-Hyp 5-Hyl collagen alpha-3ProteinP25940 (Uniprot-TrEMBL)
3,4-Hyp 5-Hyl-collagen alpha-1ProteinP12107 (Uniprot-TrEMBL)
3,4-Hyp 5-Hyl-collagen alpha-2ProteinP13942 (Uniprot-TrEMBL)
3,4-Hyp Glu-Gal-Hyl collagen alpha-1ProteinP20908 (Uniprot-TrEMBL)
3,4-Hyp Glu-Gal-Hyl collagen alpha-2ProteinP05997 (Uniprot-TrEMBL)
3,4-Hyp Glu-Gal-Hyl collagen alpha-3ProteinP25940 (Uniprot-TrEMBL)
3,4-Hyp Glu-Gal-Hyl-collagen alpha-1ProteinP12107 (Uniprot-TrEMBL)
3,4-Hyp Glu-Gal-Hyl-collagen alpha-2ProteinP13942 (Uniprot-TrEMBL)
3,4-hydroxyprolyl collagen alpha-1ProteinP20908 (Uniprot-TrEMBL)
3,4-hydroxyprolyl collagen alpha-2ProteinP05997 (Uniprot-TrEMBL)
3,4-hydroxyprolyl collagen alpha-2ProteinP13942 (Uniprot-TrEMBL)
3,4-hydroxyprolyl collagen alpha-3ProteinP25940 (Uniprot-TrEMBL)
3,4-hydroxyprolyl-collagen alpha-1ProteinP12107 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL15A1ProteinP39059 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL18A1ProteinP39060 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL24A1ProteinQ17RW2 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL2A1ProteinP02458 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL3A1 ProteinP02461 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL4A1ProteinP02462 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL4A2ProteinP08572 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL4A3ProteinQ01955 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL4A4 ProteinP53420 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL4A5 ProteinP29400 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL4A6 ProteinQ14031 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL7A1ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL8A1ProteinP27658 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-5Hyl-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL15A1ProteinP39059 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL18A1ProteinP39060 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL24A1ProteinQ17RW2 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL2A1ProteinP02458 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL3A1 ProteinP02461 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL4A1ProteinP02462 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL4A2ProteinP08572 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL4A3ProteinQ01955 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL4A4 ProteinP53420 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL4A5 ProteinP29400 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL4A6 ProteinQ14031 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL7A1ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL8A1ProteinP27658 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL15A1ProteinP39059 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL18A1ProteinP39060 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL24A1ProteinQ17RW2 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL2A1ProteinP02458 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL3A1 ProteinP02461 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL4A1ProteinP02462 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL4A2ProteinP08572 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL4A3ProteinQ01955 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL4A4 ProteinP53420 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL4A5 ProteinP29400 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL4A6 ProteinQ14031 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL7A1ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL8A1ProteinP27658 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GalHyl-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL15A1ProteinP39059 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL18A1ProteinP39060 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL24A1ProteinQ17RW2 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL2A1ProteinP02458 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL3A1 ProteinP02461 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL4A1ProteinP02462 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL4A2ProteinP08572 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL4A3ProteinQ01955 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL4A4 ProteinP53420 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL4A5 ProteinP29400 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL4A6 ProteinQ14031 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL7A1ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL8A1ProteinP27658 (Uniprot-TrEMBL)
3x4Hyp-3Hyp-GlcGalHyl-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL15A1ProteinP39059 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL18A1ProteinP39060 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL24A1ProteinQ17RW2 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL2A1ProteinP02458 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL3A1 ProteinP02461 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL4A1ProteinP02462 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL4A2ProteinP08572 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL4A3ProteinQ01955 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL4A4 ProteinP53420 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL4A5 ProteinP29400 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL4A6 ProteinQ14031 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL5A2ProteinP05997 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL7A1ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL8A1ProteinP27658 (Uniprot-TrEMBL)
3x4Hyp-5Hyl-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
3x4Hyp-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
3x4Hyp-COL15A1ProteinP39059 (Uniprot-TrEMBL)
3x4Hyp-COL18A1ProteinP39060 (Uniprot-TrEMBL)
3x4Hyp-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
3x4Hyp-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
3x4Hyp-COL24A1ProteinQ17RW2 (Uniprot-TrEMBL)
3x4Hyp-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
3x4Hyp-COL2A1ProteinP02458 (Uniprot-TrEMBL)
3x4Hyp-COL3A1 ProteinP02461 (Uniprot-TrEMBL)
3x4Hyp-COL4A1ProteinP02462 (Uniprot-TrEMBL)
3x4Hyp-COL4A2ProteinP08572 (Uniprot-TrEMBL)
3x4Hyp-COL4A3ProteinQ01955 (Uniprot-TrEMBL)
3x4Hyp-COL4A4 ProteinP53420 (Uniprot-TrEMBL)
3x4Hyp-COL4A5 ProteinP29400 (Uniprot-TrEMBL)
3x4Hyp-COL4A6 ProteinQ14031 (Uniprot-TrEMBL)
3x4Hyp-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
3x4Hyp-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
3x4Hyp-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-COL7A1ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-COL8A1ProteinP27658 (Uniprot-TrEMBL)
3x4Hyp-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL15A1ProteinP39059 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL18A1ProteinP39060 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL24A1ProteinQ17RW2 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL2A1ProteinP02458 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL3A1 ProteinP02461 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL4A1ProteinP02462 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL4A2ProteinP08572 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL4A3ProteinQ01955 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL4A4 ProteinP53420 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL4A5 ProteinP29400 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL4A6 ProteinQ14031 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL7A1ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL8A1ProteinP27658 (Uniprot-TrEMBL)
3x4Hyp-GalHyl-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL15A1ProteinP39059 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL18A1ProteinP39060 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL24A1ProteinQ17RW2 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL2A1ProteinP02458 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL3A1 ProteinP02461 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL4A1ProteinP02462 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL4A2ProteinP08572 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL4A3ProteinQ01955 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL4A5 ProteinP29400 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL4A6 ProteinQ14031 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL7A1ProteinQ02388 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL8A1ProteinP27658 (Uniprot-TrEMBL)
3x4Hyp-GlcGalHyl-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
4-Hyp 5-Gal-Hyl collagen alpha-1ProteinP20908 (Uniprot-TrEMBL)
4-Hyp 5-Gal-Hyl collagen alpha-2ProteinP05997 (Uniprot-TrEMBL)
4-Hyp 5-Gal-Hyl collagen alpha-2ProteinP13942 (Uniprot-TrEMBL)
4-Hyp 5-Gal-Hyl collagen alpha-3ProteinP25940 (Uniprot-TrEMBL)
4-Hyp 5-Gal-Hyl-collagen alpha-1ProteinP12107 (Uniprot-TrEMBL)
4-Hyp 5-Hyl collagen alpha-1ProteinP20908 (Uniprot-TrEMBL)
4-Hyp 5-Hyl collagen alpha-2ProteinP13942 (Uniprot-TrEMBL)
4-Hyp 5-Hyl collagen alpha-3ProteinP25940 (Uniprot-TrEMBL)
4-Hyp 5-Hyl-collagen alpha-1ProteinP12107 (Uniprot-TrEMBL)
4-Hyp Glu-Gal-Hyl collagen alpha-1ProteinP20908 (Uniprot-TrEMBL)
4-Hyp Glu-Gal-Hyl collagen alpha-2ProteinP05997 (Uniprot-TrEMBL)
4-Hyp Glu-Gal-Hyl collagen alpha-2ProteinP13942 (Uniprot-TrEMBL)
4-Hyp Glu-Gal-Hyl collagen alpha-3ProteinP25940 (Uniprot-TrEMBL)
4-Hyp Glu-Gal-Hyl-collagen alpha-1ProteinP12107 (Uniprot-TrEMBL)
4-hydroxyprolyl collagen alpha-1ProteinP12107 (Uniprot-TrEMBL)
4-hydroxyprolyl collagen alpha-1ProteinP20908 (Uniprot-TrEMBL)
4-hydroxyprolyl collagen alpha-2ProteinP05997 (Uniprot-TrEMBL)
4-hydroxyprolyl collagen alpha-2ProteinP13942 (Uniprot-TrEMBL)
4-hydroxyprolyl collagen alpha-3ProteinP25940 (Uniprot-TrEMBL)
5-Gal-Hyl collagen alpha-1ProteinP20908 (Uniprot-TrEMBL)
5-Gal-Hyl collagen alpha-2ProteinP05997 (Uniprot-TrEMBL)
5-Gal-Hyl collagen alpha-2ProteinP13942 (Uniprot-TrEMBL)
5-Gal-Hyl collagen alpha-3ProteinP25940 (Uniprot-TrEMBL)
5-Gal-Hyl-collagen alpha-1ProteinP12107 (Uniprot-TrEMBL)
5-hydroxylysyl collagen alpha-1ProteinP20908 (Uniprot-TrEMBL)
5-hydroxylysyl collagen alpha-2ProteinP05997 (Uniprot-TrEMBL)
5-hydroxylysyl collagen alpha-3ProteinP25940 (Uniprot-TrEMBL)
5-hydroxylysyl-collagen alpha-1ProteinP12107 (Uniprot-TrEMBL)
5-hydroxylysyl-collagen alpha-2ProteinP13942 (Uniprot-TrEMBL)
5Hyl-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
5Hyl-COL15A1ProteinP39059 (Uniprot-TrEMBL)
5Hyl-COL18A1ProteinP39060 (Uniprot-TrEMBL)
5Hyl-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
5Hyl-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
5Hyl-COL24A1ProteinQ17RW2 (Uniprot-TrEMBL)
5Hyl-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
5Hyl-COL2A1ProteinP02458 (Uniprot-TrEMBL)
5Hyl-COL3A1 ProteinP02461 (Uniprot-TrEMBL)
5Hyl-COL4A1ProteinP02462 (Uniprot-TrEMBL)
5Hyl-COL4A2ProteinP08572 (Uniprot-TrEMBL)
5Hyl-COL4A3ProteinQ01955 (Uniprot-TrEMBL)
5Hyl-COL4A4 ProteinP53420 (Uniprot-TrEMBL)
5Hyl-COL4A5 ProteinP29400 (Uniprot-TrEMBL)
5Hyl-COL4A6 ProteinQ14031 (Uniprot-TrEMBL)
5Hyl-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
5Hyl-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
5Hyl-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
5Hyl-COL7A1ProteinQ02388 (Uniprot-TrEMBL)
5Hyl-COL8A1ProteinP27658 (Uniprot-TrEMBL)
5Hyl-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
Anchoring fibril complexComplexREACT_151867 (Reactome)
BPAG1e PlectinComplexREACT_152489 (Reactome)
CD151 ProteinP48509 (Uniprot-TrEMBL)
CD151ProteinP48509 (Uniprot-TrEMBL)
COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
COL15A1ProteinP39059 (Uniprot-TrEMBL)
COL18A1ProteinP39060 (Uniprot-TrEMBL)
COL1A1 ProteinP02452 (Uniprot-TrEMBL)
COL1A2 ProteinP08123 (Uniprot-TrEMBL)
COL24A1ProteinQ17RW2 (Uniprot-TrEMBL)
COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
COL2A1ProteinP02458 (Uniprot-TrEMBL)
COL3A1 ProteinP02461 (Uniprot-TrEMBL)
COL4A1ProteinP02462 (Uniprot-TrEMBL)
COL4A2ProteinP08572 (Uniprot-TrEMBL)
COL4A3ProteinQ01955 (Uniprot-TrEMBL)
COL4A4 ProteinP53420 (Uniprot-TrEMBL)
COL4A5 ProteinP29400 (Uniprot-TrEMBL)
COL4A6 ProteinQ14031 (Uniprot-TrEMBL)
COL6A1 ProteinP12109 (Uniprot-TrEMBL)
COL6A2 ProteinP12110 (Uniprot-TrEMBL)
COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
COL7A1ProteinQ02388 (Uniprot-TrEMBL)
COL8A1ProteinP27658 (Uniprot-TrEMBL)
COL8A2 ProteinP25067 (Uniprot-TrEMBL)
Collagen alpha-1ProteinP12107 (Uniprot-TrEMBL)
Collagen alpha-1ProteinP20908 (Uniprot-TrEMBL)
Collagen alpha-1ComplexREACT_125037 (Reactome)
Collagen alpha-1ProteinREACT_165032 (Reactome)
Collagen alpha-2ProteinP05997 (Uniprot-TrEMBL)
Collagen alpha-2ProteinP13942 (Uniprot-TrEMBL)
Collagen alpha-3ProteinP25940 (Uniprot-TrEMBL)
Collagen fibresREACT_151881 (Reactome)
Collagen fibrilsREACT_150722 (Reactome)
Collagen networksREACT_151923 (Reactome)
Collagen type 1 fibrils cross-linked by dehydro-lysinonorleucine crosslinksComplexREACT_151642 (Reactome)
Collagen type I fibril with allysinesREACT_151048 (Reactome)
Collagen type I fibril with free hydroxylysinesREACT_150919 (Reactome)
Collagen type I fibril with hydroxyallysinesREACT_152418 (Reactome)
Collagen type I fibrilREACT_150867 (Reactome)
Collagen type I fibrils with deH-HLNL cross-linksComplexREACT_151003 (Reactome)
Collagen type I fibrils with histidino-hydroxylysinoleucine cross-linksComplexREACT_151494 (Reactome)
Collagen type I fibrils with hydroxylysino-5-ketonorleucine crosslinksComplexREACT_152262 (Reactome)
Collagen type I fibrils with hydroxylysyl-pyridinoline cross-linksComplexREACT_151870 (Reactome)
Collagen type I fibrils with hydroxylysyl-pyrrole cross-linksComplexREACT_151793 (Reactome)
Collagen type I fibrils with lysino-5-ketonorleucine cross-linksComplexREACT_152495 (Reactome)
Collagen type I fibrils with lysyl-pyridinoline cross-linksComplexREACT_152486 (Reactome)
Collagen type I fibrils with lysyl-pyrrole cross-linksComplexREACT_151712 (Reactome)
Collagen type I, II fibrilsREACT_150821 (Reactome)
Collagen type I,II XII,XIV fibrilsComplexREACT_151645 (Reactome)
Collagen type II type IX fibrilComplexREACT_151242 (Reactome)
Collagen type II fibrilREACT_152451 (Reactome)
Collagen type IV networksREACT_151427 (Reactome)
Collagen type VII -NC2 hexamerComplexREACT_150771 (Reactome)
Collagen type VII NC2 proteinasesREACT_151983 (Reactome)
Collagen type VII fibril Laminin-332ComplexREACT_151770 (Reactome)
Collagen type VII fibrilREACT_151190 (Reactome)
Collagen type VII hexamerComplexREACT_151144 (Reactome)
Collagen type X type II fibrilsComplexREACT_151731 (Reactome)
Collagen type X networkREACT_150710 (Reactome)
Collagen type XI fibril Collagen type II fibrilComplexREACT_150897 (Reactome)
Collagen type XI fibrilREACT_152212 (Reactome)
Collagen type XII, XIV fibrilsREACT_150658 (Reactome)
Collagen type XVII fibril Integrin alpha6beta4ComplexREACT_151728 (Reactome)
Collagen type XVIIIComplexREACT_123391 (Reactome)
Collagen type XVComplexREACT_123202 (Reactome)
Cu2+ MetaboliteCHEBI:29036 (ChEBI)
DST-3 ProteinQ03001-3 (Uniprot-TrEMBL)
Endostatin releasing proteasesProteinREACT_150741 (Reactome)
Fibril forming tropocollagensComplexREACT_151583 (Reactome)
GalHyl-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
GalHyl-COL15A1ProteinP39059 (Uniprot-TrEMBL)
GalHyl-COL18A1ProteinP39060 (Uniprot-TrEMBL)
GalHyl-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
GalHyl-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
GalHyl-COL24A1ProteinQ17RW2 (Uniprot-TrEMBL)
GalHyl-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
GalHyl-COL2A1ProteinP02458 (Uniprot-TrEMBL)
GalHyl-COL3A1 ProteinP02461 (Uniprot-TrEMBL)
GalHyl-COL4A1ProteinP02462 (Uniprot-TrEMBL)
GalHyl-COL4A2ProteinP08572 (Uniprot-TrEMBL)
GalHyl-COL4A3ProteinQ01955 (Uniprot-TrEMBL)
GalHyl-COL4A4 ProteinP53420 (Uniprot-TrEMBL)
GalHyl-COL4A5 ProteinP29400 (Uniprot-TrEMBL)
GalHyl-COL4A6 ProteinQ14031 (Uniprot-TrEMBL)
GalHyl-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
GalHyl-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
GalHyl-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
GalHyl-COL7A1ProteinQ02388 (Uniprot-TrEMBL)
GalHyl-COL8A1ProteinP27658 (Uniprot-TrEMBL)
GalHyl-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
GlcGalHyl-COL10A1 ProteinQ03692 (Uniprot-TrEMBL)
GlcGalHyl-COL15A1ProteinP39059 (Uniprot-TrEMBL)
GlcGalHyl-COL18A1ProteinP39060 (Uniprot-TrEMBL)
GlcGalHyl-COL1A1 ProteinP02452 (Uniprot-TrEMBL)
GlcGalHyl-COL1A2 ProteinP08123 (Uniprot-TrEMBL)
GlcGalHyl-COL24A1ProteinQ17RW2 (Uniprot-TrEMBL)
GlcGalHyl-COL27A1 ProteinQ8IZC6 (Uniprot-TrEMBL)
GlcGalHyl-COL2A1ProteinP02458 (Uniprot-TrEMBL)
GlcGalHyl-COL3A1ProteinP02461 (Uniprot-TrEMBL)
GlcGalHyl-COL4A1ProteinP02462 (Uniprot-TrEMBL)
GlcGalHyl-COL4A2ProteinP08572 (Uniprot-TrEMBL)
GlcGalHyl-COL4A3ProteinQ01955 (Uniprot-TrEMBL)
GlcGalHyl-COL4A4 ProteinP53420 (Uniprot-TrEMBL)
GlcGalHyl-COL4A5 ProteinP29400 (Uniprot-TrEMBL)
GlcGalHyl-COL4A6 ProteinQ14031 (Uniprot-TrEMBL)
GlcGalHyl-COL6A1 ProteinP12109 (Uniprot-TrEMBL)
GlcGalHyl-COL6A2 ProteinP12110 (Uniprot-TrEMBL)
GlcGalHyl-COL7A1 ProteinQ02388 (Uniprot-TrEMBL)
GlcGalHyl-COL7A1ProteinQ02388 (Uniprot-TrEMBL)
GlcGalHyl-COL8A1ProteinP27658 (Uniprot-TrEMBL)
GlcGalHyl-COL8A2 ProteinP25067 (Uniprot-TrEMBL)
Glu-Gal-Hyl collagen alpha-1ProteinP20908 (Uniprot-TrEMBL)
Glu-Gal-Hyl collagen alpha-2ProteinP05997 (Uniprot-TrEMBL)
Glu-Gal-Hyl collagen alpha-2ProteinP13942 (Uniprot-TrEMBL)
Glu-Gal-Hyl collagen alpha-3ProteinP25940 (Uniprot-TrEMBL)
Glu-Gal-Hyl-collagen alpha-1ProteinP12107 (Uniprot-TrEMBL)
H2O2MetaboliteCHEBI:16240 (ChEBI)
H2OMetaboliteCHEBI:15377 (ChEBI)
ITGA6ProteinP23229 (Uniprot-TrEMBL)
ITGB4 ProteinP16144 (Uniprot-TrEMBL)
LAMA3 ProteinQ16787 (Uniprot-TrEMBL)
LAMB3 ProteinQ13751 (Uniprot-TrEMBL)
LAMC2 ProteinQ13753 (Uniprot-TrEMBL)
Laminin-332ComplexREACT_14602 (Reactome)
Lysyl oxidase propeptidesProteinREACT_151701 (Reactome)
Lysyl oxidases Cu2+ComplexREACT_151397 (Reactome)
Lysyl oxidasesProteinREACT_150669 (Reactome)
NH3MetaboliteCHEBI:16134 (ChEBI)
Network forming tropocollagensComplexREACT_150924 (Reactome)
O2MetaboliteCHEBI:15379 (ChEBI)
PLEC ProteinQ15149 (Uniprot-TrEMBL)
Procollagen C-proteinasesProteinREACT_122145 (Reactome)
Prolysyl oxidasesProteinREACT_150550 (Reactome)
Type I hemidesmosome complexComplexREACT_152127 (Reactome)

Annotated Interactions

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SourceTargetTypeDatabase referenceComment
BPAG1e PlectinREACT_150217 (Reactome)
CD151REACT_150217 (Reactome)
COL15A1ArrowREACT_150219 (Reactome)
COL18A1ArrowREACT_150219 (Reactome)
Collagen alpha-1ArrowREACT_150316 (Reactome)
Collagen type I fibril with allysinesArrowREACT_150131 (Reactome)
Collagen type I fibril with allysinesREACT_150325 (Reactome)
Collagen type I fibril with allysinesREACT_150460 (Reactome)
Collagen type I fibril with free hydroxylysinesREACT_150172 (Reactome)
Collagen type I fibril with hydroxyallysinesArrowREACT_150172 (Reactome)
Collagen type I fibril with hydroxyallysinesREACT_150322 (Reactome)
Collagen type I fibril with hydroxyallysinesREACT_150373 (Reactome)
Collagen type I fibrilREACT_150131 (Reactome)
Collagen type I fibrilREACT_150172 (Reactome)
Collagen type I fibrilREACT_150322 (Reactome)
Collagen type I fibrilREACT_150325 (Reactome)
Collagen type I fibrilREACT_150362 (Reactome)
Collagen type I fibrilREACT_150373 (Reactome)
Collagen type I fibrilREACT_150460 (Reactome)
Collagen type I fibrilREACT_150470 (Reactome)
Collagen type I fibrils with deH-HLNL cross-linksREACT_150362 (Reactome)
Collagen type I fibrils with deH-HLNL cross-linksREACT_150389 (Reactome)
Collagen type I fibrils with deH-HLNL cross-linksREACT_150410 (Reactome)
Collagen type I fibrils with hydroxylysino-5-ketonorleucine crosslinksREACT_150249 (Reactome)
Collagen type I fibrils with hydroxylysino-5-ketonorleucine crosslinksREACT_150389 (Reactome)
Collagen type I fibrils with lysino-5-ketonorleucine cross-linksREACT_150249 (Reactome)
Collagen type I fibrils with lysino-5-ketonorleucine cross-linksREACT_150410 (Reactome)
Collagen type I, II fibrilsREACT_150286 (Reactome)
Collagen type II fibrilREACT_150398 (Reactome)
Collagen type II fibrilREACT_150444 (Reactome)
Collagen type IV networksREACT_150470 (Reactome)
Collagen type VII -NC2 hexamerArrowREACT_150316 (Reactome)
Collagen type VII NC2 proteinasesREACT_150316 (Reactome)
Collagen type VII fibril Laminin-332REACT_150217 (Reactome)
Collagen type VII fibrilREACT_150470 (Reactome)
Collagen type X networkREACT_150398 (Reactome)
Collagen type XI fibrilREACT_150444 (Reactome)
Collagen type XII, XIV fibrilsREACT_150286 (Reactome)
Collagen type XVII fibril Integrin alpha6beta4REACT_150217 (Reactome)
Collagen type XVIIIREACT_150219 (Reactome)
Collagen type XVREACT_150219 (Reactome)
Endostatin releasing proteasesREACT_150219 (Reactome)
H2O2ArrowREACT_150131 (Reactome)
H2O2ArrowREACT_150172 (Reactome)
H2OREACT_150131 (Reactome)
H2OREACT_150172 (Reactome)
Laminin-332REACT_150470 (Reactome)
Lysyl oxidase propeptidesArrowREACT_150462 (Reactome)
Lysyl oxidases Cu2+REACT_150131 (Reactome)
Lysyl oxidases Cu2+REACT_150172 (Reactome)
Lysyl oxidasesArrowREACT_150462 (Reactome)
NH3ArrowREACT_150131 (Reactome)
NH3ArrowREACT_150172 (Reactome)
O2REACT_150131 (Reactome)
O2REACT_150172 (Reactome)
Procollagen C-proteinasesREACT_150462 (Reactome)
REACT_150131 (Reactome) Lysine residues can be converted to allysine by lysyl oxidase. In this representative reaction a single lysine residue in each collagen chain is shown as converted to allysine (Pinnell et al. 1968).
REACT_150172 (Reactome) Hydroxylysines residues can be converted to hydroxyallysines by lysyl oxidase. In this representative reaction a single hydroxylysine residue in each collagen chain is shown as converted to hydroxyallysine (Pinnell et al. 1968, Siegel 1979).
REACT_150217 (Reactome) Type XVII collagen is a component of hemidesmosomes (HDs) (Has & Kern 2010). It associates with integrin alpha6beta4 (a6b4) (Hopkinson et al. 1999). The extracellular region of a6b4 extends from the cell membrane into the basement membrane to bind laminins, with a preference for laminin-332 (Hopkinson & Jones 2000, Sugawara et al. 2008), which is a component of anchoring fibrils. Laminins are complex glycoproteins, consisting of alpha, beta and gamma chains bound into a cross-shaped molecule. Laminin-332 is a complex of alpha-3, beta-2 and gamma-2 subunits. The cytoplasmic domain of integrin beta-4 interacts with other hemidesmosomal components, plectrin and BPAG1. The interaction of a6b4 and plectrin is likely to be the initial step in HD formation (de Pereda et al. 2009). The cytoplasmic domain of collagen type XVII (BP180) binds to integrin beta-4, plectin and BPAG1 (Hopkinson & Jones 2000, Koster et al. 2003). The transmembrane protein CD151 (tetraspanin-24) associates with a6b4 (Sterk et al. 2002) and is essential for the correct assembly of basement membranes in human kidney and skin, possibly having a role in integrin alpha-3 maturation and cell surface expression (Karamatic Crew et al. 2003).
REACT_150219 (Reactome) Collagens XV and XVIII are basement membrane associated collagens that can be cleaved to generate the antiangiogenic peptides restin (endostatin-XV) and endostatin (endostatin-XVIII), respectively (O'Reilly et al. 1997, Ramachandran et al. 1997, Sasaki et al. 2000). Endostatin fragments of differing molecular size (14-30 kDa) have been identified in vivo. Furthermore the C-terminal domains of several other collagens (IV, VIII, XIX) have anti-angiogenic and anti-tumoral activities (Ricard-Blum & Ballut 2011). Several proteases are able to generate endostatin from collagen XVIII including MMP-3, -7, -9, -13 and -20 and cathepsins B, V, S and L (Heljasvaara et al. 2005, Ma et al. 2007, Veillard et al. 2011). Endostatin inhibits proliferation of endothelial cells, angiogenesis and tumor growth in vivo (O'Reilly et al. 1997).
REACT_150249 (Reactome) Lysyl-pyridinoline (L-Pyr) cross-links are formed from two hydroxylysine residues and a lysine residue (LKNL plus a further hydroxyallysine contributed by HLKNL), found mostly in calcified tissues (Bailey et al. 1998).
REACT_150258 (Reactome) Hydroxylysyl-pyridinoline (HL-Pyr) is formed from three hydroxylysine residues, (HLKNL plus a further hydroxyallysine donated by a second HLKNL). It predominates in highly hydroxylated collagens such as type II collagen in cartilage.
REACT_150286 (Reactome) Certain fibril-associated collagens with interrupted triple helices (FACITs) associate with the surface of collagen fibrils, where they may serve to limit fibril fusion and thereby regulate fibril diameter (Ansorge et al. 2009, Gordon & Hahn 2010). Type XII and XIV colalgens are found in association with type I (Walchli et al. 1994) and type II (Watt et al. 1992, Eyre 2002).
REACT_150299 (Reactome) Collagen fibrils are the principal tensile element of the extracellular matrix in a wide range of animal connective tissues. They have a 67 nm axial periodicity in most tissues, 65 nm in vertebrate skin, and are near-circular in transverse section. Fibril diameter depends both on tissue type and stage of development, covering a range of 20-500 nm in vertebrates. Fibril length is less well characterised but fibrils with lengths in the range 1-100 micrometres have been isolated.

Fibril formation is spontaneous (Fallas et al. 2010, Birk & Brückner 2011), but influenced by developmental state and the cellular environment. Several models have been proposed including the simple surface nucleation and propagation (SNAP) model (Trotter et al. 2000) but the mechanism of fibril assembly and regulation of fibril diameter and length are not completely understood (Holmes et al. 2001, Banos et al. 2008). Fibrils frequently contain more than one type of collagen, and the outer surface of fibrils frequently interacts with proteoglycans, fine-tuning its structural and signaling properties (Wess 2005, Kalamajski & Oldberg 2010, Ricard-Blum et al. 2011).

Individual fibril-forming collagen molecules are around 300nm in length. Complete fibrils exhibit a 67 nm periodicity, seen with many different imaging methods. This is due to a staggered overlap of molecules which leads to regions where fewer molecules overlap with a periodicity of 67 nm (Hodge & Petruska 1963, Wess 2005). Laterally, molecules are believed to be packed into a quasi-hexagonal structure (Trus & Piez 1980) resulting in locally ordered crystalline regions interspersed with disordered regions across the lateral plane of the fibril (Hulmes 2002). Interactions between molecules stabilize the fibril, including the formation of divalent and subsequently trivalent crosslinks, unique to collagen, that involve lysine or hydroxylysine residues.
REACT_150302 (Reactome) Collagen VII triple-helices form an anti-parallel dimer, associating through disulfide bonds formed in a 60-nm overlap (NC2 domain) of the amino terminal triple helical ends. A portion of this region is proteolytically removed (Morris et al. 1986, Chen et al. 2001) prior to aggregation of dimers into anchoring fibrils (Lundstrum et al. 1986).
REACT_150311 (Reactome) Collagens IV, VI, VIII and X form open networks. Type IV networks are irregular. Type VIII and X form hexagonal networks. Type VI collagen forms tetramers which aggregate linearly to form beaded filaments, but also associates laterally through the globular domains so forming a network (Baldock et al. 2003, Knupp et al. 2006, ). Type IV collagen is the predominant collagen type in basement membranes (Parkin et al. 2011). It assembles into three distinct networks with differing combinations of alpha chains, namely alpha1.alpha1.alpha2, alpha3.alpha4.alpha5 and alpha1.alpha2.alpha5.alpha6, (Siebold et al. 1988, Gunwar et al. 1998, Borza et al. 2001), the last of these forms through the association of alpha5.alpha5.alpha6 triple-helical protomers and alpha1.alpha1.alpha2 protomers, interacting tail-to-tail at the retained NC1 domains. Further associations are formed by tetramerization of the 7S domain at the N terminus (Timpl et al. 1981, Siebold et al. 1987). These interactions are the most significant for network formation, but a third interaction occurs whereby type IV collagen dimers interact through lateral association (Yurchenco & Furthmayr 1984, Yurchenco & Ruben 1987, Yurchenko & Patton 2009). Collagen type VI forms tetramers and subsequently several types of higher-order structure (Ball et al. 2001, Beecher et al. 2011) that are probably influenced by the association of other matrix constituents such as hyaluronan (Kielty et al. 1992), fibrillin (Ueda & Yue 2003), biglycan and decorin (Wiberg et al. 2001).

Type VIII collagen forms a hexagonal lattice in Descemet's membrane (Shuttleworth 1997). These are thought to be derived from tetrahedral structures that form when 4 type VIII molecules associate via hydrophobic patches on their C-termini, which then associate via their N-terminals (Stephan et al. 2004). Type X collagen is very similar to type VIII and in vitro forms hexagonal arrays, believed to arise from interactions of the globular domains (Kwan et al. 1991, Jacenko et al. 2001). In vivo type X collagen is found associated with cartilage fibrils in the form of fine filaments (Schmidt & Linsenmayer 1990), which may represent hexagonal lattices that have collapsed during sample preparation (Gordon & Hahn 2010).
REACT_150316 (Reactome) Bone morphogenetic protein-1 (BMP1) cleaves the C-terminal propeptide from human procollagen VII within the NC2 domain at the BMP1 consensus cleavage site SYAA|DTAG. Mammalian tolloid-like (mTLL)-1 and -2 can substitute for BMP1 (Ratttenholl et al. 2002).
REACT_150322 (Reactome) Hydroxyallysine and hydroxylysine can react forming the Schiff base, which spontaneously undergoes an Amadori rearrangement resulting in the ketoimine cross-link hydroxylysino-5-ketonorleucine (HLKNL). This is much more stable than the aldimine crosslinks (Bailey et al. 1998).
REACT_150325 (Reactome) Allysine residues condense with hydroxylysine residues to form the aldimine dehydro-hydroxylysino-norleucine (deH-HLNL), first identified by Bailey & Peach (1968).
REACT_150338 (Reactome) Fibrils are components of larger suprafibrillar structures, fibres. The organisation of fibrils varies between tissues; in the cornea fibrils are arranged in parallel within layers but layers have different orientations. In articular cartilage, fibrils are arranged in mostly parallel layers (Wess 2005). Interactions between fibrils are thought to be largely mediated by surface-associated macromolecules, such as anionic glycosaminoglycans (GAGs) and small leucine-rich proteoglycans such as decorin.
REACT_150357 (Reactome) Collagen VII forms anchoring fibrils, composed of antiparallel dimers that connect the dermis to the epidermis (Bruckner-Tuderman 2009). During fibrillogenesis, the nascent type VII procollagen molecules dimerize in an antiparallel manner. The C-propeptides are then removed by bone morphogenetic protein 1 (Rattenholl et al. 2002) and the processed antiparallel dimers laterally aggregate (Gordon & Hahn 2010).
REACT_150362 (Reactome) Histidino-hydroxylysinonorleucine (HHL) cross-links, formed when deH-HLNL reacts with a histidine residue, have been identified in skin and cornea (Yamauchi et al. 1987, 1996, Okada et al. 1997).
REACT_150373 (Reactome) In bone, cross-links are formed between telopeptide hydroxallysine residues and helical lysines (Robins & Bailey 1975). The resulting Schiff base undergoes Amadori rearrangement to form lysino-5-ketonorleucine (LKNL).
REACT_150389 (Reactome) Trivalent collagen cross-links can form as pyrroles. Hydroxylysyl-Pyrrole (HL-Pyrrole) is formed when Hydroxylysino-ketonorleucine (HLKNL) reacts with hydroxylysino-norleucine (deH-HLNL) (Eyre et al. 2008). The mechanism of pyrrole cross-links has been revised to a structure based on 3-hydroxypyrrole, rather than a pyrrole lacking a hydroxyl on the ring as depicted earlier (Bailey et al. 1998).
REACT_150398 (Reactome) In vivo type X collagen is found associated with cartilage fibrils in the form of fine filaments (Schmidt & Linsenmayer 1990), which may represent hexagonal lattices that have collapsed during sample preparation (Gordon & Hahn 2010).
REACT_150410 (Reactome) Trivalent collagen cross-links can also form as pyrroles. Lysyl-Pyrrole (L-Pyrrole) is formed when Lysino-ketonorleucine (LKNL) reacts with Hydroxylysino-norleucine (deH-HLNL) (Eyre et al. 2008), with structures based on a 3-hydroxypyrrole, believed to be the core structure of the pyrrole cross-links in bone collagen, rather than a pyrrole lacking a hydroxyl on the ring as depicted earlier.
REACT_150424 (Reactome) Certain fibril-associated collagens with interrupted triple helices (FACITs) associate with the surface of collagen fibrils, where they may serve to limit fibril fusion and thereby regulate fibril diameter (Gordon & Hahn 2010, Ricard-Blum et al. 2011). Collagen IX cross-linked to the surface of collagen type II fibrils is thought to both regulate fibril diameter and stabilize interfibrillar connections (Eyre et al. 2004). An alternative model suggests that collagen II and XI form a biological alloy (Blaschke et al. 2000).
REACT_150444 (Reactome) Type XI collagen molecules are cross-linked by lysyl oxidase-mediated bonds (Wu & Eyre 1995) primarily in a head-to-tail manner (Eyre et al. 2006). Homopolymers of type XI collagen can form in vitro (Bruckner & van der Rest 1994, Blaschke et al. 2000). Type XI collagen molecules can cross-link with type II collagen forming heterofibrils (Eyre & Wu 2004, 2005).
REACT_150460 (Reactome) Allysine residues can condense with lysine residues forming dehydro-lysinonorleucine (deH-LNL) cross-links. In this representative reaction, all allysine residues are shown as converted to deH-LNL though partial conversion, or conversion to other cross-linked forms is possible (Reiser et al. 1992, Bailey & Peach 1968).
REACT_150462 (Reactome) Lysyl oxidase (LOX) is secreted to the extracellular space in an inactive, proenzyme form (proLOX). This is proteolytically cleaved between Gly168 and Asp169 generating the mature 32-kDa enzyme. The activating proteinase is Bone morphogenetic protein 1 (BMP1), also called Procollagen C-proteinase (Cronshaw et al. 1995, Panchenko et al. 1996). Other extracellular proteases, including the BMP1 variant mammalian tolloid, tolloid-like (TLL) 1 and TLL2 proteases cleave proLOX at the correct physiological site but with lower efficiency (Uzel et al. 2001).
REACT_150470 (Reactome) Anchoring fibrils are structures in skin that consist largely of collagen VII. They extend from the epidermal basement membrane to the dermal stroma where they connect with reticular fibre bundles, largely composed of collagen III (Fleischmajer et al. 1980). The long loop region of collagen VII entraps fibrillar collagens in the papillary dermis (Burgeson 1993). Type VII collagen binds laminin-332 (laminin-5) through the beta3 short arm, and also binds both type IV collagen and interstitial banded collagen fibrils - represented here by their major constituent, collagen I (Nakishima et al. 2005, Brittingham et al. 2006, Villone et al. 2008). Mutations of collagen VII are a cause of dystrophic epidermolysis bullosa, a blistering skin disease where separation occurs in the dermis at the level of anchoring fibrils (Chung & Uitto 2010, Uitto et al. 2010).
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