Flowering time pathway (Arabidopsis thaliana)
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Description
Arabidopsis thaliana is an annual facultative long day plant. The correct timing of flowering is a key adaptive trait in all plants to ensure reproduction. A complex genetic network comprising numerous environmentally and endogenously controlled factors controls the transition from vegetative to reproductive growth. Important pathways responding to environmental cues are the vernalization and the photoperiod pathways whereas the autonomous, gibberellin, age, sugar metabolism and circadian clock pathways react to endogenous signals. Several floral integrator genes to which the various pathways lead, govern the transition from a vegetative to a floral meristem.
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- Bernhardt A, Lechner E, Hano P, Schade V, Dieterle M, Anders M, Dubin MJ, Benvenuto G, Bowler C, Genschik P, Hellmann H; ''CUL4 associates with DDB1 and DET1 and its downregulation affects diverse aspects of development in Arabidopsis thaliana.''; Plant J, 2006 PubMed Europe PMC Scholia
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- Rieu I, Ruiz-Rivero O, Fernandez-Garcia N, Griffiths J, Powers SJ, Gong F, Linhartova T, Eriksson S, Nilsson O, Thomas SG, Phillips AL, Hedden P; ''The gibberellin biosynthetic genes AtGA20ox1 and AtGA20ox2 act, partially redundantly, to promote growth and development throughout the Arabidopsis life cycle.''; Plant J, 2008 PubMed Europe PMC Scholia
- Levy YY, Mesnage S, Mylne JS, Gendall AR, Dean C; ''Multiple roles of Arabidopsis VRN1 in vernalization and flowering time control.''; Science, 2002 PubMed Europe PMC Scholia
- Khanna R, Kronmiller B, Maszle DR, Coupland G, Holm M, Mizuno T, Wu SH; ''The Arabidopsis B-box zinc finger family.''; Plant Cell, 2009 PubMed Europe PMC Scholia
- Blázquez MA, Ahn JH, Weigel D; ''A thermosensory pathway controlling flowering time in Arabidopsis thaliana.''; Nat Genet, 2003 PubMed Europe PMC Scholia
- Farinas B, Mas P; ''Functional implication of the MYB transcription factor RVE8/LCL5 in the circadian control of histone acetylation.''; Plant J, 2011 PubMed Europe PMC Scholia
- Tsuchiya T, Eulgem T; ''The Arabidopsis defense component EDM2 affects the floral transition in an FLC-dependent manner.''; Plant J, 2010 PubMed Europe PMC Scholia
- Ebine K, Uemura T, Nakano A, Ueda T; ''Flowering time modulation by a vacuolar SNARE via FLOWERING LOCUS C in Arabidopsis thaliana.''; PLoS One, 2012 PubMed Europe PMC Scholia
- Piñeiro M, Gómez-Mena C, Schaffer R, Martínez-Zapater JM, Coupland G; ''EARLY BOLTING IN SHORT DAYS is related to chromatin remodeling factors and regulates flowering in Arabidopsis by repressing FT.''; Plant Cell, 2003 PubMed Europe PMC Scholia
- Yang W, Jiang D, Jiang J, He Y; ''A plant-specific histone H3 lysine 4 demethylase represses the floral transition in Arabidopsis.''; Plant J, 2010 PubMed Europe PMC Scholia
- Yoshida N, Yanai Y, Chen L, Kato Y, Hiratsuka J, Miwa T, Sung ZR, Takahashi S; ''EMBRYONIC FLOWER2, a novel polycomb group protein homolog, mediates shoot development and flowering in Arabidopsis.''; Plant Cell, 2001 PubMed Europe PMC Scholia
- Bezerra IC, Michaels SD, Schomburg FM, Amasino RM; ''Lesions in the mRNA cap-binding gene ABA HYPERSENSITIVE 1 suppress FRIGIDA-mediated delayed flowering in Arabidopsis.''; Plant J, 2004 PubMed Europe PMC Scholia
- Tsuchiya T, Eulgem T; ''Co-option of EDM2 to distinct regulatory modules in Arabidopsis thaliana development.''; BMC Plant Biol, 2010 PubMed Europe PMC Scholia
- Xu L, Zhao Z, Dong A, Soubigou-Taconnat L, Renou JP, Steinmetz A, Shen WH; ''Di- and tri- but not monomethylation on histone H3 lysine 36 marks active transcription of genes involved in flowering time regulation and other processes in Arabidopsis thaliana.''; Mol Cell Biol, 2008 PubMed Europe PMC Scholia
- Choi K, Park C, Lee J, Oh M, Noh B, Lee I; ''Arabidopsis homologs of components of the SWR1 complex regulate flowering and plant development.''; Development, 2007 PubMed Europe PMC Scholia
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- Knight H, Thomson AJ, McWatters HG; ''Sensitive to freezing6 integrates cellular and environmental inputs to the plant circadian clock.''; Plant Physiol, 2008 PubMed Europe PMC Scholia
- Sugano S, Andronis C, Green RM, Wang ZY, Tobin EM; ''Protein kinase CK2 interacts with and phosphorylates the Arabidopsis circadian clock-associated 1 protein.''; Proc Natl Acad Sci U S A, 1998 PubMed Europe PMC Scholia
- Kim DH, Kang JG, Yang SS, Chung KS, Song PS, Park CM; ''A phytochrome-associated protein phosphatase 2A modulates light signals in flowering time control in Arabidopsis.''; Plant Cell, 2002 PubMed Europe PMC Scholia
- Yu X, Michaels SD; ''The Arabidopsis Paf1c complex component CDC73 participates in the modification of FLOWERING LOCUS C chromatin.''; Plant Physiol, 2010 PubMed Europe PMC Scholia
- McGinnis KM, Thomas SG, Soule JD, Strader LC, Zale JM, Sun TP, Steber CM; ''The Arabidopsis SLEEPY1 gene encodes a putative F-box subunit of an SCF E3 ubiquitin ligase.''; Plant Cell, 2003 PubMed Europe PMC Scholia
- Herr AJ, Monlàr A, Jones A, Baulcombe DC; ''Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis.''; Proc Natl Acad Sci U S A, 2006 PubMed Europe PMC Scholia
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- Wang L, Fujiwara S, Somers DE; ''PRR5 regulates phosphorylation, nuclear import and subnuclear localization of TOC1 in the Arabidopsis circadian clock.''; EMBO J, 2010 PubMed Europe PMC Scholia
- Lu SX, Webb CJ, Knowles SM, Kim SH, Wang Z, Tobin EM; ''CCA1 and ELF3 Interact in the control of hypocotyl length and flowering time in Arabidopsis.''; Plant Physiol, 2012 PubMed Europe PMC Scholia
- Jiang D, Yang W, He Y, Amasino RM; ''Arabidopsis relatives of the human lysine-specific Demethylase1 repress the expression of FWA and FLOWERING LOCUS C and thus promote the floral transition.''; Plant Cell, 2007 PubMed Europe PMC Scholia
- Melzer S, Kampmann G, Chandler J, Apel K; ''FPF1 modulates the competence to flowering in Arabidopsis.''; Plant J, 1999 PubMed Europe PMC Scholia
- Kim SY, Lee J, Eshed-Williams L, Zilberman D, Sung ZR; ''EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development.''; PLoS Genet, 2012 PubMed Europe PMC Scholia
- Behringer C, Schwechheimer C; ''B-GATA transcription factors - insights into their structure, regulation, and role in plant development.''; Front Plant Sci, 2015 PubMed Europe PMC Scholia
- Hall A, Bastow RM, Davis SJ, Hanano S, McWatters HG, Hibberd V, Doyle MR, Sung S, Halliday KJ, Amasino RM, Millar AJ; ''The TIME FOR COFFEE gene maintains the amplitude and timing of Arabidopsis circadian clocks.''; Plant Cell, 2003 PubMed Europe PMC Scholia
- Mayfield JD, Folta KM, Paul AL, Ferl RJ; ''The 14-3-3 Proteins mu and upsilon influence transition to flowering and early phytochrome response.''; Plant Physiol, 2007 PubMed Europe PMC Scholia
- Daniel X, Sugano S, Tobin EM; ''CK2 phosphorylation of CCA1 is necessary for its circadian oscillator function in Arabidopsis.''; Proc Natl Acad Sci U S A, 2004 PubMed Europe PMC Scholia
- Farrona S, Hurtado L, March-Díaz R, Schmitz RJ, Florencio FJ, Turck F, Amasino RM, Reyes JC; ''Brahma is required for proper expression of the floral repressor FLC in Arabidopsis.''; PLoS One, 2011 PubMed Europe PMC Scholia
- Kandasamy MK, Deal RB, McKinney EC, Meagher RB; ''Silencing the nuclear actin-related protein AtARP4 in Arabidopsis has multiple effects on plant development, including early flowering and delayed floral senescence.''; Plant J, 2005 PubMed Europe PMC Scholia
- Taoka K, Ohki I, Tsuji H, Furuita K, Hayashi K, Yanase T, Yamaguchi M, Nakashima C, Purwestri YA, Tamaki S, Ogaki Y, Shimada C, Nakagawa A, Kojima C, Shimamoto K; ''14-3-3 proteins act as intracellular receptors for rice Hd3a florigen.''; Nature, 2011 PubMed Europe PMC Scholia
- Krichevsky A, Kozlovsky SV, Gutgarts H, Citovsky V; ''Arabidopsis co-repressor complexes containing polyamine oxidase-like proteins and plant-specific histone methyltransferases.''; Plant Signal Behav, 2007 PubMed Europe PMC Scholia
- Iuchi S, Suzuki H, Kim YC, Iuchi A, Kuromori T, Ueguchi-Tanaka M, Asami T, Yamaguchi I, Matsuoka M, Kobayashi M, Nakajima M; ''Multiple loss-of-function of Arabidopsis gibberellin receptor AtGID1s completely shuts down a gibberellin signal.''; Plant J, 2007 PubMed Europe PMC Scholia
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- del Olmo I, López-González L, Martín-Trillo MM, Martínez-Zapater JM, Piñeiro M, Jarillo JA; ''EARLY IN SHORT DAYS 7 (ESD7) encodes the catalytic subunit of DNA polymerase epsilon and is required for flowering repression through a mechanism involving epigenetic gene silencing.''; Plant J, 2010 PubMed Europe PMC Scholia
History
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External references
DataNodes
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Name | Type | Database reference | Comment |
---|---|---|---|
? | |||
ABF1 | GeneProduct | AT1G49720 (TAIR) | Related to flowering; no pathway found. |
ABF2 | GeneProduct | AT1G45249 (TAIR) | Related to flowering; no pathway found. |
ABF3 | GeneProduct | AT4G34000 (TAIR) | Related to flowering; no pathway found. |
ABF4 | GeneProduct | AT3G19290 (TAIR) | |
ABH1 | GeneProduct | AT2G13540 (TAIR) | |
ABI5 | GeneProduct | AT2G36270 (TAIR) | |
AGAL2 | GeneProduct | AT5G08370 (TAIR) | MA Related to flowering; no pathway found. |
AGL14/ XAL2 | GeneProduct | AT4G11880 (TAIR) | MADS-box gene preferentially expressed in the root |
AGL16 | GeneProduct | AT3G57230 (TAIR) | |
AGL17 | GeneProduct | AT2G22630 (TAIR) | |
AGL18 | GeneProduct | AT3G57390 (TAIR) | |
AGL19 | GeneProduct | AT4G22950 (TAIR) | |
AGL24 | GeneProduct | AT4G24540 (TAIR) | |
AGL6 | GeneProduct | AT2G45650 (TAIR) | AGL6 acts as a floral promoter with a dual role; inhibition of FLC, promotion of FT expression |
AGL74 | GeneProduct | AT1G48150 (TAIR) | |
AGL79 | GeneProduct | AT3G30260 (TAIR) | |
AP1 | GeneProduct | AT1G69120 (TAIR) | |
AP2 | GeneProduct | AT4G36920 (TAIR) | |
ARP4 | GeneProduct | AT1G18450 (TAIR) | Related to flowering; no pathway found. |
ARP6 | GeneProduct | AT3G33520 (TAIR) | Denotes the SWR1 complex consisting of PIE1,SEF1 and ARP6 |
ATC | GeneProduct | AT2G27550 (TAIR) | |
ATH1 | GeneProduct | AT4G32980 (TAIR) | |
ATMYB33 | GeneProduct | AT5G06100 (TAIR) | |
ATX1 | GeneProduct | AT2G31650 (TAIR) | |
ATbZIP15 | GeneProduct | AT5G42910 (TAIR) | Related to flowering; no pathway found. |
AtBMI1A | GeneProduct | AT2G30580 (TAIR) | |
AtDOF1.3 | GeneProduct | AT1G26790 (TAIR) | |
AtDOF2.3 | GeneProduct | AT2G34140 (TAIR) | DL4430C |
AtRING1A | GeneProduct | AT5G10380 (TAIR) | |
B3H7I2 | GeneProduct | AT4G16810 (TAIR) | DL4430C |
BES1 | GeneProduct | AT1G19350 (TAIR) | BES1 recruits other transcriptional regulators such as ELF6 and REF6 to regulate target gene expression and coordinate BR responses with other developmental processes such as control of flowering time |
BFT | GeneProduct | AT5G62040 (TAIR) | |
BRM | GeneProduct | AT2G46020 (TAIR) | Partially redundant with autonomous pathway; acts through photoperiod pathway to suppress the floral promoters CO, FT and SOC1 and the floral repressor FLC. |
CAL | GeneProduct | AT1G26310 (TAIR) | |
CAM4 | GeneProduct | AT1G66410 (TAIR) | |
CCA1 | GeneProduct | AT2G46830 (TAIR) | |
CDF1 | GeneProduct | AT5G62430 (TAIR) | |
CDF2 | GeneProduct | AT5G39660 (TAIR) | |
CDF3 | GeneProduct | AT3G47500 (TAIR) | |
CDF5 | GeneProduct | At1g69570 (TAIR) | |
CHE | GeneProduct | AT5G08330 (TAIR) | |
CIB1 | GeneProduct | AT4G34530 (TAIR) | |
CK2alphaA | GeneProduct | AT5G67380 (TAIR) | |
CK2alphaB | GeneProduct | AT3G50000 (TAIR) | |
CK2alphaC | GeneProduct | AT2G23080 (TAIR) | Symbol assigned by Mamatha Hanumappa, 16-Nov-2011 |
CK2alphaCp | GeneProduct | AT2G23070 (TAIR) | Symbol assigned by Mamatha Hanumappa, 16-Nov-2011 |
CK2beta1 | GeneProduct | AT5G47080 (TAIR) | |
CK2beta2 | GeneProduct | AT4G17640 (TAIR) | |
CK2beta3 | GeneProduct | AT3G60250 (TAIR) | |
CK2beta4 | GeneProduct | AT2G44680 (TAIR) | |
CLF | GeneProduct | AT2G23380 (TAIR) | |
CO | GeneProduct | AT5G15840 (TAIR) | |
COL1 | GeneProduct | AT5G15850 (TAIR) | |
COL2 | GeneProduct | AT3G02380 (TAIR) | |
COL3 | GeneProduct | AT2G24790 (TAIR) | |
COL4 | GeneProduct | AT5G24930 (TAIR) | |
COL5 | GeneProduct | AT5G57660 (TAIR) | |
COL9/ BBX7 | GeneProduct | AT3G07650 (TAIR) | |
COP1 | GeneProduct | AT2G32950 (TAIR) | |
COR15a | GeneProduct | AT2G42540 (TAIR) | |
CRP | GeneProduct | AT4G00450 (TAIR) | Related to flowering; no pathway found. |
CRY1 | GeneProduct | AT4G08920 (TAIR) | |
CRY2 | GeneProduct | AT1G04400 (TAIR) | |
CSD2 | GeneProduct | AT2G28190 (TAIR) | |
CUL4 | GeneProduct | AT5G46210 (TAIR) | |
DCAF1 | GeneProduct | AT4G31160 (TAIR) | |
DDB1A | GeneProduct | AT4G05420 (TAIR) | |
DDB1B | GeneProduct | AT4G21100 (TAIR) | |
DDB2 | GeneProduct | AT5G58760 (TAIR) | |
DDF1 | GeneProduct | AT1G12610 (TAIR) | |
DDF2 | GeneProduct | AT1G63030 (TAIR) | |
DET1 | GeneProduct | AT4G10180 (TAIR) | |
DNF | GeneProduct | AT3G19140 (TAIR) | |
DOF1.5 | GeneProduct | AT1G29160 (TAIR) | |
EARLI1 | GeneProduct | AT4G12480 (TAIR) | bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein; Represses FLC, activates SOC1 and FT. |
EBS | GeneProduct | AT4G22140 (TAIR) | |
EDF3 | GeneProduct | AT3G25730 (TAIR) | Related to flowering; no pathway found. |
EDM2 | GeneProduct | AT5G55390 (TAIR) | |
EEC | GeneProduct | AT3G21320 (TAIR) | DL4430C |
EEL | GeneProduct | AT2G41070 (TAIR) | DL4430C |
EFS | GeneProduct | AT1G77300 (TAIR) | |
ELF3 | GeneProduct | AT2G25930 (TAIR) | |
ELF4-L1 | GeneProduct | AT2G29950 (TAIR) | |
ELF4-L2 | GeneProduct | AT1G72630 (TAIR) | |
ELF4-L3 | GeneProduct | AT2G06255 (TAIR) | |
ELF4-L4 | GeneProduct | AT1G17455 (TAIR) | |
ELF4 | GeneProduct | AT2G40080 (TAIR) | |
ELF5 | GeneProduct | AT5G62640 (TAIR) | |
ELF6 | GeneProduct | AT5G04240 (TAIR) | ELF6 does not function in the same pathway as the FLC-dependent pathway but rather functions as an upstream repressor of the photoperiodic flowering pathway (PMID 15377760). BES1 recruits ELF6 and REF6, among others, to coordinate BR responses with other developmental processes such as control of flowering time |
ELF7/VIP2 | GeneProduct | AT1G79730 (TAIR) | |
ELF8/VIP6 | GeneProduct | AT2G06210 (TAIR) | |
ELF9 | GeneProduct | AT5G16260 (TAIR) | |
EMF1 | GeneProduct | AT5G11530 (TAIR) | EMF1 functions as a Polycomb Group protein |
EMF2 | GeneProduct | AT5G51230 (TAIR) | |
ESD4 | GeneProduct | AT4G15880 (TAIR) | |
ESD7 | GeneProduct | AT1G08260 (TAIR) | |
ESP4 | GeneProduct | AT5G01400 (TAIR) |
|
F3L24.6 | GeneProduct | AT3G09190 (TAIR) | Regulates flowering time in Ws ecotype. Putative Lectin. |
FAS2 | GeneProduct | AT5G64630 (TAIR) | FAS2 may function downstream of ESD7 FAS2 and ICU2 interact with ESD7 in the control of flowering time |
FCA | GeneProduct | AT4G16280 (TAIR) | |
FD | GeneProduct | AT4G35900 (TAIR) |
|
FDP | GeneProduct | AT2G17770 (TAIR) | |
FES1 | GeneProduct | AT2G33835 (TAIR) | |
FIE1/ FIS3 | GeneProduct | AT3G20740 (TAIR) | |
FIE2/ FIS2 | GeneProduct | AT2G35670 (TAIR) | Similar to EMF2 |
FIO1 | GeneProduct | AT2G21070 (TAIR) | |
FKF1 | GeneProduct | AT1G68050 (TAIR) | |
FLC | GeneProduct | AT5G10140 (TAIR) | |
FLC | GeneProduct | AT5G10140 (TAIR) | |
FLD | GeneProduct | AT3G10390 (TAIR) | |
FLK | GeneProduct | AT3G04610 (TAIR) | |
FLX | GeneProduct | AT2G30120 (TAIR) | |
FPA | GeneProduct | AT2G43410 (TAIR) | |
FPF1 | GeneProduct | AT5G24860 (TAIR) | |
FRI-LP1 | GeneProduct | AT5G27220 (TAIR) |
|
FRI | GeneProduct | AT4G00650 (TAIR) | |
FRL1 | GeneProduct | AT5G16320 (TAIR) | |
FRL2 | GeneProduct | AT1G31814 (TAIR) | |
FT | GeneProduct | AT1G65480 (TAIR) | |
FUL | GeneProduct | AT5G60910 (TAIR) | |
FUS9 | GeneProduct | AT3G13550 (TAIR) | |
FVE | GeneProduct | AT2G19520 (TAIR) | |
FWA | GeneProduct | AT4G25530 (TAIR) | |
FY | GeneProduct | AT5G13480 (TAIR) | |
FYPP3 | GeneProduct | AT1G50370 (TAIR) | |
GA1 | GeneProduct | AT4G02780 (TAIR) | |
GA | Metabolite | Gibberellic Acid (Wikipedia) | GA1 catalyzes conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) in gibberellin biosynthesis. |
GAI | GeneProduct | AT1G14920 (TAIR) | |
GBF4 | GeneProduct | AT1G03970 (TAIR) | Related to flowering; no pathway found. |
GI | GeneProduct | AT1G22770 (TAIR) | |
GID1A | GeneProduct | AT3G05120 (TAIR) | AFFINITY TO GA4; ASSOCIATED WITH GID1B AND C WHICH ARE FUNCTIONALLY REDUNDANT |
GID1B | GeneProduct | AT3G63010 (TAIR) | ASSOCIATED WITH GID1A AND C WHICH ARE FUNCTIONALLY REDUNDANT |
GID1C | GeneProduct | AT5G27320 (TAIR) | FUNCTIONALLY REDUNDANT TO GID1A AND B |
GRF1 | GeneProduct | AT4G09000 (TAIR) | |
GRF2 | GeneProduct | AT1G78300 (TAIR) | |
GRF3 | GeneProduct | AT5G38480 (TAIR) |
|
GRF4 | GeneProduct | AT1G35160 (TAIR) | |
GRF5 | GeneProduct | AT5G16050 (TAIR) | |
GRF6 | GeneProduct | AT5G10450 (TAIR) | |
GRF7 | GeneProduct | AT3G02520 (TAIR) | |
GRF8 | GeneProduct | AT5G65430 (TAIR) | |
GRF9 | GeneProduct | AT2G42590 (TAIR) | |
HFR1 | GeneProduct | AT1G02340 (TAIR) | |
HOS1 | GeneProduct | AT2G39810 (TAIR) | |
HRB1 | GeneProduct | AT5G49230 (TAIR) | HRB1 may regulate FT expression and flowering downstream of cry2 under LD and may modulate phyB light quality flowering pathway |
HUA2 | GeneProduct | AT5G23150 (TAIR) | |
ICU2 | GeneProduct | AT5G67100 (TAIR) | ICU2 Gene Encodes the Catalytic Subunit of DNA Polymerase α |
JMJ13 | GeneProduct | AT5G46910 (TAIR) | Based on Rice. Assigned based on PMID:18765808 by Mamatha Hanumappa, 18-Nov-2011 |
JMJ14 | GeneProduct | AT4G20400 (TAIR) | PKDM7B |
LD | GeneProduct | AT4G02560 (TAIR) | |
LDL1/SWP1 | GeneProduct | AT1G62830 (TAIR) | histone deacetylase complex component |
LDL2 | GeneProduct | AT3G13682 (TAIR) | |
LFY | GeneProduct | AT5G61850 (TAIR) | |
LHCB3 | GeneProduct | AT5G54270 (TAIR) | LHCB*3 |
LHY | GeneProduct | AT1G01060 (TAIR) | |
LKP2 | GeneProduct | AT2G18915 (TAIR) | |
LUX | GeneProduct | AT3G46640 (TAIR) | |
LWD1 | GeneProduct | AT1G12910 (TAIR) | |
LWD2 | GeneProduct | AT3G26640 (TAIR) | |
MAF1 | GeneProduct | AT1G77080 (TAIR) | |
MAF2 | GeneProduct | AT5G65050 (TAIR) | |
MAF3 | GeneProduct | AT5G65060 (TAIR) | Considered "FLC-related" |
MAF4 | GeneProduct | AT5G65070 (TAIR) | Considered "FLC-related" |
MAF5 | GeneProduct | AT5G65080 (TAIR) | Considered "FLC-related" |
MBD9 | GeneProduct | AT3G01460 (TAIR) | |
MEA/
SDG5/ FIS1 | GeneProduct | AT1G02580 (TAIR) | |
MFT | GeneProduct | AT1G18100 (TAIR) | |
MSI1 | GeneProduct | AT5G58230 (TAIR) | |
NDPK2 | GeneProduct | AT5G63310 (TAIR) | INTERACTS WITH PRMT5 TO PROMOTE VEGETATIVE GROWTH |
NF-YA10 | GeneProduct | AT5G06510 (TAIR) | |
NF-YA1 | GeneProduct | AT5G12840 (TAIR) | |
NF-YA2 | GeneProduct | AT3G05690 (TAIR) | |
NF-YA3 | GeneProduct | AT1G72830 (TAIR) | |
NF-YA4 | GeneProduct | AT2G34720 (TAIR) | |
NF-YA5 | GeneProduct | AT1G54160 (TAIR) | |
NF-YA6 | GeneProduct | AT3G14020 (TAIR) | |
NF-YA7 | GeneProduct | AT1G30500 (TAIR) | |
NF-YA8 | GeneProduct | AT1G17590 (TAIR) | |
NF-YA9 | GeneProduct | AT3G20910 (TAIR) | |
NF-YB10 | GeneProduct | AT3G53340 (TAIR) | |
NF-YB11 | GeneProduct | AT2G27470 (TAIR) | |
NF-YB12 | GeneProduct | AT5G08190 (TAIR) | |
NF-YB13 | GeneProduct | AT5G23090 (TAIR) | |
NF-YB1 | GeneProduct | AT2G38880 (TAIR) | |
NF-YB2 | GeneProduct | AT5G47640 (TAIR) | |
NF-YB3 | GeneProduct | AT4G14540 (TAIR) | |
NF-YB4 | GeneProduct | AT1G09030 (TAIR) | |
NF-YB5 | GeneProduct | AT2G47810 (TAIR) | |
NF-YB6 | GeneProduct | AT5G47670 (TAIR) | |
NF-YB7 | GeneProduct | AT2G13570 (TAIR) | |
NF-YB8 | GeneProduct | AT2G37060 (TAIR) | |
NF-YB9 | GeneProduct | AT1G21970 (TAIR) | |
NF-YC10 | GeneProduct | AT1G07980 (TAIR) | |
NF-YC11 | GeneProduct | AT3G12480 (TAIR) | |
NF-YC12 | GeneProduct | AT5G38140 (TAIR) | |
NF-YC13 | GeneProduct | AT5G43250 (TAIR) | |
NF-YC1 | GeneProduct | AT3G48590 (TAIR) | |
NF-YC2 | GeneProduct | AT1G56170 (TAIR) | |
NF-YC3 | GeneProduct | AT1G54830 (TAIR) | |
NF-YC4 | GeneProduct | AT5G63470 (TAIR) | |
NF-YC5 | GeneProduct | AT5G50490 (TAIR) | |
NF-YC6 | GeneProduct | AT5G50480 (TAIR) | |
NF-YC7 | GeneProduct | AT5G50470 (TAIR) | |
NF-YC8 | GeneProduct | AT5G27910 (TAIR) | |
NF-YC9 | GeneProduct | AT1G08970 (TAIR) | |
NUC | GeneProduct | AT5G44160 (TAIR) | Reciprocal BLAST showed that NUC/IDD8 is homologous to rice ID1 |
PAF1 | GeneProduct | AT5G42790 (TAIR) | |
PAF2 | GeneProduct | AT1G47250 (TAIR) | Related to flowering; no pathway found. |
PCFS4 | GeneProduct | AT4G04885 (TAIR) | Forms a complex with FY |
PEP | GeneProduct | AT4G26000 (TAIR) | |
PFT1 | GeneProduct | AT1G25540 (TAIR) | |
PHP/ CDC73 | GeneProduct | AT3G22590 (TAIR) | |
PHYA | GeneProduct | AT1G09570 (TAIR) | |
PHYB | GeneProduct | AT2G18790 (TAIR) | |
PHYC | GeneProduct | AT5G35840 (TAIR) | |
PHYD | GeneProduct | AT4G16250 (TAIR) | |
PHYE | GeneProduct | AT4G18130 (TAIR) | |
PIE1 | GeneProduct | AT3G12810 (TAIR) | This denotes the SWR1 complex consisting of PIE1,SEF1 and ARP6 |
PIF3 | GeneProduct | AT1G09530 (TAIR) | |
PIF4 | GeneProduct | AT2G43010 (TAIR) | |
PIF6 | GeneProduct | AT3G62090 (TAIR) | |
PIF7 | GeneProduct | AT5G61270 (TAIR) | |
PIL6 | GeneProduct | AT3G59060 (TAIR) | |
PIN1AT | GeneProduct | AT2G18040 (TAIR) | |
PKDM7C | GeneProduct | AT2G34880 (TAIR) | Due to high homology with PKDM7B, may also be involved with downregulation of FT/TSF |
PKDM7D | GeneProduct | AT1G08620 (TAIR) | PKDM7D. Due to high homology with PKDM7B, may also be involved with downregulation of FT/TSF |
PRR3 | GeneProduct | AT5G60100 (TAIR) | |
PRR5 | GeneProduct | AT5G24470 (TAIR) | |
PRR7 | GeneProduct | AT5G02810 (TAIR) | |
PRR9 | GeneProduct | AT2G46790 (TAIR) | |
RAV1 | GeneProduct | AT1G13260 (TAIR) | RAV1 is an orthologue of TEM1 and TEM2 |
RAVL2 | GeneProduct | AT1G50680 (TAIR) | Assigned by Mamatha Hanumappa, 18-Nov-2011 |
RAVL3 | GeneProduct | AT1G51120 (TAIR) | Assigned by Mamatha Hanumappa, 18-Nov-2011 |
RBX1 | GeneProduct | AT5G20570 (TAIR) | |
REF6 | GeneProduct | AT3G48430 (TAIR) | In other pathway REF6 is listed as interacting with FT - please edit BES1 recruits other transcriptional regulators such as ELF6 and REF6 to regulate target gene expression and coordinate BR responses with other developmental processes such as control of flowering time |
RFI2 | GeneProduct | AT2G47700 (TAIR) | |
RGA1 | GeneProduct | AT2G01570 (TAIR) | |
RGL1 | GeneProduct | AT1G66350 (TAIR) | |
RGL2 | GeneProduct | AT3G03450 (TAIR) | |
RVE8 | GeneProduct | AT3G09600 (TAIR) |
|
SAL1 | GeneProduct | AT5G63980 (TAIR) | Related to flowering; no pathway found.
ExP; MA Bifunctional protein – regulates flowering time via its 3'(2'),5'-bisphosphate nucleotidase activity promotes flowering, possibly in the photoperiod pathway upstream of FT but downstream of phyB |
SDG25 | GeneProduct | AT5G42400 (TAIR) | |
SDG26 | GeneProduct | AT1G76710 (TAIR) | |
SDG9/
SUVH5/ CZS | GeneProduct | AT2G35160 (TAIR) | |
SEF | GeneProduct | AT5G37055 (TAIR) | Denotes the SWR1 complex consisting of PIE1,SEF1 and ARP6 |
SFR6 | GeneProduct | AT4G04920 (TAIR) | Related to flowering. SFR6 acts upstream of CCA1 GI and TOC1 |
SINAT5 | GeneProduct | AT5G53360 (TAIR) | E3 ubiquitin ligase |
SKB1 | GeneProduct | AT4G31120 (TAIR) | SKB1;Represses FLC by H4R3sme2 histone demethylation of promoter |
SLY1 | GeneProduct | AT4G24210 (TAIR) | |
SMZ | GeneProduct | AT3G54990 (TAIR) | |
SNZ | GeneProduct | AT2G39250 (TAIR) | RAV1 is an orthologue of TEM1 and TEM2 |
SOC1 | GeneProduct | AT2G45660 (TAIR) | |
SPA1 | GeneProduct | AT2G46340 (TAIR) | |
SPA2 | GeneProduct | AT4G11110 (TAIR) | |
SPA3 | GeneProduct | AT3G15354 (TAIR) | |
SPA4 | GeneProduct | AT1G53090 (TAIR) | |
SPL10 | GeneProduct | AT1G27370 (TAIR) | |
SPL15 | GeneProduct | AT3G57920 (TAIR) | |
SPL3 | GeneProduct | AT2G33810 (TAIR) | |
SPL4 | GeneProduct | AT1G53160 (TAIR) | Most likely has overlapping roles with SPL3 |
SPL5 | GeneProduct | AT3G15270 (TAIR) | Most likely has overlapping roles with SPL3 |
SPL9 | GeneProduct | AT2G42200 (TAIR) | |
SPY | GeneProduct | AT3G11540 (TAIR) | |
SRR1 | GeneProduct | AT5G59560 (TAIR) | |
SRT2 | GeneProduct | AT5G09230 (TAIR) | |
SUF4 | GeneProduct | AT1G30970 (TAIR) | |
SUS4 | GeneProduct | AT3G43190 (TAIR) | |
SVP | GeneProduct | AT2G22540 (TAIR) | |
SWN | GeneProduct | AT4G02020 (TAIR) | |
TEM1 | GeneProduct | AT1G25560 (TAIR) | |
TEM2 | GeneProduct | AT1G68840 (TAIR) | TEM2 is synonomous with RAV2 |
TFL1 | GeneProduct | AT5G03840 (TAIR) | |
TFL2/ LHP1 | GeneProduct | AT5G17690 (TAIR) | |
TFL2 | GeneProduct | AT5G17690 (TAIR) | |
TIC | GeneProduct | AT3G22380 (TAIR) | |
TOC1/PRR1 | GeneProduct | AT5G61380 (TAIR) | PRR1 |
TOE1 | GeneProduct | AT2G28550 (TAIR) | |
TOE2 | GeneProduct | AT5G60120 (TAIR) | DL4430C |
TOE3 | GeneProduct | AT5G67180 (TAIR) | DL4430C |
TPS1 | GeneProduct | AT1G78580 (TAIR) | |
TSF | GeneProduct | AT4G20370 (TAIR) | Partially redundant paralog of FT |
TT16 | GeneProduct | AT5G23260 (TAIR) | |
U2AF35A | GeneProduct | AT1G27650 (TAIR) | Splicing factor |
VEL1/ VIL2 | GeneProduct | AT4G30200 (TAIR) | |
VEL3 | GeneProduct | AT2G18870 (TAIR) | |
VIL1/ VRN5 | GeneProduct | AT3G24440 (TAIR) | |
VIL2/ VEL1 | GeneProduct | AT4G30200 (TAIR) | |
VIL3/ VEL2 | GeneProduct | AT2G18880 (TAIR) | |
VIN3 | GeneProduct | AT5G57380 (TAIR) | chromatin remodeling PHD finger protein |
VIP3 | GeneProduct | AT4G29830 (TAIR) | |
VIP4 | GeneProduct | AT5G61150 (TAIR) | |
VRN1 | GeneProduct | AT3G18990 (TAIR) | |
VRN2 | GeneProduct | AT4G16845 (TAIR) | |
WER | GeneProduct | AT5G14750 (TAIR) | Regulates/maintains FT mRNA stability in long days. Not co-localized with FT; controls flowering through photoperiod pathway. |
WNK1 | GeneProduct | AT3G04910 (TAIR) | |
WNK5 | GeneProduct | AT3G51630 (TAIR) | mutant is late flowering (see TAIR entry): Involved in flowering: non-traceable author statement: Pavel Lizal et al 2004 Related to flowering; no pathway found. |
WNK8 | GeneProduct | AT5G41990 (TAIR) | |
ZTL | GeneProduct | AT5G57360 (TAIR) | |
bZIP13 | GeneProduct | AT5G44080 (TAIR) | |
miRNA156 | Rna | AJ493620 (EMBL) | |
miRNA172 | Rna | AJ496802 (EMBL) |
Annotated Interactions
No annotated interactions