Help:WikiPathways Portals

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Portals within WikiPathways serve as organizing points for communities with focused pathway interests.  
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{| class="wikitable sortable" style="float:left; margin-left: 10px;"
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|-
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| Portals within WikiPathways serve as organizing points for communities with focused pathway interests.  
For example, a portal could organize pathways for a particular species or research area.  
For example, a portal could organize pathways for a particular species or research area.  
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<br>Creating a portal is easy using existing templates available from WikiPathways.  
<br>Creating a portal is easy using existing templates available from WikiPathways.  
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If you are interested, please [https://docs.google.com/document/d/176BshTLE97V-gjzWrt0cgZEpQwnGUI86NdTaatETeSU/edit?pli=1#heading=h.b85xd25jlcie consult the portal maintenance guide] and [[Contact_Us|contact us]] for assistance.
If you are interested, please [https://docs.google.com/document/d/176BshTLE97V-gjzWrt0cgZEpQwnGUI86NdTaatETeSU/edit?pli=1#heading=h.b85xd25jlcie consult the portal maintenance guide] and [[Contact_Us|contact us]] for assistance.
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|| <h2 class="frontPagePanel blueFg">Community Featured Pathways Blau</h2>{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} | Curation:Blau | true}}
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<br>WikiPathways has a growing list of portals:
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|-
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|<br>WikiPathways has a growing list of portals:
* [[Portal:AOP|Adverse Outcome Pathway]]
* [[Portal:AOP|Adverse Outcome Pathway]]
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* [[Portal:Reactome|Reactome]]
* [[Portal:Reactome|Reactome]]
* [[Portal:SkeletalDysplasia|Skeletal Dysplasia]]
* [[Portal:SkeletalDysplasia|Skeletal Dysplasia]]
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* [[Portal:WormBase|WormBase]]
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* [[Portal:WormBase|WormBase]]  
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|| <h2 class="frontPagePanel blueFg">Community Featured Pathways COVID-19</h2>{{ #pathwayOfTheDay: {{LOCALDAYNAME}} {{LOCALDAY}} {{LOCALMONTHNAME}} {{LOCALYEAR}} | Curation:COVID19 | true}}
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|}
[[Category:Portals]]
[[Category:Portals]]

Revision as of 09:28, 3 September 2020

Portals within WikiPathways serve as organizing points for communities with focused pathway interests.

For example, a portal could organize pathways for a particular species or research area.

The main advantages of portals include:

  • Simplified drawing and collecting your pathways
  • Help to keep track of ‘works-in-progress’ with collaborators
  • Help attribute credit for pathway authors and curators
  • Attract new collaborators
  • Help to define a community


Creating a portal is easy using existing templates available from WikiPathways.

If you are interested, please consult the portal maintenance guide and contact us for assistance.

Community Featured Pathways Blau

Unable to get pathway of the day: There are no pathways tagged with 'Curation:Blau'!


WikiPathways has a growing list of portals:

Community Featured Pathways COVID-19

ACE2 inhibition leads to pulmonary fibrosis (Homo sapiens)
invalid pathway title: exception 'Exception' with message 'Unable to convert to /var/www/wikipathways/images/1/17/WP5035_111709.svg:
Status:1
Message:Exception in thread "main" java.lang.NullPointerException at org.pathvisio.core.Engine.getPathwayImporters(Unknown Source) at org.pathvisio.core.Engine.importPathway(Unknown Source) at org.pathvisio.core.util.Converter.main(Unknown Source)


Command:java -Xmx1024M -jar /var/www/wikipathways/wpi/bin/pathvisio_core.jar "/var/www/wikipathways" "/var/www/wikipathways/images/1/17/WP5035_111709.svg" 2>&1
' in /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php:1255 Stack trace:

  1. 0 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1227): Pathway::convertWithPathVisio(false, '/var/www/wikipa...')
  2. 1 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1137): Pathway->saveConvertedByPathVisioCache('svg')
  3. 2 /var/www/wikipathways/wpi/extensions/Pathways/Pathway.php(1153): Pathway->updateCache('svg')
  4. 3 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(129): Pathway->getImage()
  5. 4 /var/www/wikipathways/wpi/extensions/pathwayThumb.php(53): makeThumbLinkObj(Object(Pathway), 'ACE2 inhibition...', 'https://classic...', 'ACE2 inhibition...', 'center', 'pwthumb', '300')
  6. 5 [internal function]: renderPathwayImage(Object(Parser), 'Pathway:WP5035', '300', 'center', 'ACE2 inhibition...', 'pathway', 'ACE2 inhibition...')
  7. 6 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('renderPathwayIm...', Array)
  8. 7 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPTemplateFrame_DOM))
  9. 8 /var/www/wikipathways/includes/parser/Parser.php(2986): PPFrame_DOM->expand(Object(PPNode_DOM))
  10. 9 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  11. 10 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  12. 11 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{{Template:Toda...')
  13. 12 /var/www/wikipathways/includes/parser/Parser.php(439): Parser->internalParse('{{Template:Toda...')
  14. 13 /var/www/wikipathways/wpi/extensions/PathwayOfTheDay/PathwayOfTheDay.php(60): Parser->recursiveTagParse('{{Template:Toda...')
  15. 14 [internal function]: getPathwayOfTheDay(Object(Parser), 'Monday 6 May 20...', 'Curation:COVID1...', 'true')
  16. 15 /var/www/wikipathways/includes/parser/Parser.php(2860): call_user_func_array('getPathwayOfThe...', Array)
  17. 16 /var/www/wikipathways/includes/parser/Preprocessor_DOM.php(915): Parser->braceSubstitution(Array, Object(PPFrame_DOM))
  18. 17 /var/www/wikipathways/includes/parser/Parser.php(2678): PPFrame_DOM->expand(Object(PPNode_DOM), 0)
  19. 18 /var/www/wikipathways/includes/parser/Parser.php(966): Parser->replaceVariables('{| class="wikit...')
  20. 19 /var/www/wikipathways/includes/parser/Parser.php(321): Parser->internalParse('{| class="wikit...')
  21. 20 /var/www/wikipathways/includes/OutputPage.php(405): Parser->parse('{| class="wikit...', Object(Title), Object(ParserOptions), true, true, 111710)
  22. 21 /var/www/wikipathways/includes/OutputPage.php(391): OutputPage->addWikiTextTitle('{| class="wikit...', Object(Title), true, true)
  23. 22 /var/www/wikipathways/includes/OutputPage.php(500): OutputPage->addWikiTextTitleTidy('{| class="wikit...', Object(Title), true)
  24. 23 /var/www/wikipathways/includes/DifferenceEngine.php(313): OutputPage->addWikiTextTidy('{| class="wikit...')
  25. 24 /var/www/wikipathways/includes/DifferenceEngine.php(271): DifferenceEngine->renderNewRevision()
  26. 25 /var/www/wikipathways/includes/Article.php(729): DifferenceEngine->showDiffPage(false)
  27. 26 /var/www/wikipathways/includes/Wiki.php(437): Article->view()
  28. 27 /var/www/wikipathways/includes/Wiki.php(59): MediaWiki->performAction(Object(OutputPage), Object(Article), Object(Title), Object(User), Object(WebRequest))
  29. 28 /var/www/wikipathways/index.php(93): MediaWiki->initialize(Object(Title), Object(Article), Object(OutputPage), Object(User), Object(WebRequest))
  30. 29 {main}
Retrieved from "https://classic.wikipathways.org/index.php/Help:WikiPathways_Portals"
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